Importance of mixotrophic flagellates during the ice-free season in lakes located along an elevational gradient

Shifts in phytoplankton communities in response to water parameters and large branchiopod filter feeders in kettle hole ponds of farmland landscape

Temporary ponds in agricultural landscapes, highly vulnerable to anthropogenic pressure and climatic variation, constitute unique habitats for microalgae and endangered filter feeders (large branchiopods). Such ponds play a crucial role in the functioning of farmland ecosystem, yet they remain largely understudied. Our study is the first to examine changes in phytoplankton communities in temporary kettle hole ponds in relation to rapid shifts in biotic (large branchiopods) and physical and chemical parameters of water. We conducted our research over a three-year cycle (in nine ponds in western Poland), with sampling starting in spring when inundation usually occurs, and continuing until the ponds dried out. Among 406 phytoplankton taxa (mainly euglenoids, but also diatoms and chlorophytes), locally rare species (e.g. Desmatractum indutum) were noted. When branchiopods occurred in the ponds, the phytoplankton communities shifted towards unicellular chlorophytes. Furthermore, nitrogen forms, temperature, conductivity, and pH were the abiotic factors altering the studied communities. Surprisingly, the diversity of phytoplankton species did not decrease with increasing temperature, which is inconsistent with the trend observed in permanent water bodies. The study identified specific drivers of phytoplankton community structure and dynamics, underscoring their ecological significance and management implications. These insights will be valuable for future conservation strategies of temporary ponds, crucial in sustaining biodiversity in farmland areas.

Light dependence in the phototrophy-phagotrophy balance of constitutive and non-constitutive mixotrophic protists

Mixotrophic protists display contrasting nutritional strategies and are key groups connecting planktonic food webs. They comprise constitutive mixotrophs (CMs) that have an innate photosynthetic ability and non-constitutive mixotrophs (NCMs) that acquire it from their prey. We modelled phototrophy and phagotrophy of two mixotrophic protists as a function of irradiance and prey abundance. We hypothesised that differences in their physiology (constitutive versus non-constitutive mixotrophy) can result in different responses to light gradients. We fitted the models with primary production and bacterivory data from laboratory and field experiments with the nanoflagellate Chrysochromulina parva (CM) and the ciliate Ophrydium naumanni (NCM) from north Andean Patagonian lakes. We found a non-monotonic response of phototrophy and phagotrophy to irradiance in both mixotrophs, which was successfully represented by our models. Maximum values for phototrophy and phagotrophy were found at intermediate irradiance coinciding with the light at the deep chlorophyll maxima in these lakes. At lower and higher irradiances, we found a decoupling between phototrophy and phagotrophy in the NCM while these functions were more coupled in the CM. Our modelling approach revealed the difference between both mixotrophic functional types on the balance between their nutritional strategies under different light scenarios. Thus, our proposed models can be applied to account how changing environmental conditions affect both primary and secondary production within the planktonic microbial food web.

Phytoplankton community composition, carbon sequestration, and associated regulatory mechanisms in a floodplain lake system

Phytoplankton contribute approximately 50% to the global photosynthetic carbon (C) fixation. However, our understanding of the corresponding C sequestration capacity and driving mechanisms associated with each individual phytoplankton taxonomic group is limited. Particularly in the hydrologically dynamic system with highly complex surface hydrological processes (floodplain lake systems). Through investigating seasonal monitoring data in a typical floodplain lake system and estimation of primary productivity of each phytoplankton taxonomic group individually using novel equations, this study proposed a phytoplankton C fixation model. Results showed that dominant phytoplankton communities had a higher gross carbon sequestration potential (CSP) (9.50 ± 5.06 Gg C each stage) and gross primary productivity (GPP) (65.46 ± 25.32 mg C m^-2 d^-1), but a lower net CSP (-1.04 ± 0.79 Gg C each stage) and net primary productivity (NPP) (-5.62 ± 4.93 mg C m^-3 d^-1) than rare phytoplankton communities in a floodplain lake system. Phytoplanktonic GPP was high (317.94 ± 73.28 mg C m^-2 d^-1) during the rainy season and low (63.02 ± 9.65 mg C m^-2 d^-1) during the dry season. However, their NPP reached the highest during the rising-water stage and the lowest during the receding-water stage. Findings also revealed that during the rainy season, high water levels (p = 0.56**) and temperatures (p = 0.37*) as well as strong solar radiation (p = 0.36*) will increase photosynthesis and accelerate metabolism and respiration of dominant phytoplankton communities, then affect primary productivity and CSP. Additionally, water level fluctuations drive changes in nutrients (p = -0.57*) and metals (p = -0.68*) concentrations, resulting in excessive nutrients and metals slowing down phytoplankton growth and reducing GPP. Compared with the static water lake system, the floodplain lake system with a lower net CSP became a heterotrophic C source.

Genomic and metabolic adaptations of biofilms to ecological windows of opportunity in glacier-fed streams

In glacier-fed streams, ecological windows of opportunity allow complex microbial biofilms to develop and transiently form the basis of the food web, thereby controlling key ecosystem processes. Using metagenome-assembled genomes, we unravel strategies that allow biofilms to seize this opportunity in an ecosystem otherwise characterized by harsh environmental conditions. We observe a diverse microbiome spanning the entire tree of life including a rich virome. Various co-existing energy acquisition pathways point to diverse niches and the exploitation of available resources, likely fostering the establishment of complex biofilms during windows of opportunity. The wide occurrence of rhodopsins, besides chlorophyll, highlights the role of solar energy capture in these biofilms while internal carbon and nutrient cycling between photoautotrophs and heterotrophs may help overcome constraints imposed by oligotrophy in these habitats. Mechanisms potentially protecting bacteria against low temperatures and high UV-radiation are also revealed and the selective pressure of this environment is further highlighted by a phylogenomic analysis differentiating important components of the glacier-fed stream microbiome from other ecosystems. Our findings reveal key genomic underpinnings of adaptive traits contributing to the success of complex biofilms to exploit environmental opportunities in glacier-fed streams, which are now rapidly changing owing to global warming.

Phytoplankton communities in temporary ponds under different climate scenarios

Temporary water bodies, especially vernal pools, are the most sensitive aquatic environments to climate change yet the least studied. Their functioning largely depends on their phytoplankton community structure. This study aimed to determine how temperature and photoperiod length (by simulating inundation in different parts of the year under five climate scenarios) affect the succession and structure of phytoplankton communities soon after inundation. Photoperiod was the most important factor affecting phytoplankton species richness, total abundance and the abundance of taxonomic groups in the course of succession. A long photoperiod (16 h) and a moderate temperature (16 °C) in vernal pool microcosms (late spring inundation after a warm snowless winter) were the most favourable conditions for phytoplankton growth (especially for the main taxonomic groups: chlorophytes and cryptophytes) and species richness. With short photoperiods (inundation in winter) and low temperatures, the communities transformed towards diatoms, euglenoids and cyanobacteria. In line with our predictions, a high temperature (25 °C) favoured a decline in phytoplankton species diversity. Our study shows that climate change will result in seasonal shifts in species abundance or even in their disappearance and, finally, in potential strong changes in the biodiversity and food webs of aquatic ecosystems in the future.

Patterns of protist distribution and diversification in alpine lakes across Europe

Biogeography in Europe is known to be crucially influenced by the large mountain ranges serving as biogeographical islands for cold-adapted taxa and geographical barriers for warm-adapted taxa. While biogeographical patterns are well-known for plants and animals in Europe, we here investigated diversity and distribution patterns of protist freshwater communities on a European scale (256 lakes) in the light of the well-studied post-glacial distribution patterns of macroorganisms. Thus, our study compared 43 alpine protist communities of lakes located in the Alps, Carpathians, Pyrenees, and the Sierra Nevada with that of surrounding lowland lakes. We verified altitudinal diversity gradients of freshwater protists with decreasing richness and diversity across altitudes similar to those observed for plants and animals. Alpine specialists and generalists could be identified differing significantly in richness and diversity, but hardly in occurrence and proportions of major taxonomic groups. High proportions of region-specific alpine specialists indicate an increased occurrence of distinct lineages within each mountain range and thus, suggested either separated glacial refugia or post-glacial diversification within mountain ranges. However, a few alpine specialists were shared between mountain ranges suggesting a post-glacial recolonization from a common lowland pool. Our results identified generalists with wide distribution ranges and putatively wide tolerance ranges toward environmental conditions as main drivers of protist diversification (specification) in alpine lakes, while there was hardly any diversification in alpine specialists.

Assessing the response of micro-eukaryotic diversity to the Great Acceleration using lake sedimentary DNA

Long-term time series have provided evidence that anthropogenic pressures can threaten lakes. Yet it remains unclear how and the extent to which lake biodiversity has changed during the Anthropocene, in particular for microbes. Here, we used DNA preserved in sediments to compare modern micro-eukaryotic communities with those from the end of the 19th century, i.e., before acceleration of the human imprint on ecosystems. Our results obtained for 48 lakes indicate drastic changes in the composition of microbial communities, coupled with a homogenization of their diversity between lakes. Remote high elevation lakes were globally less impacted than lowland lakes affected by local human activity. All functional groups (micro-algae, parasites, saprotrophs and consumers) underwent significant changes in diversity. However, we show that the effects of anthropogenic changes have benefited in particular phototrophic and mixotrophic species, which is consistent with the hypothesis of a global increase of primary productivity in lakes.

Interacting Temperature, Nutrients and Zooplankton Grazing Control Phytoplankton Size-Abundance Relationships in Eight Swiss Lakes

Biomass distribution among size classes follows a power law where the Log-abundance of taxa scales to Log-size with a slope that responds to environmental abiotic and biotic conditions. The interactions between ecological mechanisms controlling the slope of locally realized size-abundance relationships (SAR) are however not well understood. Here we tested how warming, nutrient levels, and grazing affect the slope of phytoplankton community SARs in decadal time-series from eight Swiss lakes of the peri-alpine region, which underwent environmental forcing due to climate change and oligotrophication. We expected rising temperature to have a negative effect on slope (favoring small phytoplankton), and increasing nutrient levels and grazing pressure to have a positive effect (benefiting large phytoplankton). Using a random forest approach to extract robust patterns from the noisy data, we found that the effects of temperature (direct and indirect through water column stability), nutrient availability (phosphorus and total biomass), and large herbivore (copepods and daphnids) grazing and selectivity on slope were non-linear and interactive. Increasing water temperature or total grazing pressure, and decreasing phosphorus levels, had a positive effect on slope (favoring large phytoplankton, which are predominantly mixotrophic in the lake dataset). Our results therefore showed patterns that were opposite to the expected long-term effects of temperature and nutrient levels, and support a paradigm in which (i) small phototrophic phytoplankton appear to be favored under high nutrients levels, low temperature and low grazing, and (ii) large mixotrophic algae are favored under oligotrophic conditions when temperature and grazing pressure are high. The effects of temperature were stronger under nutrient limitation, and the effects of nutrients and grazing were stronger at high temperature. Our study shows that the phytoplankton local SARs in lakes respond to both the independent and the interactive effects of resources, grazing and water temperature in a complex, unexpected way, and observations from long-term studies can deviate significantly from general theoretical expectations.

Uncoupled phytoplankton-bacterioplankton relationship by multiple drivers interacting at different temporal scales in a high-mountain Mediterranean lake

Global-change stressors act under different timing, implying complexity and uncertainty in the study of interactive effects of multiple factors on planktonic communities. We manipulated three types of stressors acting in different time frames in an in situ experiment: ultraviolet radiation (UVR); phosphorus (P) concentration; temperature (T) in an oligotrophic Mediterranean high-mountain lake. The aim was to examine how the sensitivity of phytoplankton and bacterioplankton to UVR and their trophic relationship change under nutrient acclimation and abrupt temperature shifts. Phytoplankton and bacteria showed a common pattern of metabolic response to UVR × P addition interaction, with an increase in their production rates, although evidencing an inhibitory UVR effect on primary production (PP) but stimulatory on bacterial production (HBP). An abrupt T shift in plankton acclimated to UVR and P addition decreased the values of PP, evidencing an inhibitory UVR effect, whereas warming increased HBP and eliminated the UVR effect. The weakening of commensalistic and predatory relationship between phyto- and bacterioplankton under all experimental conditions denotes the negative effects of present and future global-change conditions on planktonic food webs towards impairing C flux within the microbial loop.