1
|
Palma M, Mondo S, Pereira M, Vieira É, Grigoriev IV, Sá-Correia I. Genome Sequence and Analysis of the Flavinogenic Yeast Candida membranifaciens IST 626. J Fungi (Basel) 2022; 8:jof8030254. [PMID: 35330255 PMCID: PMC8955749 DOI: 10.3390/jof8030254] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2022] [Revised: 02/26/2022] [Accepted: 02/27/2022] [Indexed: 02/04/2023] Open
Abstract
The ascomycetous yeast Candida membranifaciens has been isolated from diverse habitats, including humans, insects, and environmental sources, exhibiting a remarkable ability to use different carbon sources that include pentoses, melibiose, and inulin. In this study, we isolated four C. membranifaciens strains from soil and investigated their potential to overproduce riboflavin. C. membranifaciens IST 626 was found to produce the highest concentrations of riboflavin. The volumetric production of this vitamin was higher when C. membranifaciens IST 626 cells were cultured in a commercial medium without iron and when xylose was the available carbon source compared to the same basal medium with glucose. Supplementation of the growth medium with 2 g/L glycine favored the metabolization of xylose, leading to biomass increase and consequent enhancement of riboflavin volumetric production that reached 120 mg/L after 216 h of cultivation. To gain new insights into the molecular basis of riboflavin production and carbon source utilization in this species, the first annotated genome sequence of C. membranifaciens is reported in this article, as well as the result of a comparative genomic analysis with other relevant yeast species. A total of 5619 genes were predicted to be present in C. membranifaciens IST 626 genome sequence (11.5 Mbp). Among them are genes involved in riboflavin biosynthesis, iron homeostasis, and sugar uptake and metabolism. This work put forward C. membranifaciens IST 626 as a riboflavin overproducer and provides valuable molecular data for future development of superior producing strains capable of using the wide range of carbon sources, which is a characteristic trait of the species.
Collapse
Affiliation(s)
- Margarida Palma
- Institute for Bioengineering and Biosciences, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal; (M.P.); (É.V.); (I.S.-C.)
- Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal
- Associate Laboratory i4HB—Institute for Health and Bioeconomy at Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal
- Correspondence:
| | - Stephen Mondo
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (S.M.); (I.V.G.)
- Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, USA
| | - Mariana Pereira
- Institute for Bioengineering and Biosciences, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal; (M.P.); (É.V.); (I.S.-C.)
- Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal
| | - Érica Vieira
- Institute for Bioengineering and Biosciences, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal; (M.P.); (É.V.); (I.S.-C.)
- Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal
| | - Igor V. Grigoriev
- US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (S.M.); (I.V.G.)
- Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA 94720, USA
| | - Isabel Sá-Correia
- Institute for Bioengineering and Biosciences, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal; (M.P.); (É.V.); (I.S.-C.)
- Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal
- Associate Laboratory i4HB—Institute for Health and Bioeconomy at Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal
| |
Collapse
|
2
|
Chi Z, Liu GL, Lu Y, Jiang H, Chi ZM. Bio-products produced by marine yeasts and their potential applications. BIORESOURCE TECHNOLOGY 2016; 202:244-252. [PMID: 26724870 DOI: 10.1016/j.biortech.2015.12.039] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2015] [Revised: 12/14/2015] [Accepted: 12/15/2015] [Indexed: 06/05/2023]
Abstract
It has been well documented that the yeasts isolated from different marine environments are so versatile that they can produce various fine chemicals, enzymes, bioactive substances, single cell protein and nanoparticles. Many genes related to the biosynthesis and regulation of these functional biomolecules have been cloned, expressed and characterized. All these functional biomolecules have a variety of applications in industries of food, chemical, agricultural, biofuel, cosmetics and pharmacy. In this review, a summary will be given about these functional biomolecules and their producers of the marine yeasts as well as some related genes in order to draw an outline about necessity for further exploitation of marine yeasts and their bio-products for industrial applications.
Collapse
Affiliation(s)
- Zhe Chi
- College of Marine Life Sciences, Ocean University of China, Yushan Road, No. 5, Qingdao 266003, China
| | - Guang-Lei Liu
- College of Marine Life Sciences, Ocean University of China, Yushan Road, No. 5, Qingdao 266003, China
| | - Yi Lu
- College of Marine Life Sciences, Ocean University of China, Yushan Road, No. 5, Qingdao 266003, China
| | - Hong Jiang
- College of Marine Life Sciences, Ocean University of China, Yushan Road, No. 5, Qingdao 266003, China
| | - Zhen-Ming Chi
- College of Marine Life Sciences, Ocean University of China, Yushan Road, No. 5, Qingdao 266003, China.
| |
Collapse
|
4
|
Zaky AS, Tucker GA, Daw ZY, Du C. Marine yeast isolation and industrial application. FEMS Yeast Res 2014; 14:813-25. [PMID: 24738708 PMCID: PMC4262001 DOI: 10.1111/1567-1364.12158] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2014] [Revised: 04/11/2014] [Accepted: 04/13/2014] [Indexed: 11/29/2022] Open
Abstract
Over the last century, terrestrial yeasts have been widely used in various industries, such as baking, brewing, wine, bioethanol and pharmaceutical protein production. However, only little attention has been given to marine yeasts. Recent research showed that marine yeasts have several unique and promising features over the terrestrial yeasts, for example higher osmosis tolerance, higher special chemical productivity and production of industrial enzymes. These indicate that marine yeasts have great potential to be applied in various industries. This review gathers the most recent techniques used for marine yeast isolation as well as the latest applications of marine yeast in bioethanol, pharmaceutical and enzyme production fields.
Collapse
Affiliation(s)
- Abdelrahman Saleh Zaky
- School of Biosciences, University of NottinghamNottingham, UK
- Department of Microbiology, Faculty of Agriculture, Cairo UniversityGiza, Egypt
| | | | - Zakaria Yehia Daw
- Department of Microbiology, Faculty of Agriculture, Cairo UniversityGiza, Egypt
| | - Chenyu Du
- School of Biosciences, University of NottinghamNottingham, UK
| |
Collapse
|
5
|
Chi ZM, Liu G, Zhao S, Li J, Peng Y. Marine yeasts as biocontrol agents and producers of bio-products. Appl Microbiol Biotechnol 2010; 86:1227-41. [DOI: 10.1007/s00253-010-2483-9] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2009] [Revised: 01/29/2010] [Accepted: 01/29/2010] [Indexed: 10/19/2022]
|