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Yuan QS, Xu J, Jiang W, Ou X, Wang H, Guo L, Xiao C, Wang Y, Wang X, Kang C, Zhou T. Insight to shape of soil microbiome during the ternary cropping system of Gastradia elata. BMC Microbiol 2020; 20:108. [PMID: 32370761 PMCID: PMC7201697 DOI: 10.1186/s12866-020-01790-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2020] [Accepted: 04/16/2020] [Indexed: 11/18/2022] Open
Abstract
Background The ternary cropping system of Gastradia elata depends on a symbiotic relationship with the mycorrhizal fungi Armillaria mellea, which decays wood to assimilate nutrition for the growth of G. elata. The composition of microbe flora as key determinants of rhizoshere and mycorrhizoshere soil fertility and health was investigated to understand how G. elata and A. mellea impacted on its composition. The next generation pyrosequencing analysis was applied to assess the shift of structure of microbial community in rhizoshere of G. elata and mycorrhizoshere of A. mellea compared to the control sample under agriculture process. Results The root-associated microbe floras were significantly impacted by rhizocompartments (including rhizoshere and mycorrhizoshere) and agriculture process. Cropping process of G. elata enhanced the richness and diversity of the microbial community in rhizoshere and mycorrhizoshere soil. Furthermore, planting process of G. elata significantly reduced the abundance of phyla Basidiomycota, Firmicutes and Actinobacteria, while increased the abundance of phyla Ascomycota, Chloroflexi, Proteobacteria, Planctomycetes, and Gemmatimonadetes in rhizoshere and mycorrhizoshere. Besides, A. mellea and G. elata significantly enriched several members of saprophytoic and pathogenic fungus (i.e., Exophiala, Leptodontidium, Cosmospora, Cercophora, Metarhizium, Ilyonectria, and Sporothrix), which will enhance the possibility of G. elata disease incidence. At the same time, the ternary cropping system significantly deterred several members of beneficial ectomycorrhizal fungus (i.e., Russula, Sebacina, and Amanita), which will reduce the ability to protect G. elata from diseases. Conclusions In the ternary cropping system of G. elata, A. mellea and G. elata lead to imbalance of microbial community in rhizoshere and mycorrhizoshere soil, suggested that further studies on maintaining the balance of microbial community in A. mellea mycorrhizosphere and G. elata rhizosphere soil under field conditions may provide a promising avenue for high yield and high quality G. elata.
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Affiliation(s)
- Qing-Song Yuan
- Guizhou University of Traditional Chinese Medicine, Dongqingnan Road, Guiyang, 540025, Guizhou, China
| | - Jiao Xu
- Guizhou University of Traditional Chinese Medicine, Dongqingnan Road, Guiyang, 540025, Guizhou, China
| | - Weike Jiang
- Guizhou University of Traditional Chinese Medicine, Dongqingnan Road, Guiyang, 540025, Guizhou, China
| | - Xiaohong Ou
- Guizhou University of Traditional Chinese Medicine, Dongqingnan Road, Guiyang, 540025, Guizhou, China
| | - Hui Wang
- Guizhou University of Traditional Chinese Medicine, Dongqingnan Road, Guiyang, 540025, Guizhou, China
| | - Lanping Guo
- National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, 100700, China
| | - Chenghong Xiao
- Guizhou University of Traditional Chinese Medicine, Dongqingnan Road, Guiyang, 540025, Guizhou, China
| | - Yanhong Wang
- Guizhou University of Traditional Chinese Medicine, Dongqingnan Road, Guiyang, 540025, Guizhou, China
| | - Xiao Wang
- Shandong Analysis and Test Center, Shandong Academic of Sciences, Jinan, 250014, Shandong, China
| | - Chuanzhi Kang
- National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, 100700, China
| | - Tao Zhou
- Guizhou University of Traditional Chinese Medicine, Dongqingnan Road, Guiyang, 540025, Guizhou, China.
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Perazzolli M, Bampi F, Faccin S, Moser M, De Luca F, Ciccotti AM, Velasco R, Gessler C, Pertot I, Moser C. Armillaria mellea induces a set of defense genes in grapevine roots and one of them codifies a protein with antifungal activity. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2010; 23:485-96. [PMID: 20192835 DOI: 10.1094/mpmi-23-4-0485] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Grapevine root rot, caused by Armillaria mellea, is a serious disease in some grape-growing regions. Young grapevines start to show symptoms of Armillaria root rot from the second year after inoculation, suggesting a certain degree of resistance in young roots. We used a suppression subtractive hybridization approach to study grapevine's reactions to the first stages of A. mellea infection. We identified 24 genes that were upregulated in the roots of the rootstock Kober 5BB 24 h after A. mellea challenge. Real-time reverse-transcriptase polymerase chain reaction analysis confirmed the induction of genes encoding protease inhibitors, thaumatins, glutathione S-transferase, and aminocyclopropane carboxylate oxidase, as well as phase-change related, tumor-related, and proline-rich proteins, and gene markers of the ethylene and jasmonate signaling pathway. Gene modulation was generally stronger in Kober 5BB than in Pinot Noir plants, and in vitro inoculation induced higher modulation than in greenhouse Armillaria spp. treatments. The full-length coding sequences of seven of these genes were obtained and expressed as recombinant proteins. The grapevine homologue of the Quercus spp. phase-change-related protein inhibited the growth of A. mellea mycelia in vitro, suggesting that this protein may play an important role in the defense response against A. mellea.
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Affiliation(s)
- Michele Perazzolli
- IASMA Research and Innovation Centre, Fondazione Edmund Mach, Genomics and Crop Biology Area, S. Michele a/Adige, Italy
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Saikia R, Kumar R, Arora DK, Gogoi DK, Azad P. Pseudomonas aeruginosa inducing rice resistance against Rhizoctonia solani: production of salicylic acid and peroxidases. Folia Microbiol (Praha) 2007; 51:375-80. [PMID: 17176755 DOI: 10.1007/bf02931579] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
Three isolates of Pseudomonas aeruginosa were used for seed treatment of rice; all showed plant growth promoting activity and induced systemic resistance in rice against Rhizoctonia solani G5 and increased seed yield. Production of salicylic acid (Sal) by P. aeruginosa both in vitro and in vivo was quantified with high performance liquid chromatography. All three isolates produced more Sal in King's B broth than in induced roots. Using a split root system, more Sal accumulated in root tissues of bacterized site than in distant roots on the opposite site of the root system after 1 d, but this difference decreased after 3 d. Sal concentration 0-200 g/L showed no inhibition of mycelial growth of R. solani in vitro, while at > or =300 g/L it inhibited it. P. aeruginosa-pretreated rice plants challenged inoculation with R. solani (as pathogen), an additional increase in the accumulation of peroxidase was observed. Three pathogenesis-related peroxidases in induced rice plants were detected; molar mass of these purified peroxidases was 28, 36 and 47 kDa. Purified peroxidase showed antifungal activity against phytopathogenic fungi R. solani, Pyricularia oryzae and Helminthosporium oryzae.
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Affiliation(s)
- R Saikia
- Laboratory of Applied Mycology, Centre of Advanced Study in Botany, Banaras Hindu University, Varanasi 221 005, India.
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Lochman J, Mikes V. Ergosterol treatment leads to the expression of a specific set of defence-related genes in tobacco. PLANT MOLECULAR BIOLOGY 2006; 62:43-51. [PMID: 16900324 DOI: 10.1007/s11103-006-9002-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2006] [Accepted: 04/07/2006] [Indexed: 05/10/2023]
Abstract
Ergosterol is the main sterol of most fungi. Production of reactive oxygen species after the treatment of tobacco and tomato cells by nano-molar concentrations of ergosterol was previously observed as well as the activation of some stress activated mitogen-activated protein kinases on alfalfa cells. In this paper, the expression of some defence-related genes after the ergosterol treatment of tobacco Nicotiana tabacum plants is reported. The gene expression of pathogenesis related proteins of families PR1, PR3, PR5 and proteinase inhibitors of class I and II together with enzymes participating in the defence response, such as phenylalanine-ammonia lyase and sesquiterpene cyclase, were monitored by RT-qPCR. In addition, the concentrations of salicylic acid, an important signalling molecule, increased in time due to the enzyme activation. On the other hand, ergosterol did not provoke tissue necrosis and the possible cross-talk between the signalling pathways of salicylate and jasmonate was observed. Collected data shows that ergosterol is able to activate the expression of a number of defence genes and could increase resistance against pathogens.
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Affiliation(s)
- Jan Lochman
- Department of Biochemistry, Faculty of Science, Masaryk University, Kotlarska 2, 61137 , Brno, Czech Republic
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