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For: Yin QF, Chen LL, Yang L. Fractionation of non-polyadenylated and ribosomal-free RNAs from mammalian cells. Methods Mol Biol 2015;1206:69-80. [PMID: 25240887 DOI: 10.1007/978-1-4939-1369-5_6] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Number Cited by Other Article(s)
1
Ma XK, Zhai SN, Yang L. Approaches and challenges in genome-wide circular RNA identification and quantification. Trends Genet 2023;39:897-907. [PMID: 37839990 DOI: 10.1016/j.tig.2023.09.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 09/13/2023] [Accepted: 09/15/2023] [Indexed: 10/17/2023]
2
Liu J, Zhang C, Jiang M, Ni Y, Xu Y, Wu W, Huang L, Newmaster SG, Kole C, Wu B, Liu C. Identification of circular RNAs of Cannabis sativa L. potentially involved in the biosynthesis of cannabinoids. PLANTA 2023;257:72. [PMID: 36862222 DOI: 10.1007/s00425-023-04104-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 02/21/2023] [Indexed: 06/18/2023]
3
Ma XK, Xue W, Chen LL, Yang L. CIRCexplorer pipelines for circRNA annotation and quantification from non-polyadenylated RNA-seq datasets. Methods 2021;196:3-10. [PMID: 33588028 DOI: 10.1016/j.ymeth.2021.02.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 02/02/2021] [Accepted: 02/05/2021] [Indexed: 01/01/2023]  Open
4
Xue W, Ma XK, Yang L. Fast and furious: insights of back splicing regulation during nascent RNA synthesis. SCIENCE CHINA-LIFE SCIENCES 2021;64:1050-1061. [PMID: 33580425 DOI: 10.1007/s11427-020-1881-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2020] [Accepted: 01/07/2021] [Indexed: 12/15/2022]
5
Guo SK, Nan F, Liu CX, Yang L, Chen LL. Mapping circular RNA structures in living cells by SHAPE-MaP. Methods 2021;196:47-55. [PMID: 33571668 DOI: 10.1016/j.ymeth.2021.01.011] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2020] [Revised: 01/21/2021] [Accepted: 01/29/2021] [Indexed: 01/22/2023]  Open
6
Characterization of Circular RNAs. Methods Mol Biol 2021;2372:179-192. [PMID: 34417752 DOI: 10.1007/978-1-0716-1697-0_16] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
7
Guo CJ, Ma XK, Xing YH, Zheng CC, Xu YF, Shan L, Zhang J, Wang S, Wang Y, Carmichael GG, Yang L, Chen LL. Distinct Processing of lncRNAs Contributes to Non-conserved Functions in Stem Cells. Cell 2020;181:621-636.e22. [PMID: 32259487 DOI: 10.1016/j.cell.2020.03.006] [Citation(s) in RCA: 189] [Impact Index Per Article: 37.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Revised: 01/05/2020] [Accepted: 03/05/2020] [Indexed: 01/07/2023]
8
Li C, Jiang H. Altered expression of circular RNA in human dental pulp cells during odontogenic differentiation. Mol Med Rep 2019;20:871-878. [PMID: 31173232 PMCID: PMC6625184 DOI: 10.3892/mmr.2019.10359] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2018] [Accepted: 06/29/2018] [Indexed: 12/11/2022]  Open
9
Structure and Degradation of Circular RNAs Regulate PKR Activation in Innate Immunity. Cell 2019;177:865-880.e21. [DOI: 10.1016/j.cell.2019.03.046] [Citation(s) in RCA: 365] [Impact Index Per Article: 60.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Revised: 01/29/2019] [Accepted: 03/25/2019] [Indexed: 11/19/2022]
10
Corti A, Sota R, Dugo M, Calogero RA, Terragni B, Mantegazza M, Franceschetti S, Restelli M, Gasparini P, Lecis D, Chrzanowska KH, Delia D. DNA damage and transcriptional regulation in iPSC-derived neurons from Ataxia Telangiectasia patients. Sci Rep 2019;9:651. [PMID: 30679601 PMCID: PMC6346060 DOI: 10.1038/s41598-018-36912-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Accepted: 11/23/2018] [Indexed: 11/22/2022]  Open
11
Yang Q, Wang Y, Yang L. Multifaceted roles of complementary sequences on circRNA formation. QUANTITATIVE BIOLOGY 2017. [DOI: 10.1007/s40484-017-0112-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
12
Li X, Liu CX, Xue W, Zhang Y, Jiang S, Yin QF, Wei J, Yao RW, Yang L, Chen LL. Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection. Mol Cell 2017. [PMID: 28625552 DOI: 10.1016/j.molcel.2017.05.023] [Citation(s) in RCA: 476] [Impact Index Per Article: 59.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
13
Zhang XO, Dong R, Zhang Y, Zhang JL, Luo Z, Zhang J, Chen LL, Yang L. Diverse alternative back-splicing and alternative splicing landscape of circular RNAs. Genome Res 2016;26:1277-87. [PMID: 27365365 PMCID: PMC5052039 DOI: 10.1101/gr.202895.115] [Citation(s) in RCA: 732] [Impact Index Per Article: 81.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2015] [Accepted: 06/28/2016] [Indexed: 01/16/2023]
14
Zhang Y, Xue W, Li X, Zhang J, Chen S, Zhang JL, Yang L, Chen LL. The Biogenesis of Nascent Circular RNAs. Cell Rep 2016;15:611-624. [DOI: 10.1016/j.celrep.2016.03.058] [Citation(s) in RCA: 298] [Impact Index Per Article: 33.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2015] [Revised: 02/18/2016] [Accepted: 03/14/2016] [Indexed: 12/18/2022]  Open
15
Zhang Y, Yang L, Chen LL. Characterization of Circular RNAs. Methods Mol Biol 2016;1402:215-227. [PMID: 26721494 DOI: 10.1007/978-1-4939-3378-5_17] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
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