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Paschke F, Lieske LA, Albrecht F, Chen CJ, Repp J, Gross L. Distance and Voltage Dependence of Orbital Density Imaging Using a CO-Functionalized Tip in Scanning Tunneling Microscopy. ACS NANO 2025; 19:2641-2650. [PMID: 39772482 PMCID: PMC11760183 DOI: 10.1021/acsnano.4c14476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Revised: 12/10/2024] [Accepted: 12/20/2024] [Indexed: 01/11/2025]
Abstract
The appearance of frontier molecular ion resonances measured with scanning tunneling microscopy (STM)─often referred to as orbital density images─of single molecules was investigated using a CO-functionalized tip in dependence on bias voltage and tip-sample distance. As model systems, we studied pentacene and naphthalocyanine on bilayer NaCl on Cu(111). Absolute tip-sample distances were determined by means of atomic force microscopy (AFM). STM imaging revealed a transition from predominant p- to s-wave tip contrast upon increasing the tip-sample distance, but the contrast showed only small changes as a function of voltage. The distance-dependent contrast change is explained with the steeper decay of the tunneling matrix element for tunneling between two p-wave centers, compared to tunneling between two s-wave centers. In simulations with a fixed ratio of s- to p-wave tip states, we can reproduce the experimental data including the distance-dependent transition from predominant p- to s-wave tunneling contribution.
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Affiliation(s)
- Fabian Paschke
- IBM Research
Europe − Zurich, 8803 Rüschlikon, Switzerland
| | | | | | - C. Julian Chen
- Department
of Applied Physics and Applied Mathematics, Columbia University, New York, New York 10027, United States
| | - Jascha Repp
- Institute
of Experimental and Applied Physics, University
of Regensburg, Regensburg 93053, Germany
| | - Leo Gross
- IBM Research
Europe − Zurich, 8803 Rüschlikon, Switzerland
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Abstract
The way chemists represent chemical structures as two-dimensional sketches made up of atoms and bonds, simplifying the complex three-dimensional molecules comprising nuclei and electrons of the quantum mechanical description, is the everyday language of chemistry. This language uses models, particularly of bonding, that are not contained in the quantum mechanical description of chemical systems, but has been used to derive machine-readable formats for storing and manipulating chemical structures in digital computers. This language is fuzzy and varies from chemist to chemist but has been astonishingly successful and perhaps contributes with its fuzziness to the success of chemistry. It is this creative imagination of chemical structures that has been fundamental to the cognition of chemistry and has allowed thought experiments to take place. Within the everyday language, the model nature of these concepts is not always clear to practicing chemists, so that controversial discussions about the merits of alternative models often arise. However, the extensive use of artificial intelligence (AI) and machine learning (ML) in chemistry, with the aim of being able to make reliable predictions, will require that these models be extended to cover all relevant properties and characteristics of chemical systems. This, in turn, imposes conditions such as completeness, compactness, computational efficiency and non-redundancy on the extensions to the almost universal Lewis and VSEPR bonding models. Thus, AI and ML are likely to be important in rationalizing, extending and standardizing chemical bonding models. This will not affect the everyday language of chemistry but may help to understand the unique basis of chemical language.
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Affiliation(s)
- Timothy Clark
- Computer-Chemistry-Center, Department of Chemistry and Pharmacy, Friedrich-Alexander-University Erlangen-Nürnberg, Nägelsbachstr. 25, 91052 Erlangen, Germany
| | - Martin G Hicks
- Beilstein-Institut, Trakehner Str. 7–9, 60487 Frankfurt am Main, Germany
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Haase D, Manz J, Tremblay JC. Attosecond Charge Migration Can Break Electron Symmetry While Conserving Nuclear Symmetry. J Phys Chem A 2020; 124:3329-3334. [DOI: 10.1021/acs.jpca.0c00404] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Dietrich Haase
- Institut für Chemie und Biochemie, Freie Universität Berlin, 14195 Berlin, Germany
| | - Jörn Manz
- Institut für Chemie und Biochemie, Freie Universität Berlin, 14195 Berlin, Germany
- State Key Laboratory of Quantum Optics and Quantum Optics Devices, Institute of Laser Spectroscopy, Shanxi University, Taiyuan 030006, China
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan 030006, China
| | - Jean Christophe Tremblay
- Laboratoire de Physique et Chimie Théoriques, CNRS-Université de Lorraine, UMR7019, 57070 Metz, France
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Obaid R, Schnorr K, Wolf TJA, Takanashi T, Kling NG, Kooser K, Nagaya K, Wada SI, Fang L, Augustin S, You D, Campbell EEB, Fukuzawa H, Schulz CP, Ueda K, Lablanquie P, Pfeifer T, Kukk E, Berrah N. Photo-ionization and fragmentation of Sc 3N@C 80 following excitation above the Sc K-edge. J Chem Phys 2019; 151:104308. [PMID: 31521092 DOI: 10.1063/1.5110297] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We have investigated the ionization and fragmentation of a metallo-endohedral fullerene, Sc3N@C80, using ultrashort (10 fs) x-ray pulses. Following selective ionization of a Sc (1s) electron (hν = 4.55 keV), an Auger cascade leads predominantly to either a vibrationally cold multiply charged parent molecule or multifragmentation of the carbon cage following a phase transition. In contrast to previous studies, no intermediate regime of C2 evaporation from the carbon cage is observed. A time-delayed, hard x-ray pulse (hν = 5.0 keV) was used to attempt to probe the electron transfer dynamics between the encapsulated Sc species and the carbon cage. A small but significant change in the intensity of Sc-containing fragment ions and coincidence counts for a delay of 100 fs compared to 0 fs, as well as an increase in the yield of small carbon fragment ions, may be indicative of incomplete charge transfer from the carbon cage on the sub-100 fs time scale.
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Affiliation(s)
- Razib Obaid
- Department of Physics, University of Connecticut, Storrs, Connecticut 06269, USA
| | | | - Thomas J A Wolf
- SLAC National Accelerator Laboratory, PULSE Institute, Menlo Park, California 94025, USA
| | - Tsukasa Takanashi
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan
| | - Nora G Kling
- Department of Physics, University of Connecticut, Storrs, Connecticut 06269, USA
| | - Kuno Kooser
- Deparment of Physics, University of Turku, Turku, Finland
| | - Kiyonobu Nagaya
- Department of Physics, Kyoto University, Kyoto 606-8502, Japan
| | - Shin-Ichi Wada
- Department of Physical Science, Hiroshima University, Higashihiroshima 739-8526, Japan
| | - Li Fang
- Department of Physics, The Ohio State University, Columbus, Ohio 43210, USA
| | - Sven Augustin
- Max-Planck-Institut für Kernphysik, Heidelberg, Germany
| | - Daehyun You
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan
| | - Eleanor E B Campbell
- EastCHEM and School of Chemistry, University of Edinburgh, Edinburgh, United Kingdom
| | - Hironobu Fukuzawa
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan
| | | | - Kiyoshi Ueda
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai 980-8577, Japan
| | - Pascal Lablanquie
- Laboratoire de Chimie Physique-Matière et Rayonnement, Sorbonne Université, CNRS, 4 place Jussieu, 75005 Paris, France
| | | | - Edwin Kukk
- Deparment of Physics, University of Turku, Turku, Finland
| | - Nora Berrah
- Department of Physics, University of Connecticut, Storrs, Connecticut 06269, USA
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The Role of Super-Atom Molecular Orbitals in Doped Fullerenes in a Femtosecond Intense Laser Field. Sci Rep 2017; 7:121. [PMID: 28273922 PMCID: PMC5427842 DOI: 10.1038/s41598-017-00124-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Accepted: 02/08/2017] [Indexed: 11/10/2022] Open
Abstract
The interaction of gas phase endohedral fullerene Ho3N@C80 with intense (0.1–5 × 1014 W/cm2), short (30 fs), 800 nm laser pulses was investigated. The power law dependence of Ho3N@C80q+, q = 1–2, was found to be different from that of C60. Time-dependent density functional theory computations revealed different light-induced ionization mechanisms. Unlike in C60, in doped fullerenes, the breaking of the cage spherical symmetry makes super atomic molecular orbital (SAMO) states optically active. Theoretical calculations suggest that the fast ionization of the SAMO states in Ho3N@C80 is responsible for the n = 3 power law for singly charged parent molecules at intensities lower than 1.2 × 1014 W/cm2.
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Jia D, Manz J, Paulus B, Pohl V, Tremblay JC, Yang Y. Quantum control of electronic fluxes during adiabatic attosecond charge migration in degenerate superposition states of benzene. Chem Phys 2017. [DOI: 10.1016/j.chemphys.2016.09.021] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Thompson LM, Harb H, Hratchian HP. Natural ionization orbitals for interpreting electron detachment processes. J Chem Phys 2016; 144:204117. [DOI: 10.1063/1.4951738] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Affiliation(s)
- Lee M. Thompson
- Chemistry and Chemical Biology, University of California, Merced, California 95343, USA
| | - Hassan Harb
- Chemistry and Chemical Biology, University of California, Merced, California 95343, USA
| | - Hrant P. Hratchian
- Chemistry and Chemical Biology, University of California, Merced, California 95343, USA
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Zhang Y, Hua W, Bennett K, Mukamel S. Nonlinear Spectroscopy of Core and Valence Excitations Using Short X-Ray Pulses: Simulation Challenges. DENSITY-FUNCTIONAL METHODS FOR EXCITED STATES 2014; 368:273-345. [DOI: 10.1007/128_2014_618] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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