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Salazar J, González J, Riofrío R, Siavichay F, Carrera M, Mogrovejo A, Barrera-Galicia G, Valdez-Tenezaca A. MALDI-TOF Mass Spectrometry Characterization of Culturable Microbiota Associated with the Skin of Amphibians from the Southern Andes Mountains of Ecuador. MICROBIAL ECOLOGY 2025; 88:47. [PMID: 40402178 PMCID: PMC12098423 DOI: 10.1007/s00248-025-02555-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2025] [Accepted: 05/13/2025] [Indexed: 05/23/2025]
Abstract
Ecuador is recognized for having a high diversity of anuran species, which are distributed mainly south of the Andes mountains. However, due to their geographic location and accessibility, there are few studies related to the culturable microbiota of these amphibians in this region. The objective of this study was to explore the bacterial and fungal biodiversity present on the skin of wild anuran species in the southern Andes of Ecuador and to observe whether geographical barriers in the region could increase the variability of the culturable microbiota through MALDI-TOF mass spectrometry. This analysis revealed the presence of 29 bacterial taxa and 9 fungal taxa, consisting mainly of: Pseudomonas chlororaphis (28%), Acinetobacter iwoffii (14%), Pseudomonas fluorescens (14%), and Hortaea werneckii (26.4%), Fusarium solani (20.5%), Syncephalastrum spp. (20.5%), respectively. Diversity varied across the five sampling locations, with geographic location proving to be a significant driver of diversity. Some of the most abundant bacterial and fungal genera have important associations with skin diseases in wildlife and humans. This work represents a glimpse into the complex biodiversity of bacteria and fungi that inhabit the skin substrate, and further studies will be needed to better understand bacterial and fungal biodiversity with potential implications for establishing conservation strategies, along with the development of necessary animal protection measures.
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Affiliation(s)
- J Salazar
- Laboratorio de Ecología Microbiana y Principios Activos, Centro de Investigación Innovación y Transferencia de Tecnología CIITT, Universidad Católica de Cuenca, Vía a Biblín, Ricaurte, Cuenca, 010108, Ecuador.
- Grupo de Investigación Geociencia Ambiente y Recursos Naturales (GARN), Cuenca, 010108, Ecuador.
| | - J González
- Laboratorio de Ecología Microbiana y Principios Activos, Centro de Investigación Innovación y Transferencia de Tecnología CIITT, Universidad Católica de Cuenca, Vía a Biblín, Ricaurte, Cuenca, 010108, Ecuador
- Laboratorio de Entomología Agrícola Fitosanitario, Universidad Católica de Cuenca, Cuenca, 010101, Ecuador
| | - R Riofrío
- Laboratorio de Ecología Microbiana y Principios Activos, Centro de Investigación Innovación y Transferencia de Tecnología CIITT, Universidad Católica de Cuenca, Vía a Biblín, Ricaurte, Cuenca, 010108, Ecuador
| | - F Siavichay
- Centro de Conservación de Anfibios, Bioparque AMARU, Cuenca, 010109, Ecuador
| | - M Carrera
- Laboratorio de Ecología Microbiana y Principios Activos, Centro de Investigación Innovación y Transferencia de Tecnología CIITT, Universidad Católica de Cuenca, Vía a Biblín, Ricaurte, Cuenca, 010108, Ecuador
| | - A Mogrovejo
- Laboratorio de Ecología Microbiana y Principios Activos, Centro de Investigación Innovación y Transferencia de Tecnología CIITT, Universidad Católica de Cuenca, Vía a Biblín, Ricaurte, Cuenca, 010108, Ecuador
| | - G Barrera-Galicia
- Laboratorio de Microbiología Ambiental, Unidad Académica de Ciencias Químicas, Universidad de Zacatecas, Campus Siglo XXI, Carretera Zacatecas-Guadalajara Km 6, La Escondida, Zacatecas, 98160, México
| | - A Valdez-Tenezaca
- Laboratorio de Ecología Microbiana y Principios Activos, Centro de Investigación Innovación y Transferencia de Tecnología CIITT, Universidad Católica de Cuenca, Vía a Biblín, Ricaurte, Cuenca, 010108, Ecuador.
- Laboratorio de Patología Frutal, Departamento de Producción Agrícola, Facultad de Ciencias Agrarias, Universidad de Talca, Campus Talca, Av. Lircay S/N, 360000, Talca, Chile.
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Lucia Z, Giulio G, Matteo G, Stefano C, Irene LP, Paolo P, Giorgio B, Hauffe HC. More Than Meets the Eye: Unraveling the Interactions Between Skin Microbiota and Habitat in an Opportunistic Amphibian. MICROBIAL ECOLOGY 2025; 87:176. [PMID: 39853499 PMCID: PMC11761533 DOI: 10.1007/s00248-025-02489-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2024] [Accepted: 01/02/2025] [Indexed: 01/26/2025]
Abstract
With amphibians still holding the record as the most threatened class of terrestrial vertebrates, their skin microbiota has been shown to play a relevant role in their survival in a fast-changing world. Yet little is known about how abiotic factors associated with different aquatic habitats impact these skin microorganisms. Here we chose the yellow-bellied toad (Bombina variegata), a small anuran that colonizes a wide range of wetland habitats, to investigate how the diversity and composition of both its bacterial and fungal skin communities vary across different habitats and with water characteristics (temperature, pH, and dissolved oxygen) of these habitats. Skin microbiota was sampled from 14 sites in the Province of Trento (Italy), including natural pools, ephemeral ponds, irrigation tanks, and farm ponds. Interestingly, the diversity of the two microbial components was also highly correlated. Close associations between both the diversity and composition of water and skin communities were noted for each habitat and sampling site, suggesting that water bodies actively contribute to the skin microbiota assemblage. In addition, water pH, temperature, and dissolved oxygen affected both bacterial and fungal diversity of skin. We confirmed the presence of Batrachochytrium dendrobatidis in skin samples of animals collected from eight waterbodies, as well as more than 60 microbial taxa previously associated with resistance to this pathogen. We concluded that both skin bacterial and fungal communities appear to be influenced by each other as well as by environmental communities and conditions, and these relationships connecting the whole ecosystem should be considered in future research concerning amphibian conservation.
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Affiliation(s)
- Zanovello Lucia
- Conservation Genomics Research Unit and Animal, Environmental and Antique DNA Platform, Research and Innovation Centre, Fondazione Edmund Mach, San Michele All'Adige, TN, Italy
- Conservation Biology Unit, MUSE-Science Museum of Trento, Trento, Italy
- Population Genetics and Genomics Group, Department of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy
| | - Galla Giulio
- Conservation Genomics Research Unit and Animal, Environmental and Antique DNA Platform, Research and Innovation Centre, Fondazione Edmund Mach, San Michele All'Adige, TN, Italy
| | - Girardi Matteo
- Conservation Genomics Research Unit and Animal, Environmental and Antique DNA Platform, Research and Innovation Centre, Fondazione Edmund Mach, San Michele All'Adige, TN, Italy
| | - Casari Stefano
- Conservation Genomics Research Unit and Animal, Environmental and Antique DNA Platform, Research and Innovation Centre, Fondazione Edmund Mach, San Michele All'Adige, TN, Italy
| | - Lo Presti Irene
- Conservation Genomics Research Unit and Animal, Environmental and Antique DNA Platform, Research and Innovation Centre, Fondazione Edmund Mach, San Michele All'Adige, TN, Italy
| | - Pedrini Paolo
- Conservation Biology Unit, MUSE-Science Museum of Trento, Trento, Italy
| | - Bertorelle Giorgio
- Population Genetics and Genomics Group, Department of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy
| | - Heidi C Hauffe
- Conservation Genomics Research Unit and Animal, Environmental and Antique DNA Platform, Research and Innovation Centre, Fondazione Edmund Mach, San Michele All'Adige, TN, Italy.
- National Biodiversity Future Center (NBFC), Palermo, Italy.
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Felix-Nascimento G, Lucena RB, da Fonseca CF, da Silva IJS, de Moraes CCN, de Carvalho CAC, de Moura GJB, Vieira FM, Ribeiro LB, de Oliveira JB. Mineral profile and histopathological findings in the liver of white-lipped frog (Leptodactylidae) from the morphoclimatic domain of the Caatingas, Brazil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:10750-10765. [PMID: 38206463 DOI: 10.1007/s11356-024-31908-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Accepted: 01/03/2024] [Indexed: 01/12/2024]
Abstract
This study aimed to investigate the mineral profile and histopathological findings in the liver of Leptodactylus macrosternum (white-lipped frog) and to assess the association between melanomacrophage areas and hepatic fungal granuloma with several factors such as weight, snout-cloacal length, sex, hepatosomatic index, season (dry and rainy), and condition factor K. A total of 135 frogs of different ages were collected from three areas in the city of Petrolina, Pernambuco, with varying land use (conventional agriculture, organic agriculture, and Caatinga stricto sensu). The liver of all specimens exhibited changes such as granulomatous lesions, inflammatory cell infiltrate, blood vessel congestion, and sinusoid dilation. The melanomacrophage areas were influenced by weight, snout-cloacal length, and hepatosomatic index. Our findings revealed a positive correlation between body size (weight and snout-cloacal length) and melanomacrophage/hepatic granuloma, while the hepatosomatic index showed a negative relationship. For the condition factor K, only age presents relationship. Eleven elements were quantified for the mineral profile, with aluminum (Al), iron (Fe), and zinc (Zn) being the most abundant in both liver and muscle. Although the histopathological findings and mineral profile of the liver and muscle in this study indicate an effect on the health of L. macrosternum in different collection areas, confirming the relationship between environmental characteristics and these findings requires future studies. Furthermore, long-term studies would be necessary to allow the monitoring of all stages of development of these populations, from tadpoles to adults, for a better evaluation of these effects in L. macrosternum.
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Affiliation(s)
- Gabriela Felix-Nascimento
- Laboratory of Anatomy of Domestic and Wild Animals (LAADS), Federal University of the San Francisco Valley (UNIVASF), Rodovia BR-407, Km. 12 Lote 543 S/n Projeto de Irrigação Nilo Coelho, Petrolina, Pernambuco, 56300-000, Brazil.
- Postgraduate Program in Animal Bioscience (PPGBA), Rural Federal University of Pernambuco (UFRPE), Rua Dom Manuel de Medeiros, S/N, Dois Irmãos, Recife, Pernambuco, 52171-900, Brazil.
- Federal University of the San Francisco Valley (UNIVASF), Rodovia BR-407, Km. 12 Lote 543 S/n Projeto de Irrigação Nilo Coelho, Petrolina, Pernambuco, 56300-000, Brazil.
| | - Ricardo Barbosa Lucena
- Microscopy Sector of the Center for Agricultural Sciences, Federal University of Paraiba (UFPB), Rodovia PB 079, Km 12, Areia, Paraíba, 58.397-000, Brazil
| | - Cristina Farias da Fonseca
- Brazilian Institute for the Environment and Renewable Natural Resources (IBAMA), Casa Forte, Av. 17 de Agosto 1057, Recife, Pernambuco, 52060-590, Brazil
| | - Iago José Santos da Silva
- Rural Federal University of Pernambuco (UFRPE), Rua Dom Manuel de Medeiros, S/N, Dois Irmãos, Recife, Pernambuco, 52171-900, Brazil
| | - Caio Carvalho Novais de Moraes
- Federal University of the San Francisco Valley (UNIVASF), Rodovia BR-407, Km. 12 Lote 543 S/n Projeto de Irrigação Nilo Coelho, Petrolina, Pernambuco, 56300-000, Brazil
| | - Carla Adrielle Costa de Carvalho
- Federal University of the San Francisco Valley (UNIVASF), Rodovia BR-407, Km. 12 Lote 543 S/n Projeto de Irrigação Nilo Coelho, Petrolina, Pernambuco, 56300-000, Brazil
| | - Geraldo Jorge Barbosa de Moura
- Postgraduate Program in Animal Bioscience (PPGBA), Rural Federal University of Pernambuco (UFRPE), Rua Dom Manuel de Medeiros, S/N, Dois Irmãos, Recife, Pernambuco, 52171-900, Brazil
- Rural Federal University of Pernambuco (UFRPE), Rua Dom Manuel de Medeiros, S/N, Dois Irmãos, Recife, Pernambuco, 52171-900, Brazil
| | - Fabiano Matos Vieira
- Federal University of the San Francisco Valley (UNIVASF), Rodovia BR-407, Km. 12 Lote 543 S/n Projeto de Irrigação Nilo Coelho, Petrolina, Pernambuco, 56300-000, Brazil
| | - Leonardo Barros Ribeiro
- Federal University of the San Francisco Valley (UNIVASF), Rodovia BR-407, Km. 12 Lote 543 S/n Projeto de Irrigação Nilo Coelho, Petrolina, Pernambuco, 56300-000, Brazil
| | - Jaqueline Bianque de Oliveira
- Postgraduate Program in Animal Bioscience (PPGBA), Rural Federal University of Pernambuco (UFRPE), Rua Dom Manuel de Medeiros, S/N, Dois Irmãos, Recife, Pernambuco, 52171-900, Brazil
- Rural Federal University of Pernambuco (UFRPE), Rua Dom Manuel de Medeiros, S/N, Dois Irmãos, Recife, Pernambuco, 52171-900, Brazil
- Parasitology Laboratory (LAPAR), Rural Federal University of Pernambuco (UFRPE), Rua Dom Manuel de Medeiros, S/N, Dois Irmãos, Recife, Pernambuco, 52171-900, Brazil
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