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Gültekin E, Bekircan O, Kara Y, Güler Hİ, Soylu MS, Kolaylı S. 1,3,4-Thiadiazole and 1,2,4-triazole-5-thione derivatives bearing 2-pentyl-5-phenyl-2,4-dihydro-3H-1,2,4-triazole-3-one ring: Synthesis, molecular docking, urease inhibition, and crystal structure. Arch Pharm (Weinheim) 2023; 356:e2200355. [PMID: 36316247 DOI: 10.1002/ardp.202200355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 10/06/2022] [Accepted: 10/07/2022] [Indexed: 01/03/2023]
Abstract
Two series of 1,3,4-thiadiazole (40a-o) and 1,2,4-triazole-5-thione (41a-l) derivatives bearing a 2-pentyl-5-phenyl-1,2,4-triazole-3-one ring were synthesized and then studied for their urease inhibitory activities using thiourea as a standard drug. Among the two groups, the first group (40a-o) did not show good activity while the second group (41a-l) showed excellent activity. Compound 41j (1091.24 ± 14.02 µM) of the second series of compounds showed lower activity than thiourea, while the remaining 11 compounds (41a-i, k, and l) showed better activity than thiourea (183.92 ± 13.14 µM). Among the 11 compounds, 41b (15.96 ± 2.28 µM) having the 3-F group on the phenyl ring showed the highest inhibitory activity. Urease kinetic studies of 41b, which is the most active compound, determined it to have an un-competitive inhibition potential. Moreover, in silico analysis against urease from jack bean with 27 new heterocyclic compounds and the reference molecule was carried out to see the necessary interactions responsible for urease activity. The docking calculations of all compounds supported stronger binding to the receptor than the reference molecule, with high inhibition constants. In addition, compound 40m was characterized by single-crystal X-ray diffraction analysis. X-ray analysis reveals that the structures of the compound 40m crystallize in the monoclinic P21/c space group with the cell parameters: a = 10.2155(9) Å, b = 22.1709(18) Å, c = 21.4858(17) Å, β = 99.677(8)°, V = 4797.0(7) Å3 . X-ray diffraction analyses were also performed to gain insights into the role of weak intermolecular interactions and C-H…X (halogen) interactions in compound 40m that influence the crystal packing.
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Affiliation(s)
- Ergün Gültekin
- Science Technology Research and Application Center, Artvin Coruh University, Artvin, Turkey
| | - Olcay Bekircan
- Department of Chemistry, Faculty of Science, Karadeniz Technical University, Trabzon, Turkey
| | - Yakup Kara
- Department of Chemistry, Faculty of Science, Karadeniz Technical University, Trabzon, Turkey
| | - Halil İbrahim Güler
- Department of Molecular Biology and Genetics, Faculty of Science, Karadeniz Technical University, Trabzon, Turkey
| | - Mustafa Serkan Soylu
- Department of Physics, Art and Science Faculty, Giresun University, Giresun, Turkey
| | - Sevgi Kolaylı
- Department of Chemistry, Faculty of Science, Karadeniz Technical University, Trabzon, Turkey
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Funda Tay N, Berk B, Duran M, Kayagil İ, Yurttaş L, Biltekin Kaleli SN, Yamaç M, Karaduman AB, Demirayak Ş. Synthesis, antimicrobial activity and modeling studies of thiazoles bearing pyridyl and triazolyl scaffolds. Z NATURFORSCH C 2022; 77:429-446. [PMID: 35472438 DOI: 10.1515/znc-2022-0002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Accepted: 03/28/2022] [Indexed: 11/15/2022]
Abstract
In this study, novel 4-(5-((2/3/4-substituted benzyl)thio)-4-(4-substituted phenyl)-4H-1,2,4-triazol-3-yl)-2-(pyridin-3/4-yl)thiazoles were synthesized following a multi-step synthetic procedure. All the compounds were screened with a panel of gram positive/negative bacteria, yeasts, and molds for antimicrobial activity using the disc diffusion method. Then, the minimum inhibitor concentration (MIC) and the minimum bactericidal concentration (MBC) values of active compounds were determined against Micrococcus luteus, Bacillus cereus, Listeria monocytogenes, and Staphylococcus aureus using the broth microdilution technique. These compounds were also screened for their inhibitory activities against S. aureus DNA gyrase by supercoiling assay. Furthermore, the crystal structure of S. aureus DNA gyrase B ATPase was subjected to a docking experiment to identify the possible interactions between the most active ligand and the active site. Lastly, the in silico technique was performed to analyze and predict the drug-likeness, molecular and ADME properties of the synthesized molecules.
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Affiliation(s)
- Naime Funda Tay
- Department of Chemistry, Faculty of Science and Letters, Eskisehir Osmangazi University, TR 26480 Eskisehir, Turkey
| | - Barkın Berk
- Department of Pharmaceutical Chemistry, School of Pharmacy, İstanbul Medipol University, 34083 Istanbul, Turkey
| | - Murat Duran
- Department of Chemistry, Faculty of Science and Letters, Eskisehir Osmangazi University, TR 26480 Eskisehir, Turkey
| | - İsmail Kayagil
- Department of Chemistry, Faculty of Arts & Science, Mehmet Akif Ersoy University, 15030 Burdur, Turkey
| | - Leyla Yurttaş
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Anadolu University, 26470 Eskisehir, Turkey
| | - Sevde Nur Biltekin Kaleli
- Department of Pharmaceutical Microbiology, School of Pharmacy, İstanbul Medipol University, 34083 Istanbul, Turkey
| | - Mustafa Yamaç
- Department of Biology, Faculty of Science and Letters, Eskisehir Osmangazi University, TR 26480 Eskisehir, Turkey
| | | | - Şeref Demirayak
- Department of Pharmaceutical Chemistry, School of Pharmacy, İstanbul Medipol University, 34083 Istanbul, Turkey
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Tay NF, Duran M, Kayagil İ, Yurttaş L, Göger G, Göger F, Demirci F, Demirayak Ş. Synthesis, antimicrobial and antioxidant activities of pyridyl substituted thiazolyl triazole derivatives. BRAZ J PHARM SCI 2022. [DOI: 10.1590/s2175-97902022e191026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Affiliation(s)
| | | | | | | | | | | | - Fatih Demirci
- Anadolu University, Turkey; Eastern Mediterranean University, Turkey
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García-Vanegas JJ, Rodríguez-Florencio J, Cifuentes-Castañeda DD, Mendieta-Zerón H, Pavón-Romero S, Morales-Rodríguez M, Corona-Becerril D, Cuevas-Yañez E. Synthesis and Antifungal Activity Evaluation of 1-sulfonyl-1,2,3-triazoles. Pharm Chem J 2021. [DOI: 10.1007/s11094-021-02460-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Synthesis and antitumor effects of a new class of 1,2,4-triazole derivatives. Med Chem Res 2020. [DOI: 10.1007/s00044-020-02652-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Synthesis and bioassay of a new class of disubstituted 1,3,4-oxadiazoles, 1,3,4-thiadiazoles and 1,2,4-triazoles. Med Chem Res 2019. [DOI: 10.1007/s00044-019-02360-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Pachuta‐Stec A, Nowak R, Pietrzak W, Pitucha M. Synthesis and Antioxidant Activity of New Norcantharidin Analogs. Chem Biodivers 2019; 16:e1800673. [DOI: 10.1002/cbdv.201800673] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Accepted: 02/07/2019] [Indexed: 12/29/2022]
Affiliation(s)
- Anna Pachuta‐Stec
- Independent Radiopharmacy Unit, Faculty of Pharmacy with Medical Analytics DivisionMedical University of Lublin 4 A Chodźki Street PL-20-093 Lublin Poland
| | - Renata Nowak
- Department of Pharmaceutical Botany, Faculty of Pharmacy with Medical Analytics DivisionMedical University of Lublin 1 Chodźki Street PL-20-093 Lublin Poland
| | - Wioleta Pietrzak
- Department of Pharmaceutical Botany, Faculty of Pharmacy with Medical Analytics DivisionMedical University of Lublin 1 Chodźki Street PL-20-093 Lublin Poland
| | - Monika Pitucha
- Independent Radiopharmacy Unit, Faculty of Pharmacy with Medical Analytics DivisionMedical University of Lublin 4 A Chodźki Street PL-20-093 Lublin Poland
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Design, synthesis, structure elucidation and in vitro antiviral and antimicrobial evaluation. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2018. [DOI: 10.1007/s13738-017-1283-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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BAYRAK HE, BULUT VN, TÜFEKÇİ M, BAYRAK H, DURAN C, SOYLAK M. Comparative study for the separation, preconcentration, and determination of copper and cadmium in real samples by using two different ligands. Turk J Chem 2016. [DOI: 10.3906/kim-1505-11] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
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