Lipid Extraction Techniques for Stable Isotope Analysis and Ecological Assays

Arithmetic normalisation models for the effects of lipid on carbon stable isotope values in silver carp (Hypophthalmichthys molitrix) tissue

Invasive silver carp (Hypophthalmichthys molitrix) threaten Mississippi River basin ecosystems due to their ability to outcompete native species. Stable carbon (δ13C) and nitrogen (δ15N) isotope analysis has been used to study how silver carp impact native ecosystems, but lipids in fish tissues commonly bias their δ13C values. Chemical lipid extraction and mathematical equations that normalise δ13C values for lipid content can account for this bias, but have not been assessed for silver carp. We examined δ13C, δ15N, and C:N ratios before and after chemical lipid extraction using 2:1 chloroform:methanol in silver carp muscle and whole fish collected along the Mississippi River. We used linear and natural log models to estimate lipid-extracted δ13C values in silver carp muscle and whole fish samples based on their non-lipid-extracted δ13C values and elemental C:N ratios. Arithmetic models were evaluated for best fit, parsimony, and accuracy between mathematically normalised and chemically lipid-extracted δ13C values. Chemical lipid extraction increased silver carp δ13C values and decreased C:N ratio in muscle and whole fish, and increased δ15N values in whole fish but not fish muscle. While both linear and natural log models accurately estimated lipid extracted δ13C values, natural log models provided better fit and parsimony throughout a wide range of C:N ratios. These results confirmed the need to account for lipid effects on δ13C values in silver carp. Moreover, our study will allow researchers to conduct isotopic analysis without the added time and cost of chemical lipid extraction and facilitate the comparison of silver carp muscle and whole fish isotopic values across studies.

Minimally Invasive Vacuum-Aided Extraction Technique for the Lipid Analysis of Historic Parchment

Parchment is an ancient writing support formed from dehaired animal skins. Its manufacture comprises a series of liming and scraping steps before being stretched and dried under tension. Historical parchment represents a valuable source of cultural heritage which, until now, has limited investigations to noninvasive analyses to infer ink composition, degradation, or physical changes over time. We highlight the prospect of the molecular and isotope compositions of animal lipids from parchment as an untapped record of its production and the animal's diet and environment. We report a minimally invasive, total lipid extraction aided by a vacuum for historical parchments. The quantitative and qualitative compositions of lipid extracts obtained using this method are compared with those obtained using invasive sampling for nine sacrificial membranes dated 1765-1825 CE. This extraction method is then applied to membranes from the Chancery Parliament Rolls (1814-1820 CE) held by The National Archives, UK to obtain lipids and derive taxonomic and dietary information using their stable carbon isotope compositions. This novel vacuum-aided extraction allows, for the first time, animal lipids to be obtained from parchment minimally invasively, paving the way for dietary and paleoclimate studies using this well-dated and common material.

Summer/fall diet and macronutrient assimilation in an Arctic predator

Free-ranging predator diet estimation is commonly achieved by applying molecular-based tracers because direct observation is not logistically feasible or robust. However, tracers typically do not represent all dietary macronutrients, which likely obscures resource use as prey proximate composition varies and tissue consumption can be specific. For example, polar bears (Ursus maritimus) preferentially consume blubber, yet diets have been estimated using fatty acids based on prey blubber or stable isotopes of lipid-extracted prey muscle, neither of which represent both protein and lipid macronutrient contributions. Further, additional bias can be introduced because dietary fat is known to be flexibly routed beyond short-term energy production and storage. We address this problem by simultaneously accounting for protein and lipid assimilation using carbon and nitrogen isotope compositions of lipid-containing prey muscle and blubber to infer summer/fall diet composition and macronutrient proportions from Chukchi Sea polar bear guard hair (n = 229) sampled each spring between 2008 and 2017. Inclusion of blubber (85-95% lipid by dry mass) expanded the isotope mixing space and improved separation among prey species. Ice-associated seals, including nutritionally dependent pups, were the primary prey in summer/fall diets with lower contributions by Pacific walruses (Odobenus rosmarus) and whales. Percent blubber estimates confirmed preferential selection of this tissue and represented the highest documented lipid assimilation for any animal species. Our results offer an improved understanding of summer/fall prey macronutrient usage by Chukchi Sea polar bears which likely coincides with a nutritional bottleneck as the sea ice minimum is approached.

Individual and population dietary specialization decline in fin whales during a period of ecosystem shift

This study sought to estimate the effect of an anthropogenic and climate-driven change in prey availability on the degree of individual and population specialization of a large marine predator, the fin whale (Balaenoptera physalus). We examined skin biopsies from 99 fin whales sampled in the St. Lawrence Estuary (Canada) over a nine year period (1998–2006) during which environmental change was documented. We analyzed stable isotope ratios in skin and fatty acid signatures in blubber samples of whales, as well as in seven potential prey species, and diet was quantitatively assessed using Bayesian isotopic models. An abrupt change in fin whale dietary niche coincided with a decrease in biomass of their predominant prey, Arctic krill (Thysanoessa spp.). This dietary niche widening toward generalist diets occurred in nearly 60% of sampled individuals. The fin whale population, typically composed of specialists of either krill or lipid-rich pelagic fishes, shifted toward one composed either of krill specialists or true generalists feeding on various zooplankton and fish prey. This change likely reduced intraspecific competition. In the context of the current “Atlantification” of northern water masses, our findings emphasize the importance of considering individual-specific foraging tactics and not only population or group average responses when assessing population resilience or when implementing conservation measures.

Autochthonous production contributes to the diet of wood-boring invertebrates in temperate shallow water

Marine wood-boring invertebrates rapidly fragment coarse woody debris in the sea. These wood borers have the ability to digest wood cellulose, but other potential food sources have been less investigated. To assess the contribution of each potential food source to the diet of wood borers, we traced seasonal and environmental changes in δ¹³C of shipworms cultured under the same experimental conditions and related these changes to variations in δ¹³C of potential food sources, i.e., wood log and particulate organic matter (POM) by using multiple linear regression models rather than the Bayesian mixing model. Based on the standardized partial regression coefficients in the model, it became clear that wood-derived organic carbon was the main carbon source for the teredinids, and POM also accounted for 37.9% of the teredinids' carbon source. Furthermore, we clarified variations in supplemental nitrogen sources for the teredinids: one species depended on both POM and wood log, whereas the other three species depended on either POM or wood log for their nitrogen source. δ¹³C values of another wood-boring bivalve of Martesia (Pholadidae) increase as it grows, which suggests that the bivalve switches its feeding strategy from xylophagous to filter feeding as it grows. Wood borers are known to accelerate the transfer of organic materials derived from wood logs to marine ecosystems. However, this study suggests that autochthonous production strongly contribute to the diet of marine wood borers, helping them to decompose wood logs in temperate shallow water.

Impact of habitation conditions on metabolism in the muscles, liver, and gonads of different sex and age groups of bream

Impact of the factors of the aquatic environment is an inevitable aspect of the life of fish as poikilothermic animals and provokes responses in their organisms. The study focused on determining peculiarities in the composition of the metabolic products in the tissues of different age and sex groups of common bream Abramis brama (L.) depending on the living conditions in the water reservoirs of the Upper Volga. The fish were captured in the fattening period in summer and autumn, measured, weighed, identifying sex, maturity stage of the gonads and age. In the muscles, liver and gonads of bream, we analyzed the contents of water, dry matter, lipids, protein, ash and carbohydrates using the standard techniques. The contents of biochemical components in the organism of bream were to a higher degree determined by the peculiarities of the living conditions rather than sex and age of the individuals. In the muscles and liver of bream living in the conditions of increased water temperature and low concentration of oxygen, the concentrations of protein and ash were lower. In the same tissues of bream from the water bodies with high concentrations of pollutants in the water and benthic deposits, we found increased fat content. The muscles of male bream contained less protein and more carbohydrates than females and juvenile individuals, and the muscles of juveniles had less fat. The environmental factors had greater influence on the content of the metabolic products in the liver of bream than sex, and only females had higher ash content than males. The testes had more fat and less protein than the ovaries. During the transition of the gonads from maturity stage II to III, the contents of dry matter and lipids in them decreased. We determined that the environmental factors have stronger impact on biochemical parameters in the tissues of bream than age, because we found no general age patterns in the dynamics of biochemical components, except the liver, in which the highest content of organic compounds was found in individuals aged 6 to 10 years. Water heated by the Hydro Power Plant positively influenced the young bream, as indicated by higher content of metabolic products in individuals aged 5+ than older groups and bream from the surveyed water bodies. Monitoring of the physiological condition of bream focusing on the contents of metabolic products in the tissues may provide necessary data for successful regulation of bream populations in the water reservoirs of the Upper Volga.

Stable isotope analysis reveals that humpback whales (Megaptera novaeangliae) primarily consume capelin (Mallotus villosus) in coastal Newfoundland, Canada

On the Newfoundland (Canada) foraging ground, humpback whales (Megaptera novaeangliae (Borowski, 1781)) are found associated with a dominant forage fish species, capelin (Mallotus villosus (Müller, 1776)), that experienced a population collapse in the early 1990s and has not recovered. Our primary goal was to reconstruct dietary proportions of humpback whales on their summer foraging grounds off the northeast coast of Newfoundland during July–August 2016 and 2017 using a Bayesian stable isotope mixing model (MixSiar). Modelled dietary proportions were similar in both years, with capelin comprising ∼90% of the diet. However, both δ13C and δ15N in humpback whale skin differed significantly between years, resulting in minimal isotopic niche overlap (9%). Lipid-extracted and nonlipid-extracted skin samples were used to develop a lipid normalization equation: Δ13C = –3.184 + 1.011(C:N). Overall, findings suggest that capelin is the primary prey type of humpback whales in coastal Newfoundland, despite the continued collapsed state of the capelin population. Findings also reiterate that dietary reconstruction from stable isotope analysis of cetacean skin can be misinterpreted without concurrently sampled isotopic ratios of potential prey types.

Trophic Ecology of Endangered Gold-Spotted Pond Frog in Ecological Wetland Park and Rice Paddy Habitats

Simple Summary

Gaining information about the habitat environment and biological interactions is important for conserving gold-spotted pond frogs, which are faced with a threat of local population extinction in Korea due to artificial habitat changes. Based on stable isotope ratios, we estimated the ecological niche space (ENS) of gold-spotted pond frogs in an ecological wetland park and a rice paddy differing in habitat patch connectivity and analyzed the possibility of their ENS overlapping that of competitive and predatory frogs. Gold-spotted pond frogs showed a broader ENS in the ecological wetland park, wherein predation was relatively easy, than in the rice paddy. However, the ENS of the gold-spotted pond frogs was highly probably overlapped with that of other competing frog species that shared some of the food sources. Nevertheless, since the stable isotope analysis showed that gold-spotted pond frogs fed on more diverse prey than their competitors, it would remain relatively easy to procure alternative food sources, which are less affected by the competition in an environment with abundant food. Therefore, for stable settling of gold-spotted pond frogs into habitats and preserving their population, establishing habitat environments with highly diverse food sources is crucial, following consideration of their feeding behavior.

Abstract

The gold-spotted pond frog (Pelophylax chosenicus) is an endangered amphibian species in South Korea. In order to obtain ecological information regarding the gold-spotted pond frog’s habitat environment and biological interactions, we applied stable isotope analysis to quantify the ecological niche space (ENS) of frogs including black-spotted pond frogs (P. nigromaculatus) and bullfrogs (Lithobates catesbeianus) within the food web of two different habitats—an ecological wetland park and a rice paddy. The gold-spotted pond frog population exhibited a broader ENS in the ecological wetland park than in the rice paddy. According to the carbon stable isotope ratios, gold-spotted pond frogs mainly fed on insects, regardless of habitat type. However, the results comparing the range of both carbon and nitrogen stable isotopes showed that gold-spotted pond frogs living in the rice paddy showed limited feeding behavior, while those living in the ecological wetland park fed on various food sources located in more varied trophic positions. Although the ENS of the gold-spotted pond frog was generally less likely to be overlapped by that of other frog species, it was predicted to overlap with a high probability of 87.3% in the ecological wetland park. Nevertheless, gold-spotted pond frogs in the ecological wetland park were not significantly affected by the prey competition with competitive species by feeding on other prey for which other species’ preference was low. Since these results show that a habitats’ food diversity has an effect on securing the ENS of gold-spotted pond frogs and prey competition, we recommend that the establishment of a food environment that considers the feeding behavior of gold-spotted pond frogs is important for the sustainable preservation of gold-spotted pond frogs and their settlement in alternative habitats.

Evaluation of two lipid removal methods for stable carbon and nitrogen isotope analysis in whale tissue

RATIONALE

The presence of lipids in animal tissues can influence the interpretation of stable isotope data, particularly in lipid-rich tissues such as the skin and muscle of marine mammals. The traditionally employed chloroform-methanol delipidation protocol has the potential to alter δ¹⁵ N values in proteinaceous tissues. Our objective was to determine whether the use of cyclohexane could be an alternative extraction method, effectively removing lipids without altering δ¹⁵ N values.

METHODS

Kidney, liver, muscle, and skin samples were collected from beach-cast Sowerby's beaked whales (Mesoplodon bidens). Control subsamples were processed without delipidation extraction, and duplicate subsamples were extracted with either chloroform-methanol or cyclohexane. δ¹³ C, δ¹⁵ N, and C:N values were determined by continuous-flow elemental analysis isotope ratio mass spectrometry. Paired Wilcoxon tests were used to evaluate the change in isotope ratios after extraction, and unpaired Wilcoxon tests were used to evaluate differences in isotope ratios between extractions.

RESULTS

Use of cyclohexane is an effective delipidation technique for tissues with low and moderate lipid content. Chemical delipidation influenced δ¹⁵ N values; extracted samples generally showed an increase in δ¹⁵ N values which varied from 0.0‰ to 1.7‰. Chloroform-methanol extraction resulted in alterations to δ¹⁵ N values greater than the analytical precision for all analyzed tissues. Changes to δ¹⁵ N values after cyclohexane extraction were at or near the analytical precision for liver and muscle but greater than the analytical precision for kidney and skin.

CONCLUSIONS

We recommend processing duplicate subsamples for stable isotope analysis, one with and one without extraction, in order to obtain accurate values for each isotope ratio. Prolonged chemical extractions are not necessary to effectively remove lipids. When samples are limited, we suggest using cyclohexane for tissues with low or moderate lipid content, and chloroform-methanol for lipid-rich tissues.

Evaluation of the quantity and the carbon isotopic composition of amino acids by using diverse sample residues after lipid extraction

Compound-specific stable isotope analysis (CSIA) becomes a critical tool in the fields of ecology and biogeochemistry to trace basal carbon sources such as amino acids (AAs) and fatty acids (FAs) in natural environments. However, in many studies, either AAs or FAs have been analyzed due to restricted sample amounts. The aim of this study is to report a single-sample preparation method by identifying AAs using lipid-free residues derived from a typical FA analytic procedure. The capability of the lipid-free residues was evaluated by determining AA quantities and carbon isotopic compositions (δ¹³C) across diverse sample matrices, including soil, suspended particulate organic matter (SPM), fish tissue, and cultured cyanobacteria (N = 3). Our result showed that the use of lipid-free residues after a typical lipid extraction procedure in most samples did not significantly reduce the AA quantities, relative to the conventional AA method (done by using whole samples), except in case of samples of soil. Moreover, δ¹³C compositions of the most AAs (from essential to nonessential AAs) in all samples were not significantly different, with an average isotope difference of < 2.1‰ between the two methods. Overall results indicate that the residual parts after extracting lipid fraction are useful for reliable AA quantification and individual isotopic information. Ultimately, one sample preparation for determining FA and AA data enables us to characterize one (or multiple) basal carbon source(s) within rare samples despite their limited abundance. Graphical abstract.

Isotopic niche differs between seal and fish-eating killer whales (Orcinus orca) in northern Norway

Ecological diversity has been reported for killer whales (Orcinus orca) throughout the North Atlantic but patterns of prey specialization have remained poorly understood. We quantify interindividual dietary variations in killer whales (n = 38) sampled throughout the year in 2017-2018 in northern Norway using stable isotopic nitrogen (δ15N: 15N/14N) and carbon (δ13C: 13C/12C) ratios. A Gaussian mixture model assigned sampled individuals to three differentiated clusters, characterized by disparate nonoverlapping isotopic niches, that were consistent with predatory field observations: seal-eaters, herring-eaters, and lumpfish-eaters. Seal-eaters showed higher δ15N values (mean ± SD: 12.6 ± 0.3‰, range = 12.3-13.2‰, n = 10) compared to herring-eaters (mean ± SD: 11.7 ± 0.2‰, range = 11.4-11.9‰, n = 19) and lumpfish-eaters (mean ± SD: 11.6 ± 0.2‰, range = 11.3-11.9, n = 9). Elevated δ15N values for seal-eaters, regardless of sampling season, confirmed feeding at high trophic levels throughout the year. However, a wide isotopic niche and low measured δ15N values in the seal-eaters, compared to that of whales that would eat solely seals (δN-measured = 12.6 vs. δN-expected = 15.5), indicated a diverse diet that includes both fish and mammal prey. A narrow niche for killer whales sampled at herring and lumpfish seasonal grounds supported seasonal prey specialization reflective of local peaks in prey abundance for the two fish-eating groups. Our results, thus, show differences in prey specialization within this killer whale population in Norway and that the episodic observations of killer whales feeding on prey other than fish are a consistent behavior, as reflected in different isotopic niches between seal and fish-eating individuals.

Diet-tissue discrimination factors (δ15 N and δ13 C values) for blood components in Magellanic (Spheniscus magellanicus) and southern rockhopper (Eudyptes chrysocome) penguins

RATIONALE

Analysis of the stable isotope ratios of carbon and nitrogen (δ¹³ C and δ¹⁵ N values) is increasingly being used to gain insight into predator trophic ecology, which requires accurate diet-tissue discrimination factors (DTDFs), or the isotopic difference between prey and predator. Accurate DTDFs must be calculated from predators consuming an isotopically constant diet over time in controlled feeding experiments, but these studies have received little attention to date, especially among seabird species.

METHODS

In this study, aquarium-housed Magellanic (Spheniscus magellanicus) and southern rockhopper (Eudyptes chrysocome) penguins were fed a single-prey source diet (capelin Mallotus villosus) for eight weeks. Stable isotope ratios (δ¹³ C and δ¹⁵ N values) of penguin blood (cellular component and plasma) and capelin were measured using mass spectrometry and then used to calculate DTDFs for both components of penguin blood by comparison with prey values.

RESULTS

The DTDFs for plasma were -0.63 ± 0.49 (mean ± SD) and -0.27 ± 0.22 for δ¹³ C values, and 2.60 ± 0.50 and 2.78 ± 0.22 for δ¹⁵ N values for Magellanic and southern rockhopper penguins, respectively, while the DTDFs for the cellular component were 1.22 ± 0.03 and 1.26 ± 0.03 for δ¹³ C values, and 2.54 ± 0.07 and 2.43 ± 0.17 for δ¹⁵ N values.

CONCLUSIONS

We compare our DTDFs with published values from blood components of penguins and discuss the effects that lipid extraction, sample storage, and diet have on the DTDFs of penguin blood components. This study provides accurate DTDFs of blood components for two seabird species of conservation concern, and is one of the first to provide plasma DTDFs for penguins, which are underrepresented in the seabird literature.

Isotopic turnover rates and diet-tissue discrimination depend on feeding habits of freshwater snails

Estimates of animal diets and trophic structure using stable isotope analysis are strongly affected by diet-tissue discrimination and tissue turnover rates, yet these factors are often unknown for consumers because they must be measured using controlled-feeding studies. Furthermore, these parameters may be influenced by diet quality, growth, and other factors. We measured the effect of dietary protein content on diet-tissue discrimination and tissue turnover in three freshwater snail species. We fed lettuce to individually housed snails (n = 450 per species) for ten weeks, then half were switched to a high-protein diet. Isotopic values of muscle and gonad tissue were assessed at 48 and 80 days post-diet change. Snail discrimination factors varied by diet (low-protein > high-protein) and usually differed among species for both N and C, although species had similar carbon discrimination when fed the low-protein diet. Carbon turnover rates were similar among species for a given tissue type, but nitrogen turnover varied more among species. In addition, diet affected growth of species differently; some species grew larger on high-protein (H. trivolvis) while others grew larger on low-protein diet (Lymnaea spp.). These differences among species in growth influenced turnover rates, which were faster in the species with the highest growth rate following the diet switch from low to high-protein. Thus, growth is one of the main processes that affects tissue turnover, but growth and feeding preference did not affect diet-tissue discrimination, which was greater on low-protein than high-protein diets for all species regardless of growth performance. These results suggest that diet might influence two key parameters of stable isotope analysis differently.