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Lanzrath H, von Lieres E, Metzner R, Huber G. Analyzing time activity curves from spatio-temporal tracer data to determine tracer transport velocity in plants. Math Biosci 2025; 383:109430. [PMID: 40118142 DOI: 10.1016/j.mbs.2025.109430] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2024] [Revised: 12/10/2024] [Accepted: 03/11/2025] [Indexed: 03/23/2025]
Abstract
Non-invasive methods utilizing tracers have a great potential to investigate carbon allocation in plants. Specifically, radioactive tracers, such as 11C, enable the monitoring of spatially localized transport processes on short time scales in living plants. Typically, such tracer transport experiments yield time activity curves (TACs) of tracer activity over time at various locations along a transport pathway. These TACs can exhibit different characteristic shapes that strongly depend on tracer transport dynamics, reflecting properties such as transport velocity, exchange with surrounding tissue, and tracer storage along the pathway. Various methods, either data-driven or model-based, exist to determine transport velocities from TACs. However, for some TAC shapes, the inferred carbon tracer velocity values can be inconsistent and greatly vary between analysis methods. In the present study, we review and evaluate different analysis methods for their suitability to reliably determine tracer transport velocities from typical TAC shapes. For this evaluation, we use both in silico generated and experimentally acquired TACs from positron emission tomography measurements on tomato, barley, and bean. We demonstrate that each of the compared methods can be suitable for specific TAC shapes while being less or not appropriate for others. In conclusion, we present a case-specific evaluation of methods as a reference for analyzing TACs from tracer transport experiments, which allows to ensure a robust and globally comparable determination of transport velocities.
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Affiliation(s)
- Hannah Lanzrath
- Forschungszentrum Jülich, IBG-2: Plant Sciences, 52428 Jülich, Germany; RWTH Aachen University, Computational Systems Biotechnology, 52074 Aachen, Germany; Forschungszentrum Jülich, Center for Advanced Simulation and Analytics (CASA), 52428 Jülich, Germany
| | - Eric von Lieres
- Forschungszentrum Jülich, IBG-1: Biotechnology, 52428 Jülich, Germany; RWTH Aachen University, Computational Systems Biotechnology, 52074 Aachen, Germany; Forschungszentrum Jülich, Center for Advanced Simulation and Analytics (CASA), 52428 Jülich, Germany
| | - Ralf Metzner
- Forschungszentrum Jülich, IBG-2: Plant Sciences, 52428 Jülich, Germany; Forschungszentrum Jülich, Center for Advanced Simulation and Analytics (CASA), 52428 Jülich, Germany
| | - Gregor Huber
- Forschungszentrum Jülich, IBG-2: Plant Sciences, 52428 Jülich, Germany; Forschungszentrum Jülich, Center for Advanced Simulation and Analytics (CASA), 52428 Jülich, Germany.
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Li SY, Hussain SB, Vincent C. Response of carbon fixation, allocation, and growth to source-sink manipulation by defoliation in vegetative citrus trees. PHYSIOLOGIA PLANTARUM 2024; 176:e14304. [PMID: 38686664 DOI: 10.1111/ppl.14304] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 03/07/2024] [Accepted: 03/14/2024] [Indexed: 05/02/2024]
Abstract
Source-sink balance in plants determines carbon distribution, and altering it can impact carbon fixation, transport, and allocation. We aimed to investigate the effect of altered source-sink ratios on carbon fixation, transport, and distribution in 'Valencia' sweet orange (Citrus x sinensis) by various defoliation treatments (0%, 33%, 66%, and 83% leaf removal). Gas exchange parameters were measured on 0 and 10 days after defoliation using A/Ci response curves, and leaf export was measured two days after defoliation using radioisotope tracer techniques. Greater defoliation increased the maximum rate of carboxylation (Vcmax), electron transport rate (J1200), and triose-phosphate utilization rate (TPU). Leaf export was unaffected by defoliation but increased in leaves closer to the shoot apex. Basipetal translocation velocity in the trunk remained unaltered, indicating that more photosynthates remained in the shoot rather than being transported directly to the root sink. Defoliated plants initiated more new flush shoots but accumulated less shoot biomass per plant after 8 weeks. Carbon allocation to fine roots was smaller in defoliated plants, suggesting defoliation led to retention of carbohydrates in aboveground organs such as the trunk and other shoots from previous growing cycles. In conclusion, the low source-sink ratio increased carbon fixation without impacting individual leaf export in citrus. The results suggest that intermediate sinks such as the aboveground perennial organs play a role in mediating the translocation velocity. Further research is necessary to better understand the dynamics of source-sink regulation in citrus trees.
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Affiliation(s)
- Sheng-Yang Li
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL, USA
| | - Syed Bilal Hussain
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL, USA
- School of Agriculture and Food Science, University College Dublin, Dublin 4, Ireland
| | - Christopher Vincent
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL, USA
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Robledo J, Welker S, Shtein I, Bernardini C, Vincent C, Levy A. Phloem and Xylem Responses Are Both Implicated in Huanglongbing Tolerance of Sugar Belle. PHYTOPATHOLOGY 2024; 114:441-453. [PMID: 37551959 DOI: 10.1094/phyto-05-23-0148-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/09/2023]
Abstract
Although huanglongbing (HLB) is a devastating citrus disease, improved tolerant cultivars, such as Sugar Belle (SB) mandarin, have been identified. To understand the responses that HLB-affected SB undergoes, we compared 14CO2 fixation, carbohydrate export, phloem callose accumulation, relative expression of plant defense activators, and anatomical changes between healthy and infected SB trees versus susceptible Pineapple (PA) sweet orange. Eight- to ten-week-old leaves of infected SB showed a 2.5-fold increase in 14CO2 fixation and a 13% decrease in 14C-carbohydrate export, whereas HLB-affected PA presented a decrease of 33 and 50%, respectively. The mean distance of a callose deposit to its closest neighbor was 36% smaller in infected SB versus healthy, whereas in HLB-affected PA, it was 33% higher. Expression of papain-like cysteine proteases (PLCPs) was upregulated in SB but downregulated in PA. Infected SB showed minor alterations in the number of xylem vessels, a 16% larger xylem vessel lumen area, and a 14% increase in the proportional area of the xylem. In contrast, PA showed a 2.4-fold increase in the xylem vessel number and a 2% increase in the proportional xylem area. Three complementary mechanisms of tolerance in SB are hypothesized: (i) increased carbohydrate availability induced by greater CO2 fixation, mild effect in carbohydrate export, and local accumulation of callose in the phloem; (ii) activation of defense response via upregulation of PLCPs, and (iii) increased investment in the xylem structure. Thus, phloem and xylem modifications seem to be involved in SB tolerance.
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Affiliation(s)
- Jacobo Robledo
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, U.S.A
- Department of Plant Pathology, University of Florida, Gainesville, FL 32611, U.S.A
| | - Stacy Welker
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, U.S.A
| | - Ilana Shtein
- Eastern Region Research and Development Center, Ariel, Israel
| | - Chiara Bernardini
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, U.S.A
| | - Christopher Vincent
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, U.S.A
- Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, U.S.A
| | - Amit Levy
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, U.S.A
- Department of Plant Pathology, University of Florida, Gainesville, FL 32611, U.S.A
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Welker S, Pierre M, Santiago JP, Dutt M, Vincent C, Levy A. Phloem transport limitation in Huanglongbing-affected sweet orange is dependent on phloem-limited bacteria and callose. TREE PHYSIOLOGY 2022; 42:379-390. [PMID: 34617106 DOI: 10.1093/treephys/tpab134] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Accepted: 10/01/2021] [Indexed: 05/11/2023]
Abstract
Huanglongbing (HLB), caused by Candidatus `Liberibacter asiaticus' (CLas), is a phloem-limited disease that disrupts citrus production in affected areas. In HLB-affected plants, phloem sieve plate pores accumulate callose, and leaf carbohydrate export is reduced. However, whether HLB causes a reduction in carbohydrate phloem translocation speed and the quantitative relationships among callose, CLas population and phloem translocation are still unknown. In this work, a procedure was developed to concurrently measure sugar transport, callose deposition and relative pathogen population at different locations throughout the stem. Increasing quantities of CLas genetic material were positively correlated with quantity and density of callose deposits and negatively correlated with phloem translocation speed. Callose deposit quantity was position and rootstock dependent and was negatively correlated with phloem translocation speed, suggesting a localized relationship. Remarkably, callose accumulation and phloem translocation disruption in the scion were dependent on rootstock genotype. Regression results suggested that the interaction of Ct values and number of phloem callose depositions, but not their size or density, explained the effects on translocation speed. Sucrose, starch and sink 14C label allocation data support the interpretation of a transport pathway limitation by CLas infection. This work shows that the interaction of local accumulation of callose and CLas affects phloem transport. Furthermore, the extent of this accumulation is attenuated by the rootstock and provides important information about the disease mechanism of phloem-inhabiting bacteria. Together, these results constitute the first example of a demonstrated transport limitation of phloem function by a microbial infection.
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Affiliation(s)
- Stacy Welker
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, USA
- Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA
| | - Myrtho Pierre
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, USA
| | - James P Santiago
- Plant Resilience Institute and MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA
| | - Manjul Dutt
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, USA
- Department of Horticulture, University of Florida, Gainesville, FL 32611, USA
| | - Christopher Vincent
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, USA
- Department of Horticulture, University of Florida, Gainesville, FL 32611, USA
| | - Amit Levy
- Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, USA
- Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA
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Li SY, Vincent C. Root:shoot balance controls flush phenology and carbohydrate translocation dynamics in citrus (Citrus x sinensis) trunk. PHYSIOLOGIA PLANTARUM 2022; 174:e13601. [PMID: 34796913 DOI: 10.1111/ppl.13601] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 11/01/2021] [Accepted: 11/17/2021] [Indexed: 06/13/2023]
Abstract
Flush shoot growth presents a fluctuation pattern alternating with root growth. The cyclic pattern determines the balance of root:shoot and can affect the direction and speed of carbohydrate translocation during the vegetative growth period. In this study, we used water deficit to limit corresponding growth in sweet orange (Citrus x sinensis) "OLL 4" grafted on "US-942" rootstock, and then observed the changes of translocation dynamics between two flush statuses. Our first hypothesis was that water deficit would reduce root growth and extend the root growth phase during the growth cycle, delaying the following flush. We then tested the related second hypothesis that shoot flushes would switch the direction and slow the speed of carbohydrate transport due to fluctuation between single and dual sinks. After recovery from a severe deficit, the flush was synchronized and emerged within 2 weeks. Mild and moderate water-deficit plants showed a delayed new flush. Next, we used a 14 C-labeling method to test whether translocation was affected by the presence of new flush. Basipetal translocation was dominant, but the new flush increased the likelihood of acropetal translocation. Translocation speeds were not different in both directions regardless of flushing status, though speed estimates were highly variable, even though 14 C export from the source leaf increased when new flush was present. The results suggest that flush timing across an environmental gradient is governed by source-sink dynamics. The presence of new flush altered the direction of photoassimilate translocation and rate of leaf export, but stem transport speeds were not distinguishably different.
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Affiliation(s)
- Sheng-Yang Li
- Horticultural Sciences Department, Citrus Research and Education Center, University of Florida, Lake Alfred, Florida, USA
| | - Christopher Vincent
- Horticultural Sciences Department, Citrus Research and Education Center, University of Florida, Lake Alfred, Florida, USA
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Liesche J, Vincent C, Han X, Zwieniecki M, Schulz A, Gao C, Bravard R, Marker S, Bohr T. The mechanism of sugar export from long conifer needles. THE NEW PHYTOLOGIST 2021; 230:1911-1924. [PMID: 33638181 DOI: 10.1111/nph.17302] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Accepted: 02/17/2021] [Indexed: 06/12/2023]
Abstract
The green leaves of plants are optimised for carbon fixation and the production of sugars, which are used as central units of carbon and energy throughout the plant. However, there are physical limits to this optimisation that remain insufficiently understood. Here, quantitative anatomical analysis combined with mathematical modelling and sugar transport rate measurements were used to determine how effectively sugars are exported from the needle-shaped leaves of conifers in relation to leaf length. Mathematical modelling indicated that phloem anatomy constrains sugar export in long needles. However, we identified two mechanisms by which this constraint is overcome, even in needles longer than 20 cm: (1) the grouping of transport conduits, and (2) a shift in the diurnal rhythm of sugar metabolism and export in needle tips. The efficiency of sugar transport in the phloem can have a significant influence on leaf function. The constraints on sugar export described here for conifer needles are likely to also be relevant in other groups of plants, such as grasses and angiosperm trees.
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Affiliation(s)
- Johannes Liesche
- College of Life Sciences & Biomass Energy Center for Arid and Semi-arid Lands, Northwest A&F University, Taicheng Road 3, Yangling, 712100, China
- Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich-Heine-Universität Düsseldorf, Universitätsstraße 1, Düsseldorf, 40225, Germany
| | - Christopher Vincent
- Department of Horticultural Sciences, University of Florida, 700 Experiment Station Road, Lake Alfred, FL, 33850, USA
| | - Xiaoyu Han
- College of Life Sciences & Biomass Energy Center for Arid and Semi-arid Lands, Northwest A&F University, Taicheng Road 3, Yangling, 712100, China
| | - Maciej Zwieniecki
- Department of Plant Sciences, University of California, Davis One Shields Avenue, Davis, CA, 95616, USA
| | - Alexander Schulz
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, Frederiksberg, 1871, Denmark
| | - Chen Gao
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, Frederiksberg, 1871, Denmark
| | - Rodrigue Bravard
- Department of Physics, Technical University of Denmark, Kgs. Lyngby, DK-2800, Denmark
| | - Sean Marker
- Department of Physics, Technical University of Denmark, Kgs. Lyngby, DK-2800, Denmark
| | - Tomas Bohr
- Department of Physics, Technical University of Denmark, Kgs. Lyngby, DK-2800, Denmark
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