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Koottatep T, Pussayanavin T, Polprasert C. Performance evaluation of modified Living Wall garden for treating septic tank effluent. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:50388-50397. [PMID: 39095631 DOI: 10.1007/s11356-024-34547-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Accepted: 07/24/2024] [Indexed: 08/04/2024]
Abstract
The Living Wall (LW) garden system has been employed as a post-treatment system to improve the effluent quality of septic tanks. This improvement primarily involves reducing nutrient levels, as well as facilitating the removal of organic matter and solids in accordance with effluent discharge guidelines. The objective of this study was to investigate the treatment performance of the LW system connected to a septic tank, along with an examination of the microbial communities within the LW units. A laboratory-scale LW system, comprising LW1, LW2, and LW3 units, was employed. The system was fed with effluent obtained from septic tanks and varied by theoretical hydraulic retention time (HRT) of 6, 12, and 24 h. The TCOD, SCOD, TSS, TVS, TKN, and TP removal efficiencies of the LWs were achieved at 62 ± 24, 42 ± 19, 72 ± 21, 66 ± 15, 80 ± 15, and 58 ± 21%, respectively. To classify microbial communities in the soil and gravels collected from each LW unit, the Illumina MiSeq System Sequencer was employed. Nitrospirota was consistently found in all LW units, aiding in the conversion of nitrogen. Fusobacteriota were detected in specific layers of the LW units, indicating varying oxygen levels in the LW system.
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Affiliation(s)
- Thammarat Koottatep
- Environmental Engineering and Management, Asian Institute of Technology, Khlong Luang, Pathum Thani, Thailand
| | | | - Chongrak Polprasert
- Department of Civil Engineering, Faculty of Engineering, Thammasat University, Khlong Luang, Pathum Thani, Thailand
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2
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Visser AN, Martin JD, Osenbrück K, Rügner H, Grathwohl P, Kappler A. In situ incubation of iron(II)-bearing minerals and Fe(0) reveals insights into metabolic flexibility of chemolithotrophic bacteria in a nitrate polluted karst aquifer. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 926:172062. [PMID: 38554974 DOI: 10.1016/j.scitotenv.2024.172062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 03/25/2024] [Accepted: 03/26/2024] [Indexed: 04/02/2024]
Abstract
Groundwater nitrate pollution is a major reason for deteriorating water quality and threatens human and animal health. Yet, mitigating groundwater contamination naturally is often complicated since most aquifers are limited in bioavailable carbon. Since metabolically flexible microbes might have advantages for survival, this study presents a detailed description and first results on our modification of the BacTrap© method, aiming to determine the prevailing microbial community's potential to utilize chemolithotrophic pathways. Our microbial trapping devices (MTDs) were amended with four different iron sources and incubated in seven groundwater monitoring wells for ∼3 months to promote growth of nitrate-reducing Fe(II)-oxidizing bacteria (NRFeOxB) in a nitrate-contaminated karst aquifer. Phylogenetic analysis based on 16S rRNA gene sequences implies that the identity of the iron source influenced the microbial community's composition. In addition, high throughput amplicon sequencing revealed increased relative 16S rRNA gene abundances of OTUs affiliated to genera such as Thiobacillus, Rhodobacter, Pseudomonas, Albidiferax, and Sideroxydans. MTD-derived enrichments set up with Fe(II)/nitrate/acetate to isolate potential NRFeOxB, were dominated by e.g., Acidovorax spp., Paracoccus spp. and Propionivibrio spp. MTDs are a cost-effective approach for investigating microorganisms in groundwater and our data not only solidifies the MTD's capacity to provide insights into the metabolic flexibility of the aquifer's microbial community, but also substantiates its metabolic potential for anaerobic Fe(II) oxidation.
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Affiliation(s)
- Anna-Neva Visser
- GeoZentrum Nordbayern, Friedrich-Alexander-University Erlangen-Nürnberg (FAU), Germany; Department of Geosciences, University of Tübingen, Germany.
| | - Joseph D Martin
- Department of Biology, Terrestrial Ecology, University of Copenhagen, Denmark
| | - Karsten Osenbrück
- Department of Geosciences, University of Tübingen, Germany; Federal Institute for Geosciences and Natural Resources (BGR), Hannover, Germany
| | - Hermann Rügner
- Department of Geosciences, University of Tübingen, Germany
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Zhang W, Mo Q, Huang Z, Sabar MA, Medunić G, Ivošević T, He H, Urynowicz M, Liu FJ, Guo H, Haider R, Ali MI, Jamal A. Contaminants from a former Croatian coal sludge dictate the structure of microbiota in the estuarine (Raša Bay) sediment and soil. Front Microbiol 2023; 14:1126612. [PMID: 36846805 PMCID: PMC9947854 DOI: 10.3389/fmicb.2023.1126612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2022] [Accepted: 01/23/2023] [Indexed: 02/11/2023] Open
Abstract
Introduction Croatian superhigh-organic-sulfur Raša coal had been mined for nearly 400 years. The release of hazardous trace elements (HTEs) and toxic organic pollutants (TOPs) into the local environment by coal mining, preparation, and combustion activities has resulted in pollution. Methods In this study, the diversity and composition of microbial communities in estuarine sediment and soil samples as well as community function responses to the pollutants were investigated. Results The results showed that PAH degradation does occur following 60 years of natural attenuation, the location is still heavily polluted by polycyclic aromatic hydrocarbons (PAHs) and HTEs. Microbial analyses have shown that high concentrations of PAHs have reduced the diversity and abundance of microbial communities. The pollution exerted an adverse, long-term impact on the microbial community structure and function in the brackish aquatic ecosystem. Microorganisms associated with the degradation of PAHs and sulfur-containing compounds have been enriched although the diversity and abundance of the microbial community have reduced. Fungi which are believed to be the main PAH degrader may play an important role initially, but the activity remains lower thereafter. It is the high concentrations of coal-derived PAHs, rather than HTEs, that have reduced the diversity and abundance of microbial communities and shaped the structure of the local microbiota. Discussion This study could provide a basis for the monitoring and restoration of ecosystems impacted by coal mining activities considering the expected decommission of a large number of coal plants on a global scale in the coming years due to growing global climate change concerns.
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Affiliation(s)
- Weiting Zhang
- Key Laboratory of Coal Processing and Efficient Utilization of Ministry of Education, School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou, China
| | - Qianyun Mo
- Key Laboratory of Coal Processing and Efficient Utilization of Ministry of Education, School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou, China
| | - Zaixing Huang
- Key Laboratory of Coal Processing and Efficient Utilization of Ministry of Education, School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou, China
- Department of Civil and Architectural Engineering, University of Wyoming, Laramie, WY, United States
| | - Muhammad Adnan Sabar
- Environmental Risk Control Engineering Laboratory, Division of Environmental Design, Kanazawa University, Kanazawa, Japan
| | - Gordana Medunić
- Department of Geology, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | - Tatjana Ivošević
- Faculty of Maritime Studies, University of Rijeka, Rijeka, Croatia
| | - Huan He
- Key Laboratory of Coal Processing and Efficient Utilization of Ministry of Education, School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou, China
| | - Michael Urynowicz
- Department of Civil and Architectural Engineering, University of Wyoming, Laramie, WY, United States
| | - Fang-Jing Liu
- Key Laboratory of Coal Processing and Efficient Utilization of Ministry of Education, School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou, China
| | - Hongguang Guo
- College of Safety and Emergency Management and Engineering, Taiyuan University of Technology, Taiyuan, China
| | - Rizwan Haider
- Institute of Energy & Environmental Engineering, University of the Punjab, Lahore, Pakistan
| | | | - Asif Jamal
- Department of Microbiology, Quaid-i-Azam University, Islamabad, Pakistan
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Nguyen PM, Arslan M, Kappelmeyer U, Mäusezahl I, Wiessner A, Müller JA. Spatial characterization of microbial sulfur cycling in horizontal-flow constructed wetland models. CHEMOSPHERE 2022; 309:136605. [PMID: 36179921 DOI: 10.1016/j.chemosphere.2022.136605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Revised: 09/20/2022] [Accepted: 09/23/2022] [Indexed: 06/16/2023]
Abstract
Constructed wetlands (CWs) are a cost-effective technology for wastewater treatment in which plant-microorganism relationships play a key role in transforming pollutants. However, there is little knowledge about the spatial organization of microbial metabolic processes in CWs. Here we show the structuring of microbial transformation of inorganic sulfur compounds (ISCs) in two horizontal subsurface-flow CW models fed with sulfate-rich artificial wastewater. One model was fully planted with Juncus effusus, while the other was planted only in the middle to investigate further the influence of the plant on ISC transformations. Chemical analyses revealed that sulfate reduction and re-oxidation of sulfide/sulfur occurred simultaneously along the flow paths, with net reduction at the beginning of the CWs, where organic carbon from the influent was still present, and predominant re-oxidation in the downstream sections. Porewater ISC concentrations hardly differed between the two CWs. However, analysis of the bacterial communities showed that sulfur cycling in the fully planted CW was much higher. Total bacterial abundances were about 50 times and 3-4 orders of magnitude higher in the rhizoplane than in porewater and on gravel, respectively, as quantified by qPCR determination of the 16S rRNA gene. Sequencing of 16S rRNA gene amplicons revealed that bacterial communities on the roots and in the porewater differed substantially, apparently a consequence of the fluxes of oxygen and exudates from the roots. Furthermore, we observed partitioning of ISC transforming bacteria into different niches of the CWs. The results of the chemical and microbial analyses collectively support that extensive sulfur cycling occurred in the rhizospheres of the CW models. The study is relevant to the treatment of sulfur-containing wastewater and the elucidation of microbial communities involved in biogeochemical activities to improve water quality.
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Affiliation(s)
- Phuong Minh Nguyen
- Department of Environmental Biotechnology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany; Department of Environmental Technology, Faculty of Environmental Sciences, University of Science, Vietnam National University, Hanoi, Viet Nam
| | - Muhammad Arslan
- Department of Environmental Biotechnology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany; Department of Civil and Environmental Engineering, University of Alberta, Edmonton, Canada
| | - Uwe Kappelmeyer
- Department of Environmental Biotechnology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Ines Mäusezahl
- Department of Environmental Biotechnology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Arndt Wiessner
- Department of Environmental Biotechnology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Jochen A Müller
- Department of Environmental Biotechnology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany; Institute for Biological Interfaces (IBG 5), Karlsruhe Institute of Technology, Eggenstein-Leopoldshafen, Germany.
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Akimbekov NS, Digel I, Tastambek KT, Marat AK, Turaliyeva MA, Kaiyrmanova GK. Biotechnology of Microorganisms from Coal Environments: From Environmental Remediation to Energy Production. BIOLOGY 2022; 11:biology11091306. [PMID: 36138784 PMCID: PMC9495453 DOI: 10.3390/biology11091306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Revised: 08/31/2022] [Accepted: 08/31/2022] [Indexed: 11/22/2022]
Abstract
Simple Summary Despite the wide perception that coal environments are extreme habitats, they harbor resident microbial communities. Coal-associated habitats, such as coal mine areas/drainages, spoil heaps, and coalbeds, are defined as complex ecosystems with indigenous microbial groups and native microecological networks. Resident microorganisms possess rich functional potentials and profoundly shape a range of biotechnological processes in the coal industry, from production to remediation. Abstract It was generally believed that coal sources are not favorable as live-in habitats for microorganisms due to their recalcitrant chemical nature and negligible decomposition. However, accumulating evidence has revealed the presence of diverse microbial groups in coal environments and their significant metabolic role in coal biogeochemical dynamics and ecosystem functioning. The high oxygen content, organic fractions, and lignin-like structures of lower-rank coals may provide effective means for microbial attack, still representing a greatly unexplored frontier in microbiology. Coal degradation/conversion technology by native bacterial and fungal species has great potential in agricultural development, chemical industry production, and environmental rehabilitation. Furthermore, native microalgal species can offer a sustainable energy source and an excellent bioremediation strategy applicable to coal spill/seam waters. Additionally, the measures of the fate of the microbial community would serve as an indicator of restoration progress on post-coal-mining sites. This review puts forward a comprehensive vision of coal biodegradation and bioprocessing by microorganisms native to coal environments for determining their biotechnological potential and possible applications.
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Affiliation(s)
- Nuraly S. Akimbekov
- Department of Biotechnology, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
- Correspondence:
| | - Ilya Digel
- Institute for Bioengineering, FH Aachen University of Applied Sciences, 52428 Jülich, Germany
| | - Kuanysh T. Tastambek
- Department of Fundamental Medicine, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
- Department of Applied Biology, M. Kh. Dulaty Taraz Regional University, Taraz 080012, Kazakhstan
- Ecology Research Institute, Khoja Akhmet Yassawi International Kazakh-Turkish University, Turkistan 161200, Kazakhstan
| | - Adel K. Marat
- Department of Biotechnology, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
| | - Moldir A. Turaliyeva
- Department of Biotechnology, M. Auezov South Kazakhstan University, Shymkent 160012, Kazakhstan
| | - Gulzhan K. Kaiyrmanova
- Department of Biotechnology, Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
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Li L, Feng J, Zhang L, Yin H, Fan C, Wang Z, Zhao M, Ge C, Song H. Enhanced nitrogen and phosphorus removal by natural pyrite-based constructed wetland with intermittent aeration. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:69012-69028. [PMID: 34286432 DOI: 10.1007/s11356-021-15461-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Accepted: 07/12/2021] [Indexed: 06/13/2023]
Abstract
Four subsurface flow constructed wetlands (SFCWs) filled with different substrates including ceramsite, ceramsite+pyrite, ceramsite+ferrous sulfide, and ceramsite+pyrite+ferrous sulfide (labeled as SFCW-S1, SFCW-S2, SFCW-S3, and SFCW-S4) were constructed, and the removal of nitrogen and phosphorus by these SFCWs coupled with intermittent aeration in the front section was discussed. The key findings from different substrate analyses, including nitrification and denitrification rate, enzyme activity, microbial community structure, and the X-ray diffraction, revealed the nitrogen and phosphorus removal mechanism. The results showed that the nitrogen and phosphorus removal efficiency for SFCW-S1 always remained the lowest, and the phosphorus removal efficiency for SFCW-S4 was recorded as the highest one. However, after controlling the dissolved oxygen by intermittent aeration in the front section of SFCWs, the nitrogen and phosphorus removal efficiencies of SFCWs-S2 and S4 became higher than those of SFCW-S1, and SFCW-S3. It was noticed that the pollutants were removed mainly in the front section of the SFCWs. Both precipitation and adsorption on the substrate were the main mechanisms for phosphorus removal. A minute difference of nitrification rate and ammonia monooxygenase activity was observed in the SFCWs' aeration zone. The denitrification rates, nitrate reductase, nitrite reductase, and electron transport system activity for SFCW-S2 and SFCW-S4 were higher than those detected for SFCW-S1 and SFCW-S3 in the non-aerated zone. Proteobacteria was the largest phyla found in the SFCWs. Moreover, Thiobacillus occupied a large proportion found in SFCW-S2, and SFCW-S4, and it played a crucial role in pyrite-driven autotrophic denitrification.
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Affiliation(s)
- Liya Li
- Anhui Provincial Engineering Laboratory for Rural Water Environment and Resources, School of Civil and Hydraulic Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Jingwei Feng
- Anhui Provincial Engineering Laboratory for Rural Water Environment and Resources, School of Civil and Hydraulic Engineering, Hefei University of Technology, Hefei, 230009, China.
- State Key Laboratory of Pollution Control & Resources Reuse, School of the Environment, Nanjing University, Nanjing, 210046, China.
- Anhui Province Key Laboratory of Industrial Wastewater and Environmental Treatment, Hefei, 230024, China.
| | - Liu Zhang
- Anhui Academy of Environmental Science and Research, Hefei, 230001, China.
| | - Hao Yin
- CAS Key Laboratory of Crust-Mantle Materials and the Environments, School of Earth and Space Sciences, University of Science and Technology of China, Hefei, 230026, China
- Mass Spectrometry Lab, Hefei National Laboratory for Physical Sciences at Microscale, University of Science and Technology of China, Hefei, 230026, China
| | - Chunli Fan
- Anhui Provincial Engineering Laboratory for Rural Water Environment and Resources, School of Civil and Hydraulic Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Zechun Wang
- Anhui Provincial Engineering Laboratory for Rural Water Environment and Resources, School of Civil and Hydraulic Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Menglei Zhao
- Anhui Provincial Engineering Laboratory for Rural Water Environment and Resources, School of Civil and Hydraulic Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Chengchang Ge
- Anhui Provincial Engineering Laboratory for Rural Water Environment and Resources, School of Civil and Hydraulic Engineering, Hefei University of Technology, Hefei, 230009, China
| | - Hao Song
- Anhui Provincial Engineering Laboratory for Rural Water Environment and Resources, School of Civil and Hydraulic Engineering, Hefei University of Technology, Hefei, 230009, China
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Ly T, Wright JR, Weit N, McLimans CJ, Ulrich N, Tokarev V, Valkanas MM, Trun N, Rummel S, Grant CJ, Lamendella R. Microbial Communities Associated With Passive Acidic Abandoned Coal Mine Remediation. Front Microbiol 2019; 10:1955. [PMID: 31507566 PMCID: PMC6716070 DOI: 10.3389/fmicb.2019.01955] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Accepted: 08/08/2019] [Indexed: 02/01/2023] Open
Abstract
Acid mine drainage (AMD) is an environmental issue that can be characterized by either acidic or circumneutral pH and high dissolved metal content in contaminated waters. It is estimated to affect roughly 3000 miles of waterways within the state of Pennsylvania, with half being acidic and half being circumneutral. To negate the harmful effects of AMD, ∼300 passive remediation systems have been constructed within the state of Pennsylvania. In this study, we evaluated the microbial community structure and functional capability associated with Middle Branch passive remediation system in central PA. Sediment and water samples were collected from each area within the passive remediation system and its receiving stream. Environmental parameters associated with the remediation system were found to explain a significant amount of variation in microbial community structure. This study revealed shifts in microbial community structure from acidophilic bacteria in raw AMD discharge to a more metabolically diverse set of taxa (i.e., Acidimicrobiales, Rhizobiales, Chthoniobacteraceae) toward the end of the system. Vertical flow ponds and the aerobic wetland showed strong metabolic capability for sulfur redox environments. These findings are integral to the understanding of designing effective passive remediation systems because it provides insight as to how certain bacteria [sulfate reducing bacteria (SRBs) and sulfur oxidizing bacteria (SOBs)] are potentially contributing to a microbially mediated AMD remediation process. This study further supports previous investigations that demonstrated the effectiveness of SRBs in the process of removing sulfate and heavy metals from contaminated water.
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Affiliation(s)
- Truc Ly
- Department of Biology, Juniata College, Huntingdon, PA, United States
| | | | - Nicholas Weit
- Department of Biology, Juniata College, Huntingdon, PA, United States
| | | | - Nikea Ulrich
- Department of Biology, Juniata College, Huntingdon, PA, United States
| | | | - Michelle M Valkanas
- Department of Biological Sciences, Duquesne University, Pittsburgh, PA, United States
| | - Nancy Trun
- Department of Biological Sciences, Duquesne University, Pittsburgh, PA, United States
| | | | | | - Regina Lamendella
- Department of Biology, Juniata College, Huntingdon, PA, United States.,Wright Labs LLC., Huntingdon, PA, United States
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An integrated microbiological and electrochemical approach to determine distributions of Fe metabolism in acid mine drainage-induced "iron mound" sediments. PLoS One 2019; 14:e0213807. [PMID: 30913215 PMCID: PMC6435174 DOI: 10.1371/journal.pone.0213807] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2018] [Accepted: 02/28/2019] [Indexed: 11/21/2022] Open
Abstract
Fe(III)-rich deposits referred to as “iron mounds” develop when Fe(II)-rich acid mine drainage (AMD) emerges at the terrestrial surface, and aeration of the fluids induces oxidation of Fe(II), with subsequent precipitation of Fe(III) phases. As Fe(III) phases accumulate in these systems, O2 gradients may develop in the sediments and influence the distributions and extents of aerobic and anaerobic microbiological Fe metabolism, and in turn the solubility of Fe. To determine how intrusion of O2 into iron mound sediments influences microbial community composition and Fe metabolism, we incubated samples of these sediments in a column format. O2 was only supplied through the top of the columns, and microbiological, geochemical, and electrochemical changes at discrete depths were determined with time. Despite the development of dramatic gradients in dissolved Fe(II) concentrations, indicating Fe(II) oxidation in shallower portions and Fe(III) reduction in the deeper portions, microbial communities varied little with depth, suggesting the metabolic versatility of organisms in the sediments with respect to Fe metabolism. Additionally, the availability of O2 in shallow portions of the sediments influenced Fe metabolism in deeper, O2-free sediments. Total potential (EH + self-potential) measurements at discrete depths in the columns indicated that Fe transformations and electron transfer processes were occurring through the sediments and could explain the impact of O2 on Fe metabolism past where it penetrates into the sediments. This work shows that O2 availability (or lack of it) minimally influences microbial communities, but influences microbial activities beyond its penetration depth in AMD-derived Fe(III) rich sediments. Our results indicate that O2 can modulate Fe redox state and solubility in larger volumes of iron mound sediments than only those directly exposed to O2.
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Andleeb KB, Hashmi I. Impact of meteorological conditions on the water quality of wastewater treatment systems: a comparative study of phytoremediation and membrane bioreactor system. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2018; 2017:718-728. [PMID: 30016289 DOI: 10.2166/wst.2018.247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Two demonstration wastewater treatment systems, i.e. a phytoremediation system and a membrane bioreactor (MBR) system, were studied for a six-month period from August 2016 to January 2017. The phytoremediation system consists of wetland cells implanted with diverse phytoremediation macrophyte species at NUST H-12 sector Islamabad, Pakistan, while the MBR system comprises primary clarifiers, membrane tanks and bio tanks that treat domestic wastewater through hybridization of biological and biomechanical techniques. The phytoremediation system receives domestic wastewater at the rate of 283 m3/d, and greater hydraulic efficiencies were achieved because of compartmentalization and higher aspect ratios, whereas the MBR system receives 50 m3/d. The present study was conducted to analyze and compare the correlation between water quality parameters of wastewater treatment systems and meteorological conditions. Statistically significant correlation was exhibited between eight water quality parameters (pH, EC, turbidity, dissolved oxygen, total suspended solids (TSS), chemical oxygen demand (COD), biological oxygen demand (BOD) and total coliforms (TC)) and meteorological factors (ambient temperature and relative humidity). Predominant species isolated and identified through polymerase chain reaction and 16S rRNA sequencing from wastewater of the phytoremediation system and sludge of the MBR system belong to the phylum Proteobacteria with relatively higher abundance of Enterobacter, Shigella, Escherichia and Salmonella genera.
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Affiliation(s)
- Khush Bakht Andleeb
- Institute of Environmental Sciences and Engineering, School of Civil and Environmental Engineering, National University of Sciences and Technology, Islamabad, Pakistan E-mail:
| | - Imran Hashmi
- Institute of Environmental Sciences and Engineering, School of Civil and Environmental Engineering, National University of Sciences and Technology, Islamabad, Pakistan E-mail:
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Liu J, Chen X, Shu HY, Lin XR, Zhou QX, Bramryd T, Shu WS, Huang LN. Microbial community structure and function in sediments from e-waste contaminated rivers at Guiyu area of China. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2018; 235:171-179. [PMID: 29288930 DOI: 10.1016/j.envpol.2017.12.008] [Citation(s) in RCA: 82] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2017] [Revised: 12/01/2017] [Accepted: 12/03/2017] [Indexed: 06/07/2023]
Abstract
The release of toxic organic pollutants and heavy metals by primitive electronic waste (e-waste) processing to waterways has raised significant concerns, but little is known about their potential ecological effects on aquatic biota especially microorganisms. We characterized the microbial community composition and diversity in sediments sampled along two rivers consistently polluted by e-waste, and explored how community functions may respond to the complex combined pollution. High-throughput 16S rRNA gene sequencing showed that Proteobacteria (particularly Deltaproteobacteria) dominated the sediment microbial assemblages followed by Bacteroidetes, Acidobacteria, Chloroflexi and Firmicutes. PICRUSt metagenome inference provided an initial insight into the metabolic potentials of these e-waste affected communities, speculating that organic pollutants degradation in the sediment might be mainly performed by some of the dominant genera (such as Sulfuricurvum, Thiobacillus and Burkholderia) detected in situ. Statistical analyses revealed that toxic organic compounds contributed more to the observed variations in sediment microbial community structure and predicted functions (24.68% and 8.89%, respectively) than heavy metals (12.18% and 4.68%), and Benzo(a)pyrene, bioavailable lead and electrical conductivity were the key contributors. These results have shed light on the microbial assemblages in e-waste contaminated river sediments, indicating a potential influence of e-waste pollution on the microbial community structure and function in aquatic ecosystems.
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Affiliation(s)
- Jun Liu
- Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, College of Ecology and Evolution, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Xi Chen
- Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, College of Ecology and Evolution, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Hao-Yue Shu
- Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, College of Ecology and Evolution, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Xue-Rui Lin
- South China Institute of Environmental Sciences, Ministry of Environmental Protection, Guangzhou 510655, PR China
| | - Qi-Xing Zhou
- Key Laboratory of Pollution Processes and Environmental Criteria (Ministry of Education), Tianjin Key Laboratory of Environmental Remediation and Pollution Control, College of Environmental Science and Engineering, Nankai University, Tianjin 300071, PR China
| | - Torleif Bramryd
- Department of Environmental Strategy, University of Lund, Campus Helsingborg, PO Box 882, SE-251 08 Helsingborg, Sweden
| | - Wen-Sheng Shu
- Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, College of Ecology and Evolution, Sun Yat-sen University, Guangzhou 510275, PR China
| | - Li-Nan Huang
- Key Laboratory of Biodiversity Dynamics and Conservation of Guangdong Higher Education Institutes, College of Ecology and Evolution, Sun Yat-sen University, Guangzhou 510275, PR China.
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Sustainability of Constructed Wetland under the Impact of Aquatic Organisms Overloading. SUSTAINABILITY 2017. [DOI: 10.3390/su9050863] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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12
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Chen Y, Wen Y, Zhou Q, Huang J, Vymazal J, Kuschk P. Sulfate removal and sulfur transformation in constructed wetlands: The roles of filling material and plant biomass. WATER RESEARCH 2016; 102:572-581. [PMID: 27423407 DOI: 10.1016/j.watres.2016.07.001] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2016] [Revised: 07/01/2016] [Accepted: 07/02/2016] [Indexed: 06/06/2023]
Abstract
Sulfate in effluent is a challenging issue for wastewater reuse around the world. In this study, sulfur (S) removal and transformation in five batch constructed wetlands (CWs) treating secondary effluent were investigated. The results showed that the presence of the plant cattail (Typha latifolia) had little effect on sulfate removal, while the carbon-rich litter it generated greatly improved sulfate removal, but with limited sulfide accumulation in the pore-water. After sulfate removal, most of the S was deposited with the valence states S (-II) and S (0) on the iron-rich gravel surface, and acid volatile sulfide was the main S sink in the litter-added CWs. High-throughput pyrosequencing revealed that sulfate-reducing bacteria (i.e. Desulfobacter) and sulfide-oxidizing bacteria (i.e. Thiobacillus) were dominant in the litter-added CWs, which led to a sustainable S cycle between sulfate and sulfide. Overall, this study suggests that recycling plant litter and iron-rich filling material in CWs gives an opportunity to utilize the S in the wastewater as both an electron acceptor for sulfate reduction and as an electron donor for nitrate reduction coupled with sulfide oxidation. This leads to the simultaneous removal of sulfate, nitrate, and organics without discharging toxic sulfide into the receiving water body.
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Affiliation(s)
- Yi Chen
- Key Laboratory of Yangtze Water Environment of Ministry of the State Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China; Department of Applied Ecology, Faculty of Environmental Sciences, Czech University of Life Sciences, Prague, 16521, Czech Republic
| | - Yue Wen
- Key Laboratory of Yangtze Water Environment of Ministry of the State Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China.
| | - Qi Zhou
- Key Laboratory of Yangtze Water Environment of Ministry of the State Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China
| | - Jingang Huang
- Institute of Environmental Science and Engineering, Hangzhou Dianzi University, Hangzhou 310018, PR China
| | - Jan Vymazal
- Department of Applied Ecology, Faculty of Environmental Sciences, Czech University of Life Sciences, Prague, 16521, Czech Republic
| | - Peter Kuschk
- Department of Environmental Biotechnology, Helmholtz Centre for Environmental Research -UFZ, Permoserstr. 15, Leipzig, 04318, Germany
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Brantner JS, Senko JM. Response of soil-associated microbial communities to intrusion of coal mine-derived acid mine drainage. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014; 48:8556-8563. [PMID: 24971467 DOI: 10.1021/es502261u] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
A system has been identified in which coal mine-derived acid mine drainage (AMD) flows as a 0.5-cm-deep sheet over the terrestrial surface. This flow regime enhances the activities of Fe(II) oxidizing bacteria, which catalyze the oxidative precipitation of Fe from AMD. These activities give rise to Fe(III) (hydr)oxide-rich deposits (referred to as an iron mound) overlying formerly pristine soil. This iron mound has developed with no human intervention, indicating that microbiological activities associated with iron mounds may be exploited as an inexpensive and sustainable approach to remove Fe(II) from AMD. To evaluate the changes in microbial activities and communities that occur when AMD infiltrates initially pristine soil, we incubated AMD-unimpacted soil with site AMD. Continuous exposure of soil to AMD induced progressively greater rates of Fe(II) biooxidation. The development of Fe(II) oxidizing activities was enhanced by inoculation of soil with microorganisms associated with mature iron mound sediment. Evaluation of pyrosequencing-derived 16S rRNA gene sequences recovered from incubations revealed the development of microbial community characteristics that were similar to those of the mature iron mound sediment. Our results indicate that upon mixing of AMD with pristine soil, microbial communities develop that mediate rapid oxidative precipitation of Fe from AMD.
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Affiliation(s)
- Justin S Brantner
- Department of Biology, ‡Integrated Biosciences Program, and §Department of Geosciences, The University of Akron , Akron, Ohio 44325, United States
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14
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Brantner JS, Haake ZJ, Burwick JE, Menge CM, Hotchkiss ST, Senko JM. Depth-dependent geochemical and microbiological gradients in Fe(III) deposits resulting from coal mine-derived acid mine drainage. Front Microbiol 2014; 5:215. [PMID: 24860562 PMCID: PMC4030175 DOI: 10.3389/fmicb.2014.00215] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2014] [Accepted: 04/23/2014] [Indexed: 02/01/2023] Open
Abstract
We evaluated the depth-dependent geochemistry and microbiology of sediments that have developed via the microbially-mediated oxidation of Fe(II) dissolved in acid mine drainage (AMD), giving rise to a 8–10 cm deep “iron mound” that is composed primarily of Fe(III) (hydr)oxide phases. Chemical analyses of iron mound sediments indicated a zone of maximal Fe(III) reducing bacterial activity at a depth of approximately 2.5 cm despite the availability of dissolved O2 at this depth. Subsequently, Fe(II) was depleted at depths within the iron mound sediments that did not contain abundant O2. Evaluations of microbial communities at 1 cm depth intervals within the iron mound sediments using “next generation” nucleic acid sequencing approaches revealed an abundance of phylotypes attributable to acidophilic Fe(II) oxidizing Betaproteobacteria and the chloroplasts of photosynthetic microeukaryotic organisms in the upper 4 cm of the iron mound sediments. While we observed a depth-dependent transition in microbial community structure within the iron mound sediments, phylotypes attributable to Gammaproteobacterial lineages capable of both Fe(II) oxidation and Fe(III) reduction were abundant in sequence libraries (comprising ≥20% of sequences) from all depths. Similarly, abundances of total cells and culturable Fe(II) oxidizing bacteria were uniform throughout the iron mound sediments. Our results indicate that O2 and Fe(III) reduction co-occur in AMD-induced iron mound sediments, but that Fe(II)-oxidizing activity may be sustained in regions of the sediments that are depleted in O2.
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Affiliation(s)
- Justin S Brantner
- Department of Biology, The University of Akron Akron, OH, USA ; Integrated Bioscience Program, The University of Akron Akron, OH, USA
| | - Zachary J Haake
- Department of Geosciences, The University of Akron Akron, OH, USA
| | - John E Burwick
- Department of Geosciences, The University of Akron Akron, OH, USA
| | | | | | - John M Senko
- Department of Biology, The University of Akron Akron, OH, USA ; Integrated Bioscience Program, The University of Akron Akron, OH, USA ; Department of Geosciences, The University of Akron Akron, OH, USA
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15
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Sánchez-Andrea I, Sanz JL, Bijmans MFM, Stams AJM. Sulfate reduction at low pH to remediate acid mine drainage. JOURNAL OF HAZARDOUS MATERIALS 2014; 269:98-109. [PMID: 24444599 DOI: 10.1016/j.jhazmat.2013.12.032] [Citation(s) in RCA: 163] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2013] [Revised: 11/29/2013] [Accepted: 12/16/2013] [Indexed: 05/25/2023]
Abstract
Industrial activities and the natural oxidation of metallic sulfide-ores produce sulfate-rich waters with low pH and high heavy metals content, generally termed acid mine drainage (AMD). This is of great environmental concern as some heavy metals are highly toxic. Within a number of possibilities, biological treatment applying sulfate-reducing bacteria (SRB) is an attractive option to treat AMD and to recover metals. The process produces alkalinity, neutralizing the AMD simultaneously. The sulfide that is produced reacts with the metal in solution and precipitates them as metal sulfides. Here, important factors for biotechnological application of SRB such as the inocula, the pH of the process, the substrates and the reactor design are discussed. Microbial communities of sulfidogenic reactors treating AMD which comprise fermentative-, acetogenic- and SRB as well as methanogenic archaea are reviewed.
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Affiliation(s)
- Irene Sánchez-Andrea
- Departamento de Biología Molecular, Universidad Autónoma de Madrid, 28049 Madrid, Spain; Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands.
| | - Jose Luis Sanz
- Departamento de Biología Molecular, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Martijn F M Bijmans
- Wetsus, Centre of Sustainable Water Technology, P.O. Box 1113, 8900 CC Leeuwarden, The Netherlands
| | - Alfons J M Stams
- Laboratory of Microbiology, Wageningen University, Dreijenplein 10, 6703 HB Wageningen, The Netherlands; IBB - Institute for Biotechnology and Bioengineering, Centre of Biological Engineering, University of Minho, 4710-057 Braga, Portugal
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16
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Ivanova AE, Kizilova AK, Kanat’eva AY, Kravchenko IK, Kurganov AA, Belyaev SS. A hydrocarbon-oxidizing acidophilic thermotolerant bacterial association from sulfur blocks. Microbiology (Reading) 2013. [DOI: 10.1134/s0026261713040048] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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17
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Gilbert N, Fulthorpe R, Kirkwood AE. Microbial diversity, tolerance, and biodegradation potential of urban wetlands with different input regimes. Can J Microbiol 2012; 58:887-97. [PMID: 22716132 DOI: 10.1139/w2012-066] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Though microbial transformations are the primary mechanism of contaminant attenuation in wetlands, much remains to be known about microbial communities in urban wetlands. In this study, the microbial communities from urban wetlands with different runoff regimes (i.e., a contaminated remnant wetland, a constructed wetland, and a remnant wetland) were assessed for their capacity to attenuate and tolerate typical urban runoff pollutants. Results from denaturing gradient gel electrophoresis of 16S rRNA genes showed relatively high similarity in community composition among the wetlands. Community-level physiological profiles had similar results but exhibited within-site variation in both the contaminated remnant and remnant wetlands. All wetland communities were less tolerant to copper than 2,4-dichlorophenoxyacetic acid; however, the contaminated remnant wetland had the highest tolerance. All study wetlands had a limited capacity to biodegrade model chlorinated aromatic compounds (e.g., 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate). Though having different input regimes and contaminant exposure histories, the study wetlands were generally similar with respect to microbial community diversity and function. Additionally, the generally low capacity for these wetlands to biodegrade mobile chlorinated organic contaminants offers preliminary insight into the limited ecosystem services these wetlands may provide in urban environments.
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Affiliation(s)
- Nicolas Gilbert
- Faculty of Science, University of Ontario Institute of Technology, Oshawa, ON, Canada
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Pereyra LP, Hiibel SR, Perrault EM, Reardon KF, Pruden A. Effect of bioaugmentation and biostimulation on sulfate-reducing column startup captured by functional gene profiling. FEMS Microbiol Ecol 2012; 82:135-47. [DOI: 10.1111/j.1574-6941.2012.01412.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2011] [Revised: 04/05/2012] [Accepted: 05/08/2012] [Indexed: 11/28/2022] Open
Affiliation(s)
- Luciana P. Pereyra
- Department of Civil and Environmental Engineering; Colorado State University; Fort Collins; CO; USA
| | - Sage R. Hiibel
- Department of Chemical and Biological Engineering; Colorado State University; Fort Collins; CO; USA
| | - Elizabeth M. Perrault
- Cell and Molecular Biology Graduate Program; Colorado State University; Fort Collins; CO; USA
| | | | - Amy Pruden
- Department of Civil and Environmental Engineering; Colorado State University; Fort Collins; CO; USA
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19
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Ramond JB, Welz PJ, Cowan DA, Burton SG. Microbial community structure stability, a key parameter in monitoring the development of constructed wetland mesocosms during start-up. Res Microbiol 2012; 163:28-35. [DOI: 10.1016/j.resmic.2011.09.003] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2011] [Accepted: 09/15/2011] [Indexed: 10/16/2022]
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20
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Marty F, Ghiglione JF, Païssé S, Gueuné H, Quillet L, van Loosdrecht MCM, Muyzer G. Evaluation and optimization of nucleic acid extraction methods for the molecular analysis of bacterial communities associated with corroded carbon steel. BIOFOULING 2012; 28:363-380. [PMID: 22500778 DOI: 10.1080/08927014.2012.672644] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Different DNA and RNA extraction approaches were evaluated and protocols optimized on in situ corrosion products from carbon steel in marine environments. Protocols adapted from the PowerSoil DNA/RNA Isolation methods resulted in the best nucleic acid (NA) extraction performances (ie combining high NA yield, quality, purity, representativeness of microbial community and processing time efficiency). The PowerSoil RNA Isolation Kit was the only method which resulted in amplifiable RNA of good quality (ie intact 16S/23S rRNA). Sample homogenization and hot chemical (SDS) cell lysis combined with mechanical (bead-beating) lysis in presence of a DNA competitor (skim milk) contributed to improving substantially (around 23 times) the DNA yield of the PowerSoil DNA Isolation Kit. Apart from presenting NA extraction strategies for optimizing extraction parameters with corrosion samples from carbon steel, this study proposes DNA and RNA extraction procedures suited for comparative molecular analysis of total and active fractions of bacterial communities associated with carbon steel corrosion events, thereby contributing to improved MIC diagnosis and control.
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Affiliation(s)
- Florence Marty
- Department of Biotechnology, Delft University of Technology, Delft, the Netherlands
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21
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Lizama A K, Fletcher TD, Sun G. Removal processes for arsenic in constructed wetlands. CHEMOSPHERE 2011; 84:1032-1043. [PMID: 21549410 DOI: 10.1016/j.chemosphere.2011.04.022] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2010] [Revised: 04/05/2011] [Accepted: 04/07/2011] [Indexed: 05/30/2023]
Abstract
Arsenic pollution in aquatic environments is a worldwide concern due to its toxicity and chronic effects on human health. This concern has generated increasing interest in the use of different treatment technologies to remove arsenic from contaminated water. Constructed wetlands are a cost-effective natural system successfully used for removing various pollutants, and they have shown capability for removing arsenic. This paper reviews current understanding of the removal processes for arsenic, discusses implications for treatment wetlands, and identifies critical knowledge gaps and areas worthy of future research. The reactivity of arsenic means that different arsenic species may be found in wetlands, influenced by vegetation, supporting medium and microorganisms. Despite the fact that sorption, precipitation and coprecipitation are the principal processes responsible for the removal of arsenic, bacteria can mediate these processes and can play a significant role under favourable environmental conditions. The most important factors affecting the speciation of arsenic are pH, alkalinity, temperature, dissolved oxygen, the presence of other chemical species--iron, sulphur, phosphate--,a source of carbon, and the wetland substrate. Studies of the microbial communities and the speciation of arsenic in the solid phase using advanced techniques could provide further insights on the removal of arsenic. Limited data and understanding of the interaction of the different processes involved in the removal of arsenic explain the rudimentary guidelines available for the design of wetlands systems.
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Affiliation(s)
- Katherine Lizama A
- Department of Civil Engineering, Building 60, Monash University, VIC 3800, Australia.
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22
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Diversity of dissimilatory sulfite reductase genes (dsrAB) in a salt marsh impacted by long-term acid mine drainage. Appl Environ Microbiol 2010; 76:4819-28. [PMID: 20472728 DOI: 10.1128/aem.03006-09] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Sulfate-reducing bacteria (SRB) play a major role in the coupled biogeochemical cycling of sulfur and chalcophilic metal(loid)s. By implication, they can exert a strong influence on the speciation and mobility of multiple metal(loid) contaminants. In this study, we combined DsrAB gene sequencing and sulfur isotopic profiling to identify the phylogeny and distribution of SRB and to assess their metabolic activity in salt marsh sediments exposed to acid mine drainage (AMD) for over 100 years. Recovered dsrAB sequences from three sites sampled along an AMD flow path indicated the dominance of a single Desulfovibrio species. Other major sequence clades were related most closely to Desulfosarcina, Desulfococcus, Desulfobulbus, and Desulfosporosinus species. The presence of metal sulfides with low delta(34)S values relative to delta(34)S values of pore water sulfate showed that sediment SRB populations were actively reducing sulfate under ambient conditions (pH of approximately 2), although possibly within less acidic microenvironments. Interestingly, delta(34)S values for pore water sulfate were lower than those for sulfate delivered during tidal inundation of marsh sediments. 16S rRNA gene sequence data from sediments and sulfur isotope data confirmed that sulfur-oxidizing bacteria drove the reoxidation of biogenic sulfide coupled to oxygen or nitrate reduction over a timescale of hours. Collectively, these findings imply a highly dynamic microbially mediated cycling of sulfate and sulfide, and thus the speciation and mobility of chalcophilic contaminant metal(loid)s, in AMD-impacted marsh sediments.
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Kamimura K, Okabayashi A, Kikumoto M, Manchur MA, Wakai S, Kanao T. Analysis of iron- and sulfur-oxidizing bacteria in a treatment plant of acid rock drainage from a Japanese pyrite mine by use of ribulose-1, 5-bisphosphate carboxylase/oxygenase large-subunit gene. J Biosci Bioeng 2010; 109:244-8. [DOI: 10.1016/j.jbiosc.2009.08.007] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2009] [Revised: 07/21/2009] [Accepted: 08/12/2009] [Indexed: 11/16/2022]
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Truu M, Juhanson J, Truu J. Microbial biomass, activity and community composition in constructed wetlands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2009; 407:3958-3971. [PMID: 19157517 DOI: 10.1016/j.scitotenv.2008.11.036] [Citation(s) in RCA: 207] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2008] [Revised: 11/05/2008] [Accepted: 11/14/2008] [Indexed: 05/27/2023]
Abstract
The aim of the current article is to give an overview about microbial communities and their functioning but also about factors affecting microbial activity in the three most common types (surface flow and two types of sub-surface flow) of constructed wetlands. The paper reviews the community composition and structural diversity of the microbial biomass, analyzing different aspects of microbial activity with respect to wastewater properties, specific wetland type, and environmental parameters. A brief introduction about the application of different novel molecular techniques for the assessment of microbial communities in constructed wetlands is also given. Microbially mediated processes in constructed wetlands are mainly dependent on hydraulic conditions, wastewater properties, including substrate and nutrient quality and availability, filter material or soil type, plants, and different environmental factors. Microbial biomass is within similar ranges in both horizontal and vertical subsurface flow and surface flow constructed wetlands. Stratification of the biomass but also a stratified structural pattern of the bacterial community can be seen in subsurface flow systems. Microbial biomass C/N ratio is higher in horizontal flow systems compared to vertical flow systems, indicating the structural differences in microbial communities between those two constructed wetland types. The total activity of the microbial community is in the same range, but heterotrophic growth is higher in the subsurface (vertical flow) system compared to the surface flow systems. Available species-specific data about microbial communities in different types of wetlands is scarce and therefore it is impossible make any general conclusions about the dynamics of microbial community structure in wetlands, its relationship to removal processes and operational parameters.
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Affiliation(s)
- Marika Truu
- Institute of Molecular and Cell Biology, Faculty of Science and Technology, University of Tartu, 23 Riia Str, Tartu, Estonia
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25
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Yin J, Jiang L, Wen Y, Yao Z, Zhou Q. Treatment of polluted landscape lake water and community analysis of ammonia-oxidizing bacteria in constructed wetland. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART A, TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING 2009; 44:722-731. [PMID: 19412855 DOI: 10.1080/10934520902847877] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Three lab-scale horizontal subsurface flow constructed wetlands (HSSF CWs) were installed to demonstrate the use of constructed wetlands as a viable low-cost treatment option to purify the polluted scenery water. The goals of this study were to determine the effectiveness of the wetland treatment technology in reducing contaminants in polluted natural water body and to characterize bacterial composition present in 3 constructed wetlands. Water samples were collected periodically for 12 months from three wetlands to determine the efficiency of the treatment system in removal of chemical pollutants. The reduction by the treatment was greatest for chemical oxygen demand (COD), total nitrogen and total phosphorus, but the removal of nutrients obviously varied with seasons. Plant uptake was highly responsible for nitrogen and phosphorus removal. Denaturing gradient gel electrophoresis (DGGE) was used to study the diversity of microbial community in the constructed wetland. Changes in the total bacterial community and ammonia-oxidizing bacterial composition were examined by DGGE and sequencing of polymerase chain reaction (PCR)-amplified fragments of the gene carrying the ammonia monooxygenase subunit A gene (amoA) recovered from matrix samples and DGGE bands. DGGE analysis of wetlands samples revealed that seasonal change had an effect on the diversity and composition of microbial communities in constructed wetlands. The sequence analysis showed ammonia-oxidizing bacteria (AOB) in constructed wetlands were uncultivable and the population of AOB had a higher percentage of Nitrosomonas-like sequences from wetlands, while no Nitrosospira-like sequences were found.
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Affiliation(s)
- Jun Yin
- State Key Laboratory of Pollution Control and Resource Reuse, Tongji University, Shanghai, PR China
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26
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Yoon IH, Chang JS, Lee JH, Kim KW. Arsenite oxidation by Alcaligenes sp. strain RS-19 isolated from arsenic-contaminated mines in the Republic of Korea. ENVIRONMENTAL GEOCHEMISTRY AND HEALTH 2009; 31:109-117. [PMID: 18642094 DOI: 10.1007/s10653-008-9170-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2007] [Accepted: 04/02/2008] [Indexed: 05/26/2023]
Abstract
Arsenite [As(III)]-oxidizing bacteria play important roles in reducing arsenic [As] toxicity and mobility in As-contaminated areas. As-resistant bacteria were isolated from the soils of two abandoned mines in the Republic of Korea. The isolated bacteria showed relatively high resistances to As(III) up to 26 mM. The PCR-based 16S rRNA analysis revealed that the isolated As-resistant bacteria were close relatives to Serratia marcescensa, Pseudomonas putida, Pantoea agglomerans, and Alcaligenes sp. Among the five As-resistant bacterial isolates, Alcaligenes sp. strain RS-19 showed the highest As(III)-oxidizing activity in batch tests, completely oxidizing 1 mM of As(III) to As(V) within 40 h during heterotrophic growth. This study suggests that the indigenous bacteria have evolved to retain the ability to resist toxic As in the As-contaminated environments and moreover to convert the species to a less toxic form [e.g., from As(III) to As(V)] and also contribute the biogeochemical cycling of As by being involved in speciation of As.
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Affiliation(s)
- In-Ho Yoon
- Department of Environmental Science and Engineering, Gwangju Institute of Science and Technology (GIST), 261 Cheomdan-gwagiro, Buk-gu, Gwangju, Republic of Korea
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27
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Influence of acid mine drainage on microbial communities in stream and groundwater samples at Guryong Mine, South Korea. ACTA ACUST UNITED AC 2009. [DOI: 10.1007/s00254-008-1663-8] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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28
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Almeida WI, Vieira RP, Cardoso AM, Silveira CB, Costa RG, Gonzalez AM, Paranhos R, Medeiros JA, Freitas FA, Albano RM, Martins OB. Archaeal and bacterial communities of heavy metal contaminated acidic waters from zinc mine residues in Sepetiba Bay. Extremophiles 2008; 13:263-71. [PMID: 19089530 DOI: 10.1007/s00792-008-0214-2] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2008] [Accepted: 11/17/2008] [Indexed: 11/24/2022]
Abstract
Mining of metallic sulfide ore produces acidic water with high metal concentrations that have harmful consequences for aquatic life. To understand the composition and structure of microbial communities in acid mine drainage (AMD) waters associated with Zn mine tailings, molecular diversity of 16S genes was examined using a PCR, cloning, and sequencing approach. A total of 78 operational taxonomic units (OTUs) were obtained from samples collected at five different sites in and around mining residues in Sepetiba Bay, Brazil. We analyzed metal concentration, physical, chemical, and microbiological parameters related to prokaryotic diversity in low metal impacted compared to highly polluted environments with Zn at level of gram per liter and Cd-Pb at level of microgram per liter. Application of molecular methods for community structure analyses showed that Archaea and Bacteria groups present a phylogenetic relationship with uncultured environmental organisms. Phylogenetic analysis revealed that bacteria present at the five sites fell into seven known divisions, alpha-Proteobacteria (13.4%), beta-Proteobacteria (16.3%), gamma-Proteobacteria (4.3%), Sphingobacteriales (4.3%), Actinobacteria (3.2%) Acidobacteria (2.1%), Cyanobacteria (11.9%), and unclassified bacteria (44.5%). Almost all archaeal clones were related to uncultivated Crenarchaeota species, which were shared between high impacted and low impacted waters. Rarefaction curves showed that bacterial groups are more diverse than archaeal groups while the overall prokaryotic biodiversity is lower in high metal impacted environments than in less polluted habitats. Knowledge of this microbial community structure will help in understanding prokaryotic diversity, biogeography, and the role of microorganisms in zinc smelting AMD generation and perhaps it may be exploited for environmental remediation procedures in this area.
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Affiliation(s)
- Welington I Almeida
- Instituto de Bioquímica Médica, Universidade Federal do Rio de Janeiro, Centro de Ciências da Saúde, Bloco D, subsolo, sala 5, Rio de Janeiro 21941-590, Brazil
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29
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Senko JM, Wanjugi P, Lucas M, Bruns MA, Burgos WD. Characterization of Fe(II) oxidizing bacterial activities and communities at two acidic Appalachian coalmine drainage-impacted sites. ISME JOURNAL 2008; 2:1134-45. [PMID: 18548117 DOI: 10.1038/ismej.2008.60] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
We characterized the microbiologically mediated oxidative precipitation of Fe(II) from coalmine-derived acidic mine drainage (AMD) along flow-paths at two sites in northern Pennsylvania. At the Gum Boot site, dissolved Fe(II) was efficiently removed from AMD whereas minimal Fe(II) removal occurred at the Fridays-2 site. Neither site received human intervention to treat the AMD. Culturable Fe(II) oxidizing bacteria were most abundant at sampling locations along the AMD flow path corresponding to greatest Fe(II) removal and where overlying water contained abundant dissolved O(2). Rates of Fe(II) oxidation determined in laboratory-based sediment incubations were also greatest at these sampling locations. Ribosomal RNA intergenic spacer analysis and sequencing of partial 16S rRNA genes recovered from sediment bacterial communities revealed similarities among populations at points receiving regular inputs of Fe(II)-rich AMD and provided evidence for the presence of bacterial lineages capable of Fe(II) oxidation. A notable difference between bacterial communities at the two sites was the abundance of Chloroflexi-affiliated 16S rRNA gene sequences in clone libraries derived from the Gum Boot sediments. Our results suggest that inexpensive and reliable AMD treatment strategies can be implemented by mimicking the conditions present at the Gum Boot field site.
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Affiliation(s)
- John M Senko
- Department of Civil and Environmental Engineering, The Pennsylvania State University, University Park, PA 16802, USA.
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Hiibel SR, Pereyra LP, Inman LY, Tischer A, Reisman DJ, Reardon KF, Pruden A. Microbial community analysis of two field-scale sulfate-reducing bioreactors treating mine drainage. Environ Microbiol 2008; 10:2087-97. [PMID: 18430021 DOI: 10.1111/j.1462-2920.2008.01630.x] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
The microbial communities of two field-scale pilot sulfate-reducing bioreactors treating acid mine drainage (AMD), Luttrell and Peerless Jenny King (PJK), were compared using biomolecular tools and multivariate statistical analyses. The two bioreactors were well suited for this study because their geographic locations and substrate compositions were similar while the characteristics of influent AMD, configuration and degree of exposure to oxygen were distinct. The two bioreactor communities were found to be functionally similar, including cellulose degraders, fermenters and sulfate-reducing bacteria (SRB). Significant differences were found between the two bioreactors in phylogenetic comparisons of cloned 16S rRNA genes and adenosine 5'-phosphosulfate reductase (apsA) genes. The apsA gene clones from the Luttrell bioreactor were dominated by uncultured SRB most closely related to Desulfovibrio spp., while those of the PJK bioreactor were dominated by Thiobacillus spp. The fraction of the SRB genus Desulfovibrio was also higher at Luttrell than at PJK as determined by quantitative real-time polymerase chain reaction analysis. Oxygen exposure at PJK is hypothesized to be the primary cause of these differences. This study is the first rigorous phylogenetic investigation of field-scale bioreactors treating AMD and the first reported application of multivariate statistical analysis of remediation system microbial communities applying UniFrac software.
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Affiliation(s)
- Sage R Hiibel
- Department of Chemical and Biological Engineering, Colorado State University, Fort Collins, CO 80523, USA
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Nicomrat D, Dick WA, Tuovinen OH. Microbial populations identified by fluorescence in situ hybridization in a constructed wetland treating acid coal mine drainage. JOURNAL OF ENVIRONMENTAL QUALITY 2006; 35:1329-37. [PMID: 16825452 DOI: 10.2134/jeq2005.0325] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Microorganisms are an integral part of the biogeochemical processes in wetlands, yet microbial communities in sediments within constructed wetlands receiving acid mine drainage (AMD) are only poorly understood. The purpose of this study was to characterize the microbial diversity and abundance in a wetland receiving AMD using fluorescence in situ hybridization (FISH) analysis. Seasonal samples of oxic surface sediments, comprised of Fe(III) precipitates, were collected from two treatment cells of the constructed wetland system. The pH of the bulk samples ranged between pH 2.1 and 3.9. Viable counts of acidophilic Fe and S oxidizers and heterotrophs were determined with a most probable number (MPN) method. The MPN counts were only a fraction of the corresponding FISH counts. The sediment samples contained microorganisms in the Bacteria (including the subgroups of acidophilic Fe- and S-oxidizing bacteria and Acidiphilium spp.) and Eukarya domains. Archaea were present in the sediment surface samples at < 0.01% of the total microbial community. The most numerous bacterial species in this wetland system was Acidithiobacillus ferrooxidans, comprising up to 37% of the bacterial population. Acidithiobacillus thiooxidans was also abundant. Heterotrophs in the Acidiphilium genus totaled 20% of the bacterial population. Leptospirillum ferrooxidans was below the level of detection in the bacterial community. The results from the FISH technique from this field study are consistent with results from other experiments involving enumeration by most probable number, dot-blot hybridization, and denaturing gradient gel electrophoresis analyses and with the geochemistry of the site.
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Affiliation(s)
- Duongruitai Nicomrat
- Environmental Science Graduate Program, The Ohio State University, Columbus, OH 43210, USA
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