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Hallahan BF. One Hundred Years of Progress and Pitfalls: Maximising Heterosis through Increasing Multi-Locus Nuclear Heterozygosity. BIOLOGY 2024; 13:817. [PMID: 39452126 PMCID: PMC11504056 DOI: 10.3390/biology13100817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2024] [Revised: 10/04/2024] [Accepted: 10/08/2024] [Indexed: 10/26/2024]
Abstract
The improvement in quantitative traits (e.g., yield, size) in F1 offspring over parent lines is described as hybrid vigour, or heterosis. There exists a fascinating relationship between parental genetic distance and genome dosage (polyploidy), and heterosis effects. The contribution of nuclear heterozygosity to heterosis is not uniform across diploid and polyploid crops, even within same species, thus demonstrating that polyploid crops should be part of any discussion on the mechanisms of heterosis. This review examines the records of correlating heterosis with parental genetic distance and the influence of adding supplementary genomes in wide crosses. Increasing nuclear heterozygosity through parental genetic distance has been shown to be an imperfect predictor for heterosis in a variety of commercial crops such as maize, rice, and pepper. However, increasing the ploidy level raises the maximum number of alleles that can be harboured at any one locus, and studies on crops such as oilseed rape, potato, alfalfa, maize, and rice have demonstrated that heterosis may be maximised upon increasing multi-locus nuclear heterozygosity. The novel heterotic phenotypes observed above the diploid level will contribute to our understanding on the mechanisms of heterosis and aid plant breeders in achieving the righteous goal of producing more food with fewer inputs.
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Affiliation(s)
- Brendan F Hallahan
- Public Analyst's Laboratory, St. Finbarr's Hospital, Cork T12 XH60, Ireland
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Geng X, Qu Y, Jia Y, He S, Pan Z, Wang L, Du X. Assessment of heterosis based on parental genetic distance estimated with SSR and SNP markers in upland cotton (Gossypium hirsutum L.). BMC Genomics 2021; 22:123. [PMID: 33602146 PMCID: PMC7891138 DOI: 10.1186/s12864-021-07431-6] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Accepted: 02/08/2021] [Indexed: 11/16/2022] Open
Abstract
BACKGROUND Heterosis has been extensively utilized in different crops and made a significant contribution to global food security. Genetic distance (GD) is one of the valuable criteria for selecting parents in hybrid breeding. The objectives of this study were to estimate the GD between parents using both simple sequence repeat (SSR) markers and single nucleotide polymorphism (SNP) markers and to investigate the efficiency of the prediction of hybrid performance based on GD. The experiment comprised of four male parents, 282 female parents and 1128 F1, derived from NCII mating scheme. The hybrids, their parents and two check cultivars were evaluated for two years. Performance of F1, mid-parent heterosis (MPH), and best parent heterosis (BPH) were evaluated for ten agronomic and fiber quality traits, including plant height, boll weight, boll number, lint percentage, fiber length, fiber strength, fiber uniformity, fiber elongation ratio, micronaire, and spinning consistent index. RESULTS Heterosis was observed in all hybrids and, the traits like plant height, boll number, boll weight and lint percentage exhibited higher heterosis than the fiber quality traits. Correlations were significant between parental and F1 performances. The F1 performances between three hybrid sets (Elite×Elite, Exotic×Elite, and Historic×Elite) showed significant differences in eight traits, including boll number, lint percentage, fiber length, fiber strength, fiber uniformity, fiber elongation ratio, micronaire, and spinning consistent index. The correlation of the GD assessed by both SSR and SNP markers was significantly positive. The cluster analysis based on GD results estimated using SNP showed that all the female parents divided into five groups and the F1 performance between these five groups showed significant differences in four traits, including lint percentage, micronaire, fiber strength, and fiber elongation ratio. The correlation between GD and F1 performance, MPH and BPH were significant for lint percentage and micronaire. CONCLUSIONS Our results suggested that GD between parents could be helpful in heterosis prediction for certain traits. This study reveals that molecular marker analysis can serve as a basis for assigning germplasm into heterotic groups and to provide guidelines for parental selection in hybrid cotton breeding.
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Affiliation(s)
- Xiaoli Geng
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Zhengzhou University, Zhengzhou, 450001, China
| | - Yujie Qu
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China
| | - Yinhua Jia
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Zhengzhou University, Zhengzhou, 450001, China
| | - Shoupu He
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Zhengzhou University, Zhengzhou, 450001, China
| | - Zhaoe Pan
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China
| | - Liru Wang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China
| | - Xiongming Du
- State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Zhengzhou University, Zhengzhou, 450001, China.
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Gabriel-Ortega J, Burgos-López G, Barahona-Cajape N, Castro-Piguave C, Vera-Tumbaco M, Morán-Morán J. Obtención de semilla híbrida de melón ( Cucumis melo L.) en invernadero. JOURNAL OF THE SELVA ANDINA RESEARCH SOCIETY 2021. [DOI: 10.36610/j.jsars.2021.120100038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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K. Srivastava R, Bollam S, Pujarula V, Pusuluri M, Singh RB, Potupureddi G, Gupta R. Exploitation of Heterosis in Pearl Millet: A Review. PLANTS (BASEL, SWITZERLAND) 2020; 9:E807. [PMID: 32605134 PMCID: PMC7412370 DOI: 10.3390/plants9070807] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Revised: 06/23/2020] [Accepted: 06/23/2020] [Indexed: 01/06/2023]
Abstract
The phenomenon of heterosis has fascinated plant breeders ever since it was first described by Charles Darwin in 1876 in the vegetable kingdom and later elaborated by George H Shull and Edward M East in maize during 1908. Heterosis is the phenotypic and functional superiority manifested in the F1 crosses over the parents. Various classical complementation mechanisms gave way to the study of the underlying potential cellular and molecular mechanisms responsible for heterosis. In cereals, such as maize, heterosis has been exploited very well, with the development of many single-cross hybrids that revolutionized the yield and productivity enhancements. Pearl millet (Pennisetum glaucum (L.) R. Br.) is one of the important cereal crops with nutritious grains and lower water and energy footprints in addition to the capability of growing in some of the harshest and most marginal environments of the world. In this highly cross-pollinating crop, heterosis was exploited by the development of a commercially viable cytoplasmic male-sterility (CMS) system involving a three-lines breeding system (A-, B- and R-lines). The first set of male-sterile lines, i.e., Tift 23A and Tift18A, were developed in the early 1960s in Tifton, Georgia, USA. These provided a breakthrough in the development of hybrids worldwide, e.g., Tift 23A was extensively used by Punjab Agricultural University (PAU), Ludhiana, India, for the development of the first single-cross pearl millet hybrid, named Hybrid Bajra 1 (HB 1), in 1965. Over the past five decades, the pearl millet community has shown tremendous improvement in terms of cytoplasmic and nuclear diversification of the hybrid parental lines, which led to a progressive increase in the yield and adaptability of the hybrids that were developed, resulting in significant genetic gains. Lately, the whole genome sequencing of Tift 23D2B1 and re-sequencing of circa 1000 genomes by a consortium led by the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) has been a significant milestone in the development of cutting-edge genetic and genomic resources in pearl millet. Recently, the application of genomics and molecular technologies has provided better insights into genetic architecture and patterns of heterotic gene pools. Development of whole-genome prediction models incorporating heterotic gene pool models, mapped traits and markers have the potential to take heterosis breeding to a new level in pearl millet. This review discusses advances and prospects in various fronts of heterosis for pearl millet.
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Affiliation(s)
- Rakesh K. Srivastava
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad TS 502324, India; (S.B.); (V.P.); (M.P.); (R.B.S.); (G.P.)
| | | | | | | | | | | | - Rajeev Gupta
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad TS 502324, India; (S.B.); (V.P.); (M.P.); (R.B.S.); (G.P.)
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Gupta SK, Patil KS, Rathore A, Yadav DV, Sharma LD, Mungra KD, Patil HT, Gupta SK, Kumar R, Chaudhary V, Das RR, Kumar A, Singh V, Srivastava RK, Gupta R, Boratkar M, Varshney RK, Rai KN, Yadav OP. Identification of heterotic groups in South-Asian-bred hybrid parents of pearl millet. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2020; 133:873-888. [PMID: 31897515 DOI: 10.1007/s00122-019-03512-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Accepted: 12/13/2019] [Indexed: 05/09/2023]
Abstract
Pearl millet breeding programs can use this heterotic group information on seed and restorer parents to generate new series of pearl millet hybrids having higher yields than the existing hybrids. Five hundred and eighty hybrid parents, 320 R- and 260 B-lines, derived from 6 pearl millet breeding programs in India, genotyped following RAD-GBS (about 0.9 million SNPs) clustered into 12 R- and 7 B-line groups. With few exceptions, hybrid parents of all the breeding programs were found distributed across all the marker-based groups suggesting good diversity in these programs. Three hundred and twenty hybrids generated using 37 (22 R and 15 B) representative parents, evaluated for grain yield at four locations in India, showed significant differences in yield, heterosis, and combining ability. Across all the hybrids, mean mid- and better-parent heterosis for grain yield was 84.0% and 60.5%, respectively. Groups G12 B × G12 R and G10 B × G12 R had highest heterosis of about 10% over best check hybrid Pioneer 86M86. The parents involved in heterotic hybrids were mainly from the groups G4R, G10B, G12B, G12R, and G13B. Based on the heterotic performance and combining ability of groups, 2 B-line (HGB-1 and HGB-2) and 2 R-line (HGR-1 and HGR-2) heterotic groups were identified. Hybrids from HGB-1 × HGR-1 and HGB-2 × HGR-1 showed grain yield heterosis of 10.6 and 9.3%, respectively, over best hybrid check. Results indicated that parental groups can be formed first by molecular markers, which may not predict the best hybrid combination, but it can reveal a practical value of assigning existing and new hybrid pearl millet parental lines into heterotic groups to develop high-yielding hybrids from the different heterotic groups.
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Affiliation(s)
- S K Gupta
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India.
| | - K Sudarshan Patil
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - Abhishek Rathore
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - Dev Vart Yadav
- Chaudhary Charan Singh Haryana Agricultural University (CCSHAU), Hisar, Haryana, India
| | - L D Sharma
- Sri Karan Narendra Agriculture University (SKNAU), Durgapura, Rajasthan, India
| | - K D Mungra
- Junagadh Agricultural University (JAU), Jamnagar, Gujarat, India
| | - H T Patil
- Mahatma Phule Krishi Vidyapeeth (MPKV), Dhule, Maharashtra, India
| | | | - Ramesh Kumar
- Chaudhary Charan Singh Haryana Agricultural University (CCSHAU), Hisar, Haryana, India
| | - Vaibhav Chaudhary
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - Roma R Das
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - Anil Kumar
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - Vikas Singh
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
- International Rice Research Institute (IRRI), South Asia Hub, ICRISAT, Hyderabad, Telangana, India
| | - Rakesh K Srivastava
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - Rajeev Gupta
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - M Boratkar
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - Rajeev K Varshney
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - K N Rai
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, Telangana, India
| | - O P Yadav
- ICAR-Central Arid Zone Research Institute (CAZRI), Jodhpur, Rajasthan, India
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Tomkowiak A, Bocianowski J, Kwiatek M, Kowalczewski PŁ. Dependence of the Heterosis Effect on Genetic Distance, Determined using Various Molecular Markers. Open Life Sci 2020; 15:1-11. [PMID: 33987466 PMCID: PMC8114616 DOI: 10.1515/biol-2020-0001] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Accepted: 12/03/2019] [Indexed: 11/15/2022] Open
Abstract
A number of studies have shown that the greater the genetic diversity of parental lines, the greater the heterosis effect. Genetic or phenotypic variation can be estimated by genotype testing on the basis of the observations obtained through prediction (a priori) or the observations and studies (a posteriori). The first method uses data such as the genealogy of a given subject and the information about its geographical origin. The second method is based on the phenotypic observation and studies, as well as on the molecular research. The development of molecular genetics and genotype testing methods at the DNA level has made it possible to rapidly assess the genetic variability regardless of the modifying effect of the environment. The aim of this study was to determine the relationship between the degree of relatedness and the DNA polymorphism (determined using AFLP, RAPD, and SSR markers) of inbred maize lines and the effect of hybrid-form heterosis. Our analysis demonstrated that the parental components for heterosis crosses can be selected on the basis of the genetic similarity determined using the molecular SSR markers and the Jaccard, Kluczyński, Nei, and Rogers coefficients. Molecular AFLP markers proved less useful for selecting the parental components, but may be used to group lines with incomplete origin data. In the case of the RAPD markers, no clear relationship between genetic distance and the heterosis effect was found in this study.
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Affiliation(s)
- Agnieszka Tomkowiak
- Department of Genetics and Plant Breeding, Poznań University of Life Sciences, 11 Dojazd Street, 60-632 Poznań, Poland
| | - Jan Bocianowski
- Department of Mathematical and Statistical Methods, Poznań University of Life Sciences, 28 Wojska Polskiego Street, 60-637 Poznań, Poland
| | - Michał Kwiatek
- Department of Genetics and Plant Breeding, Poznań University of Life Sciences, 11 Dojazd Street, 60-632 Poznań, Poland
| | - Przemysław Łukasz Kowalczewski
- Institute of Food Technology of Plant Origin, Poznań University of Life Sciences, 31 Wojska Polskiego Street, 60-624 Poznań, Poland
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Napolitano M, Terzaroli N, Kashyap S, Russi L, Jones-Evans E, Albertini E. Exploring Heterosis in Melon ( Cucumis melo L.). PLANTS 2020; 9:plants9020282. [PMID: 32098173 PMCID: PMC7076541 DOI: 10.3390/plants9020282] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 02/10/2020] [Accepted: 02/18/2020] [Indexed: 11/16/2022]
Abstract
Heterosis is the superiority of an F1 hybrid over its parents. Since this phenomenon is still unclear in melon, a half diallel experiment based on eight genetically distant breeding lines was conducted in six environments of Central Italy, assessing commercially important traits: yield, total soluble solids (TSS), and days to ripening (DTR). To estimate the additive (general combining ability; GCA) and the non-additive gene effects (specific combining ability; SCA), yield was analyzed by Griffing's methods two and four, and the results were compared to the GGE (Genotype plus Genotype by Environment interaction) biplot methodology; TSS and earliness were evaluated only by Griffing's method four. Overall, GCAs were significantly more relevant than SCAs for all examined traits. Least square means (LsM), mid-parent heterosis (MPH), best-parent heterosis (BPH), as well as Euclidean and Mahalanobis' distances were calculated and compared with the genetic distance (GD). As a few correlations were found statistically significant (only for TSS), it was difficult to predict the value of a hybrid combination only by knowing the genetic distance of its parents. Despite this, heterosis was observed, indicating either the presence of epistatic effects (additive × additive interactions) and/or an underestimate of SCAs embedded within Griffing's method. The significant Env × Entries source of variation suggests development of hybrids in specific environments. The results are discussed with a breeding perspective.
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Affiliation(s)
- Marco Napolitano
- Bayer, Kaiser-Wilhelm-Allee 1, 51373 Leverkusen, Germany; (M.N.); (S.K.); (E.J.-E.)
| | - Niccolò Terzaroli
- Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Università degli Studi di Perugia, Borgo XX Giugno 74, 06121 Perugia, Italy; (N.T.); (E.A.)
| | - Subash Kashyap
- Bayer, Kaiser-Wilhelm-Allee 1, 51373 Leverkusen, Germany; (M.N.); (S.K.); (E.J.-E.)
| | - Luigi Russi
- Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Università degli Studi di Perugia, Borgo XX Giugno 74, 06121 Perugia, Italy; (N.T.); (E.A.)
- Correspondence:
| | - Elen Jones-Evans
- Bayer, Kaiser-Wilhelm-Allee 1, 51373 Leverkusen, Germany; (M.N.); (S.K.); (E.J.-E.)
| | - Emidio Albertini
- Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Università degli Studi di Perugia, Borgo XX Giugno 74, 06121 Perugia, Italy; (N.T.); (E.A.)
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Singh S, Dey SS, Bhatia R, Kumar R, Sharma K, Behera TK. Heterosis and combining ability in cytoplasmic male sterile and doubled haploid based Brassica oleracea progenies and prediction of heterosis using microsatellites. PLoS One 2019; 14:e0210772. [PMID: 31425498 PMCID: PMC6699688 DOI: 10.1371/journal.pone.0210772] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2018] [Accepted: 08/06/2019] [Indexed: 12/17/2022] Open
Abstract
In Brassica oleracea, heterosis is the most efficient tool providing impetus to hybrid vegetable industry. In this context, we presented the first report on identifying superior heterotic crosses for yield and commercial traits in cauliflower involving cytoplasmic male sterile (CMS) and doubled haploid (DH) lines as parents. We studied the suitability of genomic-SSRs and EST-SSRs based genetic distance (GD) and agronomic trait based phenotypic distance (PD) for predicting heterosis in F1 hybrids using CMS and DH based parents. 120 F1 hybrids derived from 20Ogura based CMS lines and 6 DH based testers were evaluated for 16 agronomic traits along with the 26 parental lines and 4 commercial standard checks. The genomic-SSRs and EST-SSRs based genetic structure analysis grouped the 26 parental lines into 4 distinct clusters. The CMS lines Ogu118-6A, Ogu33A, Ogu34-1A were good general combiner for developing early maturity hybrids. The SCA effects were significantly associated with heterosis suggesting non-additive gene effects for the heterotic response of hybrids. Less than unity value of σ2A/D coupled with σ2gca/σ2sca indicated the predominance of non-additive gene action in the expression of studied traits. The correlation analysis of genetic distance with heterosis for commercial traits suggested that microsatellites based genetic distance estimates can be helpful in heterosis prediction to some extent.
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Affiliation(s)
- Saurabh Singh
- Division of Vegetable Science, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - S. S. Dey
- Division of Vegetable Science, ICAR-Indian Agricultural Research Institute, New Delhi, India
- * E-mail:
| | - Reeta Bhatia
- Division of Floriculture and Landscaping, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Raj Kumar
- Division of Vegetable Science, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Kanika Sharma
- ICAR-Indian Agricultural Research Institute, Regional Station, Katrain, Kullu, Himachal Pradesh, India
| | - T. K. Behera
- Division of Vegetable Science, ICAR-Indian Agricultural Research Institute, New Delhi, India
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Singh S, Gupta SK. Formation of heterotic pools and understanding relationship between molecular divergence and heterosis in pearl millet [Pennisetum glaucum (L.) R. Br.]. PLoS One 2019; 14:e0207463. [PMID: 31063504 PMCID: PMC6504090 DOI: 10.1371/journal.pone.0207463] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Accepted: 04/21/2019] [Indexed: 11/30/2022] Open
Abstract
The present investigation was made to generate information on the heterotic pools amongst pearl millet hybrid parents. A set of 17 representative parents was selected from a diverse set of 147 hybrid parents using SSR based genetic distance (GD) and clustering pattern; 136 hybrids were developed in diallel fashion and evaluated at two locations in India. Moderate positive significant correlation (r = 0.37, p<0.01) and (r = 0.33, p<0.01) was found between GD and mid-parent heterosis (MPH) and better-parent heterosis (BPH), respectively, for grain yield for all the hybrids. Higher correlation between genetically closer individuals was observed for grain yield heterosis when the parents of B- and R- crosses had lesser genetic distance (<0.68 GD) in comparison to those parental combinations having GD higher than 0.68, indicating that the GD based predictions for grain yield are better when the parents are genetically related than when they are genetically diverse. In this study, all the pearl millet hybrid parents seems to exist in two broad-based heterotic pools; one each represented by seed and restorer parents as B × R hybrids showed highest mean heterosis for grain yield than either of B × B or R × R crosses. Further, four heterotic pools have been identified in this diverse set of hybrid parents of pearl millet, two each for seed parents (HPB1 and HPB2) and for restorer parents (HPR3 and HPR4). Among these, HPB1 × HPR3 was identified having the highest heterotic level, and could be further used to develop higher yielding pearl millet hybrids.
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Affiliation(s)
- Satbeer Singh
- International Crops Research Institute for the Semi-Arid Tropics, Patancheru, Telangana, India
- Department of Genetics and Plant Breeding, Chaudhary Charan Singh Haryana Agricultural University, Hisar, India
| | - Shashi Kumar Gupta
- International Crops Research Institute for the Semi-Arid Tropics, Patancheru, Telangana, India
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Gupta SK, Nepolean T, Shaikh CG, Rai K, Hash CT, Das RR, Rathore A. Phenotypic and molecular diversity-based prediction of heterosis in pearl millet (Pennisetum glaucum L. (R.) Br.). ACTA ACUST UNITED AC 2018. [DOI: 10.1016/j.cj.2017.09.008] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Jensen C, Ørsted M, Kristensen TN. Effects of genetic distance on heterosis in a Drosophila melanogaster model system. Genetica 2018; 146:345-359. [PMID: 29761415 DOI: 10.1007/s10709-018-0026-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2017] [Accepted: 05/08/2018] [Indexed: 11/27/2022]
Abstract
Habitat fragmentation and small population sizes can lead to inbreeding and loss of genetic variation, which can potentially cause inbreeding depression and decrease the ability of populations to adapt to altered environmental conditions. One solution to these genetic problems is the implementation of genetic rescue, which re-establishes gene flow between separated populations. Similar techniques are being used in animal and plant breeding to produce superior production animals and plants. To optimize fitness benefits in genetic rescue programs and to secure high yielding domestic varieties in animal and plant breeding, knowledge on the genetic relatedness of populations being crossed is imperative. In this study, we conducted replicated crosses between isogenic Drosophila melanogaster lines from the Drosophila Genetic Reference Panel. We grouped lines in two genetic distance groups to study the effect of genetic divergence between populations on the expression of heterosis in two fitness components; starvation resistance and reproductive output. We further investigated the transgenerational effects of outcrossing by investigating the fitness consequences in both the F1- and the F3-generations. High fitness enhancements were observed in hybrid offspring compared to parental lines, especially for reproductive output. However, the level of heterosis declined from the F1- to the F3-generation. Generally, genetic distance did not have strong impact on the level of heterosis detected, although there were exceptions to this pattern. The best predictor of heterosis was performance of parental lines with poorly performing parental lines showing higher hybrid vigour when crossed, i.e. the potential for heterosis was proportional to the level of inbreeding depression. Overall, our results show that outcrossing can have very strong positive fitness consequences for genetically depauperate populations.
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Affiliation(s)
- Charlotte Jensen
- Section of Biology and Environmental Science, Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220, Aalborg E, Denmark
| | - Michael Ørsted
- Section of Biology and Environmental Science, Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220, Aalborg E, Denmark.
| | - Torsten Nygaard Kristensen
- Section of Biology and Environmental Science, Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220, Aalborg E, Denmark.,Section of Genetics, Ecology and Evolution, Institute of Bioscience, Aarhus University, Ny Munkegade 114, 8000, Aarhus C, Denmark
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Henning JH, Townsend MS, Matthews P. Predicting Offspring Performance in Hop (Humulus LupulusL.) Using AFLP Markers. JOURNAL OF THE AMERICAN SOCIETY OF BREWING CHEMISTS 2018. [DOI: 10.1094/asbcj-2010-0706-01] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
| | - M. S. Townsend
- Department of Crop and Soil Sciences, Oregon State University, Corvallis, OR
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Ramya AR, Ahamed M L, Satyavathi CT, Rathore A, Katiyar P, Raj AGB, Kumar S, Gupta R, Mahendrakar MD, Yadav RS, Srivastava RK. Towards Defining Heterotic Gene Pools in Pearl Millet [ Pennisetum glaucum (L.) R. Br.]. FRONTIERS IN PLANT SCIENCE 2017; 8:1934. [PMID: 29552020 PMCID: PMC5841052 DOI: 10.3389/fpls.2017.01934] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2017] [Accepted: 10/26/2017] [Indexed: 05/09/2023]
Abstract
Pearl millet is a climate resilient crop and one of the most widely grown millets worldwide. Heterotic hybrid development is one of the principal breeding objectives in pearl millet. In a maiden attempt to identify heterotic groups for grain yield, a total of 343 hybrid parental [maintainer (B-) and restorer (R-)] lines were genotyped with 88 polymorphic SSR markers. The SSRs generated a total of 532 alleles with a mean value of 6.05 alleles per locus, mean gene diversity of 0.55, and an average PIC of 0.50. Out of 532 alleles, 443 (83.27%) alleles were contributed by B-lines with a mean of 5.03 alleles per locus. R-lines contributed 476 alleles (89.47%) with a mean of 5.41, while 441 (82.89%) alleles were shared commonly between B- and R-lines. The gene diversity was higher among R-lines (0.55) compared to B-lines (0.49). The unweighted neighbor-joining tree based on simple matching dissimilarity matrix obtained from SSR data clearly differentiated B- lines into 10 sub-clusters (B1 through B10), and R- lines into 11 sub-clusters (R1 through R11). A total of 99 hybrids (generated by crossing representative 9 B- and 11 R- lines) along with checks were evaluated in the hybrid trial. The 20 parents were evaluated in the line trial. Both the trials were evaluated in three environments. Based on per se performance, high sca effects and standard heterosis, F1s generated from crosses between representatives of groups B10R5, B3R5, B3R6, B4UD, B5R11, B2R4, and B9R9 had high specific combining ability for grain yield compared to rest of the crosses. These groups may represent putative heterotic gene pools in pearl millet.
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Affiliation(s)
- A. Radhika Ramya
- Department of Genetics and Plant Breeding, Acharya N. G. Ranga Agricultural University, Guntur, India
- International Crops Research Institute for the Semi-Arid Crops, Patancheru, India
| | - Lal Ahamed M
- Department of Genetics and Plant Breeding, Acharya N. G. Ranga Agricultural University, Guntur, India
| | - C. Tara Satyavathi
- All India Coordinated Research Project on Pearl Millet, Indian Council of Agricultural Research, Jodhpur, India
| | - Abhishek Rathore
- International Crops Research Institute for the Semi-Arid Crops, Patancheru, India
| | - Pooja Katiyar
- International Crops Research Institute for the Semi-Arid Crops, Patancheru, India
| | - A. G. Bhasker Raj
- International Crops Research Institute for the Semi-Arid Crops, Patancheru, India
| | - Sushil Kumar
- Centre of Excellence in Biotechnology, Anand Agricultural University, Anand, India
| | - Rajeev Gupta
- International Crops Research Institute for the Semi-Arid Crops, Patancheru, India
| | | | - Rattan S. Yadav
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, United Kingdom
| | - Rakesh K. Srivastava
- International Crops Research Institute for the Semi-Arid Crops, Patancheru, India
- *Correspondence: Rakesh K. Srivastava
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Genomic Prediction of Testcross Performance in Canola (Brassica napus). PLoS One 2016; 11:e0147769. [PMID: 26824924 PMCID: PMC4732662 DOI: 10.1371/journal.pone.0147769] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2015] [Accepted: 01/07/2016] [Indexed: 01/13/2023] Open
Abstract
Genomic selection (GS) is a modern breeding approach where genome-wide single-nucleotide polymorphism (SNP) marker profiles are simultaneously used to estimate performance of untested genotypes. In this study, the potential of genomic selection methods to predict testcross performance for hybrid canola breeding was applied for various agronomic traits based on genome-wide marker profiles. A total of 475 genetically diverse spring-type canola pollinator lines were genotyped at 24,403 single-copy, genome-wide SNP loci. In parallel, the 950 F1 testcross combinations between the pollinators and two representative testers were evaluated for a number of important agronomic traits including seedling emergence, days to flowering, lodging, oil yield and seed yield along with essential seed quality characters including seed oil content and seed glucosinolate content. A ridge-regression best linear unbiased prediction (RR-BLUP) model was applied in combination with 500 cross-validations for each trait to predict testcross performance, both across the whole population as well as within individual subpopulations or clusters, based solely on SNP profiles. Subpopulations were determined using multidimensional scaling and K-means clustering. Genomic prediction accuracy across the whole population was highest for seed oil content (0.81) followed by oil yield (0.75) and lowest for seedling emergence (0.29). For seed yieId, seed glucosinolate, lodging resistance and days to onset of flowering (DTF), prediction accuracies were 0.45, 0.61, 0.39 and 0.56, respectively. Prediction accuracies could be increased for some traits by treating subpopulations separately; a strategy which only led to moderate improvements for some traits with low heritability, like seedling emergence. No useful or consistent increase in accuracy was obtained by inclusion of a population substructure covariate in the model. Testcross performance prediction using genome-wide SNP markers shows considerable potential for pre-selection of promising hybrid combinations prior to resource-intensive field testing over multiple locations and years.
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Chu P, Liu H, Yang Q, Wang Y, Yan G, Guan R. An RNA-seq transcriptome analysis of floral buds of an interspecific Brassica hybrid between B. carinata and B. napus. PLANT REPRODUCTION 2014; 27:225-237. [PMID: 25398253 DOI: 10.1007/s00497-014-0253-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2014] [Accepted: 11/03/2014] [Indexed: 06/04/2023]
Abstract
Interspecific hybridizations promote gene transfer between species and play an important role in plant speciation and crop improvement. However, hybrid sterility that commonly found in the first generation of hybrids hinders the utilization of interspecific hybridization. The combination of divergent parental genomes can create extensive transcriptome variations, and to determine these gene expression alterations and their effects on hybrids, an interspecific Brassica hybrid of B. carinata × B. napus was generated. Scanning electron microscopy analysis indicated that some of the hybrid pollen grains were irregular in shape and exhibited abnormal exine patterns compared with those from the parents. Using the Illumina HiSeq 2000 platform, 39,598, 32,403 and 42,208 genes were identified in flower buds of B. carinata cv. W29, B. napus cv. Zhongshuang 11 and their hybrids, respectively. The differentially expressed genes were significantly enriched in pollen wall assembly, pollen exine formation, pollen development, pollen tube growth, pollination, gene transcription, macromolecule methylation and translation, which might be associated with impaired fertility in the F1 hybrid. These results will shed light on the mechanisms underlying the low fertility of the interspecific hybrids and expand our knowledge of interspecific hybridization.
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Affiliation(s)
- Pu Chu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, Jiangsu, China
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Chołuj D, Wiśniewska A, Szafrański KM, Cebula J, Gozdowski D, Podlaski S. Assessment of the physiological responses to drought in different sugar beet genotypes in connection with their genetic distance. JOURNAL OF PLANT PHYSIOLOGY 2014; 171:1221-30. [PMID: 25014257 DOI: 10.1016/j.jplph.2014.04.016] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2014] [Revised: 04/14/2014] [Accepted: 04/17/2014] [Indexed: 05/20/2023]
Abstract
Drought affects many physiological processes, which influences plant productivity. The aim of this study was to evaluate the degree of genotypic diversity in drought tolerance of sugar beet genotypes (Beta vulgaris L.) in connection with their genetic distance. Three hybrid genotypes produced by crossing double haploid genotype (P-pollinator) with cytoplasmic male-sterile female part (MS), as well as with two parent lines, were examined. Drought conditions were imposed by the cessation of watering at the 3-4 leaf stage for about three months, after which irrigation was resumed. Control plants were optimally irrigated throughout the entire vegetation period. Long-term drought significantly increased the wilting of leaves (Wilt.), specific leaf weight (SLW), the succulence index (Suc.I), leaf senescence and membrane damage (El-l). Simultaneously, the osmotic potential (ψs), leaf area index (LAI), absorption of photosynthetic active radiation (PAR) and the efficiency of the photosynthetic apparatus (Φ PSII) declined under water deficit conditions. The examined genotypes demonstrated a clear diversity in their physiological response to drought. Based on these findings, we suggest that traits that are strongly correlated with root and sugar yield, e.g. Φ PSII, LAI, PAR absorption and ψs, could be used as potential selection criteria in physiological-associated breeding strategies to improve drought tolerance in sugar beet. There was not a significant correlation between the genetic distance separating different sugar beet genotypes and the observed heterotic effect of root or sugar yields, with the exception of heterosis of root yield under optimal conditions, where the correlation was negative.
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Affiliation(s)
- Danuta Chołuj
- Department of Plant Physiology, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland
| | - Anita Wiśniewska
- Department of Plant Physiology, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland.
| | - Kamil M Szafrański
- UPMC Université Paris 6, UMR7208 Laboratoire Biologie des Organismes Aquatiques et Ecosystèmes (UPMC CNRS MNHM IRD UCAEN), Bâtiment A, 7, quai St. Bernard, 75005 Paris, France
| | - Justyna Cebula
- Department of Plant Physiology, Faculty of Biology and Biotechnology, Ruhr-University Bochum, ND Nord 2/33, Universitätsstraße 150, 44801 Bochum, Germany
| | - Dariusz Gozdowski
- Department of Experimental Design and Bioinformatics, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland
| | - Sławomir Podlaski
- Department of Plant Physiology, Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Nowoursynowska 159, 02-776 Warsaw, Poland
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Xing N, Fan C, Zhou Y. Parental selection of hybrid breeding based on maternal and paternal inheritance of traits in rapeseed (Brassica napus L.). PLoS One 2014; 9:e103165. [PMID: 25061995 PMCID: PMC4111582 DOI: 10.1371/journal.pone.0103165] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2014] [Accepted: 06/26/2014] [Indexed: 12/01/2022] Open
Abstract
Parental selection is crucial for hybrid breeding, but the methods available for such a selection are not very effective. In this study, a 6×6 incomplete diallel cross was designed using 12 rapeseed germplasms, and a total of 36 hybrids together with their parental lines were planted in 4 environments. Four yield-related traits and seed oil content (OC) were evaluated. Genetic distance (GD) was estimated with 359 simple sequence repeats (SSRs) markers. Heterosis levels, general combining ability (GCA) and specific combining ability (SCA) were evaluated. GD was found to have a significant correlation with better-parent heterosis (BPH) of thousand seed weight (TSW), SCA of seeds per silique (SS), TSW, and seed yield per plant (SY), while SCA showed a statistically significant correlation with heterosis levels of all traits at 1% significance level. Statistically significant correlations were also observed between GCA of maternal or paternal parents and heterosis levels of different traits except for SS. Interestingly, maternal (TSW, SS, and OC) and paternal (siliques per plant (SP) and SY) inheritance of traits was detected using contribution ratio of maternal and paternal GCA variance as well as correlations between GCA and heterosis levels. Phenotype and heterosis levels of all the traits except TSW of hybrids were significantly correlated with the average performance of parents. The correlations between SS and SP, SP and OC, and SY and OC were statistically significant in hybrids but not in parents. Potential applications of parental selection in hybrid breeding were discussed.
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Affiliation(s)
- Nailin Xing
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
| | - Chuchuan Fan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
| | - Yongming Zhou
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- * E-mail:
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Di G, You W, Yu J, Wang D, Ke C. Genetic changes in muscle protein following hybridization between Haliotis diversicolor
reeve Japan and Taiwan populations revealed using a proteomic approach. Proteomics 2013; 13:845-59. [DOI: 10.1002/pmic.201200351] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2012] [Revised: 10/28/2012] [Accepted: 11/14/2012] [Indexed: 12/23/2022]
Affiliation(s)
- Guilan Di
- State Key Laboratory of Marine Environmental Science; Xiamen University; Xiamen P. R. China
- College of Ocean and Earth Sciences; Xiamen University; Xiamen P. R. China
| | - Weiwei You
- State Key Laboratory of Marine Environmental Science; Xiamen University; Xiamen P. R. China
- College of Ocean and Earth Sciences; Xiamen University; Xiamen P. R. China
| | - Jinjin Yu
- College of Ocean and Earth Sciences; Xiamen University; Xiamen P. R. China
| | - Dexiang Wang
- College of Ocean and Earth Sciences; Xiamen University; Xiamen P. R. China
| | - Caihuan Ke
- State Key Laboratory of Marine Environmental Science; Xiamen University; Xiamen P. R. China
- College of Ocean and Earth Sciences; Xiamen University; Xiamen P. R. China
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Benvenuto C, Tabone E, Vercken E, Sorbier N, Colombel E, Warot S, Fauvergue X, Ris N. Intraspecific variability in the parasitoid wasp Trichogramma chilonis: can we predict the outcome of hybridization? Evol Appl 2012; 5:498-510. [PMID: 22949925 PMCID: PMC3407868 DOI: 10.1111/j.1752-4571.2012.00279.x] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2012] [Accepted: 05/01/2012] [Indexed: 11/27/2022] Open
Abstract
In the framework of biological control, the selection of effective natural enemies determines the final pest control. Thus, the genetic improvement of biocontrol agents could enhance the efficiency of biocontrol programs. Although promising, this approach has rarely been applied in this field. At the intraspecific level, hybridization between divergent populations of biocontrol agents is expected to promote hybrid vigor (heterosis), but it is not clear to what extent. An even more difficult task is the ability to predict the fitness of hybrids from the biological characteristics of their parents. We investigated these general questions by crossing seven populations of the parasitoid wasp Trichogramma chilonis (Hymenoptera: Trichogrammatidae). Our results show different levels of mating compatibilities among populations, including asymmetric or almost complete reproductive isolation. Hybrids' performance (fitness of the F(1) generation) ranges from inbreeding depression to heterosis. It was possible, to some extent, to predict hybrid fitness from pairwise genetic and phenotypic distances among parents, in accordance with the 'dominance' hypothesis. This may provide general guidelines for the genetic improvement of biological control agents.
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Affiliation(s)
- Chiara Benvenuto
- Biology of Introduced Populations, Institute Sophia-AgrobiotechINRA–CNRS–UNS, Sophia-Antipolis, France
| | - Elisabeth Tabone
- Research and Development in Biological Control, Institute Sophia-AgrobiotechINRA–CNRS–UNS, Sophia-Antipolis, France
| | - Elodie Vercken
- Biology of Introduced Populations, Institute Sophia-AgrobiotechINRA–CNRS–UNS, Sophia-Antipolis, France
| | - Nathalie Sorbier
- Research and Development in Biological Control, Institute Sophia-AgrobiotechINRA–CNRS–UNS, Sophia-Antipolis, France
| | - Etty Colombel
- Research and Development in Biological Control, Institute Sophia-AgrobiotechINRA–CNRS–UNS, Sophia-Antipolis, France
| | - Sylvie Warot
- Research and Development in Biological Control, Institute Sophia-AgrobiotechINRA–CNRS–UNS, Sophia-Antipolis, France
| | - Xavier Fauvergue
- Biology of Introduced Populations, Institute Sophia-AgrobiotechINRA–CNRS–UNS, Sophia-Antipolis, France
| | - Nicolas Ris
- Research and Development in Biological Control, Institute Sophia-AgrobiotechINRA–CNRS–UNS, Sophia-Antipolis, France
- †Correspondence Nicolas Ris, Research and Development in Biological Control, Institute Sophia-Agrobiotech, (INRA–CNRS–UNS), Sophia-Antipolis, France. Tel.: +33 4 923 86501; fax: +33 4 923 86401; e-mail:
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Oliveira KM, Pinto LR, Marconi TG, Mollinari M, Ulian EC, Chabregas SM, Falco MC, Burnquist W, Garcia AA, Souza AP. Characterization of new polymorphic functional markers for sugarcane. Genome 2009; 52:191-209. [DOI: 10.1139/g08-105] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Expressed sequence tags (ESTs) offer the opportunity to exploit single, low-copy, conserved sequence motifs for the development of simple sequence repeats (SSRs). The authors have examined the Sugarcane Expressed Sequence Tag database for the presence of SSRs. To test the utility of EST-derived SSR markers, a total of 342 EST–SSRs, which represent a subset of over 2005 SSR-containing sequences that were located in the sugarcane EST database, could be designed from the nonredundant SSR-positive ESTs for possible use as potential genic markers. These EST–SSR markers were used to screen 18 sugarcane ( Saccharum spp.) varieties. A high proportion (65.5%) of the above EST–SSRs, which gave amplified fragments of foreseen size, detected polymorphism. The number of alleles ranged from 2 to 24 with an average of 7.55 alleles per locus, while polymorphism information content values ranged from 0.16 to 0.94, with an average of 0.73. The ability of each set of EST–SSR markers to discriminate between varieties was generally higher than the polymorphism information content analysis. When tested for functionality, 82.1% of these 224 EST–SSRs were found to be functional, showing homology to known genes. As the EST–SSRs are within the expressed portion of the genome, they are likely to be associated to a particular gene of interest, improving their utility for genetic mapping; identification of quantitative trait loci, and comparative genomics studies of sugarcane. The development of new EST–SSR markers will have important implications for the genetic analysis and exploitation of the genetic resources of sugarcane and related species and will provide a more direct estimate of functional diversity.
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Affiliation(s)
- K. M. Oliveira
- Centro de Biologia Molecular e Engenharia Genética (CBMEG) – Universidade Estadual de Campinas (UNICAMP), Departamento de Genética e Evolução, Instituto de Biologia, Cidade Universitária Zeferino Vaz, CP 6010, CEP 13083-875, Campinas-SP, Brasil
- Centro Avançado da Pesquisa Tecnológica do Agronegócio de Cana – IAC/Apta, Anel Viário Contorno Sul, Km 321, CP 206, CEP 14.001-970, Ribeirão Preto-SP, Brasil
- Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz (ESALQ), Universidade de São Paulo (USP), CP 83, CEP 13400-970, Piracicaba-SP, Brasil
- Centro de Tecnologia Canavieira – CTC, Caixa Postal 162, 13400-970, Piracicaba, São Paulo, Brasil
| | - L. R. Pinto
- Centro de Biologia Molecular e Engenharia Genética (CBMEG) – Universidade Estadual de Campinas (UNICAMP), Departamento de Genética e Evolução, Instituto de Biologia, Cidade Universitária Zeferino Vaz, CP 6010, CEP 13083-875, Campinas-SP, Brasil
- Centro Avançado da Pesquisa Tecnológica do Agronegócio de Cana – IAC/Apta, Anel Viário Contorno Sul, Km 321, CP 206, CEP 14.001-970, Ribeirão Preto-SP, Brasil
- Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz (ESALQ), Universidade de São Paulo (USP), CP 83, CEP 13400-970, Piracicaba-SP, Brasil
- Centro de Tecnologia Canavieira – CTC, Caixa Postal 162, 13400-970, Piracicaba, São Paulo, Brasil
| | - T. G. Marconi
- Centro de Biologia Molecular e Engenharia Genética (CBMEG) – Universidade Estadual de Campinas (UNICAMP), Departamento de Genética e Evolução, Instituto de Biologia, Cidade Universitária Zeferino Vaz, CP 6010, CEP 13083-875, Campinas-SP, Brasil
- Centro Avançado da Pesquisa Tecnológica do Agronegócio de Cana – IAC/Apta, Anel Viário Contorno Sul, Km 321, CP 206, CEP 14.001-970, Ribeirão Preto-SP, Brasil
- Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz (ESALQ), Universidade de São Paulo (USP), CP 83, CEP 13400-970, Piracicaba-SP, Brasil
- Centro de Tecnologia Canavieira – CTC, Caixa Postal 162, 13400-970, Piracicaba, São Paulo, Brasil
| | - M. Mollinari
- Centro de Biologia Molecular e Engenharia Genética (CBMEG) – Universidade Estadual de Campinas (UNICAMP), Departamento de Genética e Evolução, Instituto de Biologia, Cidade Universitária Zeferino Vaz, CP 6010, CEP 13083-875, Campinas-SP, Brasil
- Centro Avançado da Pesquisa Tecnológica do Agronegócio de Cana – IAC/Apta, Anel Viário Contorno Sul, Km 321, CP 206, CEP 14.001-970, Ribeirão Preto-SP, Brasil
- Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz (ESALQ), Universidade de São Paulo (USP), CP 83, CEP 13400-970, Piracicaba-SP, Brasil
- Centro de Tecnologia Canavieira – CTC, Caixa Postal 162, 13400-970, Piracicaba, São Paulo, Brasil
| | - E. C. Ulian
- Centro de Biologia Molecular e Engenharia Genética (CBMEG) – Universidade Estadual de Campinas (UNICAMP), Departamento de Genética e Evolução, Instituto de Biologia, Cidade Universitária Zeferino Vaz, CP 6010, CEP 13083-875, Campinas-SP, Brasil
- Centro Avançado da Pesquisa Tecnológica do Agronegócio de Cana – IAC/Apta, Anel Viário Contorno Sul, Km 321, CP 206, CEP 14.001-970, Ribeirão Preto-SP, Brasil
- Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz (ESALQ), Universidade de São Paulo (USP), CP 83, CEP 13400-970, Piracicaba-SP, Brasil
- Centro de Tecnologia Canavieira – CTC, Caixa Postal 162, 13400-970, Piracicaba, São Paulo, Brasil
| | - S. M. Chabregas
- Centro de Biologia Molecular e Engenharia Genética (CBMEG) – Universidade Estadual de Campinas (UNICAMP), Departamento de Genética e Evolução, Instituto de Biologia, Cidade Universitária Zeferino Vaz, CP 6010, CEP 13083-875, Campinas-SP, Brasil
- Centro Avançado da Pesquisa Tecnológica do Agronegócio de Cana – IAC/Apta, Anel Viário Contorno Sul, Km 321, CP 206, CEP 14.001-970, Ribeirão Preto-SP, Brasil
- Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz (ESALQ), Universidade de São Paulo (USP), CP 83, CEP 13400-970, Piracicaba-SP, Brasil
- Centro de Tecnologia Canavieira – CTC, Caixa Postal 162, 13400-970, Piracicaba, São Paulo, Brasil
| | - M. C. Falco
- Centro de Biologia Molecular e Engenharia Genética (CBMEG) – Universidade Estadual de Campinas (UNICAMP), Departamento de Genética e Evolução, Instituto de Biologia, Cidade Universitária Zeferino Vaz, CP 6010, CEP 13083-875, Campinas-SP, Brasil
- Centro Avançado da Pesquisa Tecnológica do Agronegócio de Cana – IAC/Apta, Anel Viário Contorno Sul, Km 321, CP 206, CEP 14.001-970, Ribeirão Preto-SP, Brasil
- Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz (ESALQ), Universidade de São Paulo (USP), CP 83, CEP 13400-970, Piracicaba-SP, Brasil
- Centro de Tecnologia Canavieira – CTC, Caixa Postal 162, 13400-970, Piracicaba, São Paulo, Brasil
| | - W. Burnquist
- Centro de Biologia Molecular e Engenharia Genética (CBMEG) – Universidade Estadual de Campinas (UNICAMP), Departamento de Genética e Evolução, Instituto de Biologia, Cidade Universitária Zeferino Vaz, CP 6010, CEP 13083-875, Campinas-SP, Brasil
- Centro Avançado da Pesquisa Tecnológica do Agronegócio de Cana – IAC/Apta, Anel Viário Contorno Sul, Km 321, CP 206, CEP 14.001-970, Ribeirão Preto-SP, Brasil
- Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz (ESALQ), Universidade de São Paulo (USP), CP 83, CEP 13400-970, Piracicaba-SP, Brasil
- Centro de Tecnologia Canavieira – CTC, Caixa Postal 162, 13400-970, Piracicaba, São Paulo, Brasil
| | - A. A.F. Garcia
- Centro de Biologia Molecular e Engenharia Genética (CBMEG) – Universidade Estadual de Campinas (UNICAMP), Departamento de Genética e Evolução, Instituto de Biologia, Cidade Universitária Zeferino Vaz, CP 6010, CEP 13083-875, Campinas-SP, Brasil
- Centro Avançado da Pesquisa Tecnológica do Agronegócio de Cana – IAC/Apta, Anel Viário Contorno Sul, Km 321, CP 206, CEP 14.001-970, Ribeirão Preto-SP, Brasil
- Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz (ESALQ), Universidade de São Paulo (USP), CP 83, CEP 13400-970, Piracicaba-SP, Brasil
- Centro de Tecnologia Canavieira – CTC, Caixa Postal 162, 13400-970, Piracicaba, São Paulo, Brasil
| | - A. P. Souza
- Centro de Biologia Molecular e Engenharia Genética (CBMEG) – Universidade Estadual de Campinas (UNICAMP), Departamento de Genética e Evolução, Instituto de Biologia, Cidade Universitária Zeferino Vaz, CP 6010, CEP 13083-875, Campinas-SP, Brasil
- Centro Avançado da Pesquisa Tecnológica do Agronegócio de Cana – IAC/Apta, Anel Viário Contorno Sul, Km 321, CP 206, CEP 14.001-970, Ribeirão Preto-SP, Brasil
- Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz (ESALQ), Universidade de São Paulo (USP), CP 83, CEP 13400-970, Piracicaba-SP, Brasil
- Centro de Tecnologia Canavieira – CTC, Caixa Postal 162, 13400-970, Piracicaba, São Paulo, Brasil
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Hale AL, Farnham MW, Nzaramba MN, Kimbeng CA. Heterosis for horticultural traits in broccoli. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2007; 115:351-60. [PMID: 17554519 DOI: 10.1007/s00122-007-0569-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2006] [Accepted: 04/23/2007] [Indexed: 05/03/2023]
Abstract
Over the last three decades, broccoli (Brassica oleracea L., Italica Group) hybrids made by crossing two inbred lines replaced open-pollinated populations to become the predominant type of cultivar. The change to hybrids evolved with little or no understanding of heterosis or hybrid vigor in this crop. Therefore, the purpose of the present study was to determine levels of heterosis expressed by a set of hybrids derived by crossing relatively elite, modern inbreds (n = 9). An additional objective was to determine if PCR-based marker derived genetic similarities among the parents can be useful to predict heterosis in this crop. Thirty-six hybrids derived from a diallel mating design involving nine parents were evaluated for five horticultural characters including the head characteristics of head weight, head stem diameter, and maturity (e.g., days from transplant to harvest), and the plant vigor characteristics of plant height, and plant width in four environments. A total of 409 polymorphic markers were generated by 24 AFLP, 23 SRAP and 17 SSR primer combinations. Euclidean distances between parents were determined based on phenotypic traits. About half of the hybrids exhibited highparent heterosis for head weight (1-30 g) and stem diameter (0.2-3.5 cm) when averaged across environments. Almost all hybrids showed highparent heterosis for plant height (1-10 cm) and width (2-13 cm). Unlike other traits, there was negative heterosis for maturity, indicating that heterosis for this character in hybrids is expressed as earliness. Genetic similarity estimates among the nine parental lines ranged from 0.43 to 0.71 and were significantly and negatively correlated with highparent heterosis for all traits except for stem diameter and days from transplant to harvest. Euclidean distances were not correlated with heterosis. With modern broccoli inbreds, less heterosis was observed for head characteristics than for traits that measured plant vigor. In addition, genetic similarity based on molecular markers was more highly correlated with plant vigor characteristics than head traits. Unlike with molecular marker-based estimates of genetic similarity, euclidean distance determined using phenotypic trait data was not predictive of heterosis. In conclusion, this study has documented heterosis in Brassica oleracea L., and the ability to predict heterosis in this crop using molecular marker-based estimates of genetic similarity among parents used in producing the hybrid.
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Affiliation(s)
- Anna L Hale
- U.S. Vegetable Laboratory, U.S. Department of Agriculture/Agricultural Research Service, 2700 Savannah Hwy, Charleston, SC 29414, USA.
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Qian W, Sass O, Meng J, Li M, Frauen M, Jung C. Heterotic patterns in rapeseed (Brassica napus L.): I. Crosses between spring and Chinese semi-winter lines. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2007; 115:27-34. [PMID: 17453172 DOI: 10.1007/s00122-007-0537-x] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2006] [Accepted: 03/10/2007] [Indexed: 05/05/2023]
Abstract
Chinese semi-winter rapeseed is genetically diverse from Canadian and European spring rapeseed. This study was conducted to evaluate the potential of semi-winter rapeseed for spring rapeseed hybrid breeding, to assess the genetic effects involved, and to estimate the correlation of parental genetic distance (GD) with hybrid performance, heterosis, general combining ability (GCA) and specific combining ability (SCA) in crosses between spring and semi-winter rapeseed lines. Four spring male sterile lines from Germany and Canada as testers were crossed with 13 Chinese semi-winter rapeseed lines to develop 52 hybrids, which were evaluated together with their parents and commercial hybrids for seed yield and oil content in three sets of field trials with 8 environments in Canada and Europe. The Chinese parental lines were not adapted to local environmental conditions as demonstrated by poor seed yields per se. However, the hybrids between the Chinese parents and the adapted spring rapeseed lines exhibited high heterosis for seed yield. The average mid-parent heterosis was 15% and ca. 50% of the hybrids were superior to the respective hybrid control across three sets of field trials. Additive gene effects mainly contributed to hybrid performance since the mean squares of GCA were higher as compared to SCA. The correlation between parental GD and hybrid performance and heterosis was found to be low whereas the correlation between GCA((f + m)) and hybrid performance was high and significant in each set of field trials, with an average of r = 0.87 for seed yield and r = 0.89 for oil content, indicating that hybrid performance can be predicted by GCA((f + m)). These results demonstrate that Chinese semi-winter rapeseed germplasm has a great potential to increase seed yield in spring rapeseed hybrid breeding programs in Canada and Europe.
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Affiliation(s)
- W Qian
- Plant Breeding Institute, Christian-Albrechts-University of Kiel, Kiel 24118, Germany
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