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Gaines LGT, Sinclair G, Williams AJ. A proposed approach to defining per- and polyfluoroalkyl substances (PFAS) based on molecular structure and formula. INTEGRATED ENVIRONMENTAL ASSESSMENT AND MANAGEMENT 2023; 19:1333-1347. [PMID: 36628931 PMCID: PMC10827356 DOI: 10.1002/ieam.4735] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Revised: 12/06/2022] [Accepted: 01/02/2023] [Indexed: 06/17/2023]
Abstract
Various groups and researchers, including the authors of this work, have proposed different definitions of what constitutes per- and polyfluoroalkyl substances (PFAS). The different definitions are all based on a structural definition. Although a structural definition is reasonable, such an approach is difficult to execute if the intent is to narrow or refine the definition. This approach can also lead to inexplicable demarcations of what are and what are not PFAS. Our objective was to create a narrow, simple PFAS definition that allows interested groups to communicate with a common understanding and will also serve as a starting point to focus on substances that are of real environmental concern. Our studies have demonstrated that numerous highly fluorinated complex structures exist that make a structure-based definition difficult. We suggest that a definition based on fractional fluorination expressed as the percentage of fluorine of a molecular formula using atom counting offers advantages. Using a combination of a structure-based definition and a definition based on the fractional percentage of the molecular formula that is fluorine can provide a more inclusive and succinct definition. Thus, we propose a new definition based on four substructures along with any structures where the molecular formula is 30% fluorine by atom count. Integr Environ Assess Manag 2023;19:1333-1347. Published 2023. This article is a U.S. Government work and is in the public domain in the USA. Integrated Environmental Assessment and Management published by Wiley Periodicals LLC on behalf of Society of Environmental Toxicology & Chemistry (SETAC).
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Affiliation(s)
- Linda G. T. Gaines
- Office of Superfund Remediation and Technology Innovation, Office of Land and Emergency Management, US Environmental Protection Agency, DC, Washington, USA
| | - Gabriel Sinclair
- ORAU Student Services Contractor to Center for Computational Toxicology and Exposure, Office of Research and Development, US Environmental Protection Agency, NC, Research Triangle Park, USA
| | - Antony J. Williams
- Office of Research & Development, Center for Computational Toxicology & Exposure, US Environmental Protection Agency, NC, Research Triangle Park, USA
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2
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Wackett LP. Strategies for the Biodegradation of Polyfluorinated Compounds. Microorganisms 2022; 10:microorganisms10081664. [PMID: 36014082 PMCID: PMC9415301 DOI: 10.3390/microorganisms10081664] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Revised: 08/14/2022] [Accepted: 08/16/2022] [Indexed: 01/01/2023] Open
Abstract
Many cite the strength of C–F bonds for the poor microbial biodegradability of polyfluorinated organic compounds (PFCs). However, commercial PFCs almost invariably contain more functionality than fluorine. The additional functionality provides a weak entry point for reactions that activate C–F bonds and lead to their eventual cleavage. This metabolic activation strategy is common in microbial biodegradation pathways and is observed with aromatic hydrocarbons, chlorinated compounds, phosphonates and many other compounds. Initial metabolic activation precedes critical bond breakage and assimilation of nutrients. A similar strategy with commercial PFCs proceeds via initial attack at the non-fluorinated functionalities: sulfonates, carboxylates, chlorines, phenyl rings, or phosphonates. Metabolic transformation of these non-fluorinated groups can activate the C–F bonds, allowing more facile cleavage than a direct attack on the C–F bonds. Given that virtually all compounds denoted as “PFAS” are not perfluorinated and are not alkanes, it is posited here that considering their individual chemical classes is more useful for both chemical and microbiological considerations of their fate.
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Affiliation(s)
- Lawrence P Wackett
- Department of Biochemistry, Molecular Biology and Biophysics and BioTechnology Institute, University of Minnesota, Minneapolis, MN 55455, USA
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3
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Lakshminarasimman N, Gewurtz SB, Parker WJ, Smyth SA. Removal and formation of perfluoroalkyl substances in Canadian sludge treatment systems - A mass balance approach. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 754:142431. [PMID: 33254854 DOI: 10.1016/j.scitotenv.2020.142431] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 09/14/2020] [Accepted: 09/14/2020] [Indexed: 06/12/2023]
Abstract
Poly- and per-fluoroalkyl substances (PFAS) are an emerging class of anthropogenic contaminants whose occurrence has raised concerns with the beneficial reuse of biosolids from wastewater treatment. This study evaluated the behavior of thirteen PFAS in nine Canadian sludge treatment systems including pelletization, alkaline stabilization, aerobic and anaerobic digestion processes. The composition of the overall PFAS-fluorine (ΣPFAS-F) loading in a system fed with only primary sludge was dominated by perfluorodecanoate (PFDA), whereas systems with blended primary and waste activated sludge feeds had a mix of short and long chain PFAS in raw sludges and treated biosolids. An increase in average ΣPFAS-F mass flow was observed through pelletization (19% formation) and alkaline stabilization (99% formation) processes indicating negative removal or contaminant formation. One of the two aerobic digestion systems and three of the five anaerobic digestion systems showed modest reductions (< 40% removal) in ΣPFAS-F loading. Long chain PFAS such as perfluorodecanoate (PFDA) and perfluorooctane sulfonate (PFOS) exhibited a wide variation in behavior ranging from substantial formation (> 75% formation) to modest removal (42% removal) in the surveyed systems while short chain perfluoropentanoate (PFPeA) mass flows increased through the three systems where they occurred. Overall, the contaminant mass balances revealed that there were significant changes in mass flows of the target PFAS through all kinds of sludge treatment systems. The results of this study on PFAS fate through sludge processing can inform future global PFAS risk management activities as well as sludge treatment considerations.
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Affiliation(s)
| | - Sarah B Gewurtz
- Science and Technology Branch, Environment and Climate Change Canada, Burlington, ON L7S 1A1, Canada
| | - Wayne J Parker
- Department of Civil and Environmental Engineering, University of Waterloo, Waterloo, ON N2L 3G1, Canada
| | - Shirley Anne Smyth
- Science and Technology Branch, Environment and Climate Change Canada, Burlington, ON L7S 1A1, Canada
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Xie Y, Chen G, May AL, Yan J, Brown LP, Powers JB, Campagna SR, Löffler FE. Pseudomonas sp. Strain 273 Degrades Fluorinated Alkanes. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:14994-15003. [PMID: 33190477 DOI: 10.1021/acs.est.0c04029] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Fluorinated organic compounds have emerged as environmental constituents of concern. We demonstrate that the alkane degrader Pseudomonas sp. strain 273 utilizes terminally monofluorinated C7-C10 alkanes and 1,10-difluorodecane (DFD) as the sole carbon and energy sources in the presence of oxygen. Strain 273 degraded 1-fluorodecane (FD) (5.97 ± 0.22 mM, nominal) and DFD (5.62 ± 0.13 mM, nominal) within 7 days of incubation, and 92.7 ± 3.8 and 90.1 ± 1.9% of the theoretical maximum amounts of fluorine were recovered as inorganic fluoride, respectively. With n-decane, strain 273 attained (3.24 ± 0.14) × 107 cells per μmol of carbon consumed, while lower biomass yields of (2.48 ± 0.15) × 107 and (1.62 ± 0.23) × 107 cells were measured with FD or DFD as electron donors, respectively. The organism coupled decanol and decanoate oxidation to denitrification, but the utilization of (fluoro)alkanes was strictly oxygen-dependent, presumably because the initial attack on the terminal carbon requires oxygen. Fluorohexanoate was detected as an intermediate in cultures grown with FD or DFD, suggesting that the initial attack on the fluoroalkanes can occur on the terminal methyl or fluoromethyl groups. The findings indicate that specialized bacteria such as Pseudomonas sp. strain 273 can break carbon-fluorine bonds most likely with oxygenolytic enzyme systems and that terminally monofluorinated alkanes are susceptible to microbial degradation. The findings have implications for the fate of components associated with aqueous film-forming foam (AFFF) mixtures.
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Affiliation(s)
- Yongchao Xie
- Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee 37996, United States
- Center for Environmental Biotechnology, University of Tennessee, Knoxville, Tennessee 37996, United States
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Gao Chen
- Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee 37996, United States
- Center for Environmental Biotechnology, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Amanda L May
- Center for Environmental Biotechnology, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Jun Yan
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning 110016, China
| | - Lindsay P Brown
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Joshua B Powers
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Shawn R Campagna
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
- Biological and Small Molecule Mass Spectrometry Core, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Frank E Löffler
- Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee 37996, United States
- Center for Environmental Biotechnology, University of Tennessee, Knoxville, Tennessee 37996, United States
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
- Department of Microbiology, University of Tennessee, Knoxville, Tennessee 37996, United States
- Department of Biosystems Engineering and Soil Science, University of Tennessee, Knoxville, Tennessee 37996, United States
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Abstract
The urgent need to replace fossil fuels has seen macroalgae advancing as a potential feedstock for anaerobic digestion. The natural methane productivity (dry weight per hectare) of seaweeds is greater than in many terrestrial plant systems. As part of their defence systems, seaweeds, unlike terrestrial plants, produce a range of halogenated secondary metabolites, especially chlorinated and brominated compounds. Some orders of brown seaweeds also accumulate iodine, up to 1.2% of their dry weight. Fluorine remains rather unusual within the chemical structure. Halogenated hydrocarbons have moderate to high toxicities. In addition, halogenated organic compounds constitute a large group of environmental chemicals due to their extensive use in industry and agriculture. In recent years, concerns over the environmental fate and release of these halogenated organic compounds have resulted in research into their biodegradation and the evidence emerging shows that many of these compounds are more easily degraded under strictly anaerobic conditions compared to aerobic biodegradation. Biosorption via seaweed has become an alternative to the existing technologies in removing these pollutants. Halogenated compounds are known inhibitors of methane production from ruminants and humanmade anaerobic digesters. The focus of this paper is reviewing the available information on the effects of halogenated organic compounds on anaerobic digestion.
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Pimviriyakul P, Wongnate T, Tinikul R, Chaiyen P. Microbial degradation of halogenated aromatics: molecular mechanisms and enzymatic reactions. Microb Biotechnol 2020; 13:67-86. [PMID: 31565852 PMCID: PMC6922536 DOI: 10.1111/1751-7915.13488] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Revised: 09/01/2019] [Accepted: 09/03/2019] [Indexed: 12/12/2022] Open
Abstract
Halogenated aromatics are used widely in various industrial, agricultural and household applications. However, due to their stability, most of these compounds persist for a long time, leading to accumulation in the environment. Biological degradation of halogenated aromatics provides sustainable, low-cost and environmentally friendly technologies for removing these toxicants from the environment. This minireview discusses the molecular mechanisms of the enzymatic reactions for degrading halogenated aromatics which naturally occur in various microorganisms. In general, the biodegradation process (especially for aerobic degradation) can be divided into three main steps: upper, middle and lower metabolic pathways which successively convert the toxic halogenated aromatics to common metabolites in cells. The most difficult step in the degradation of halogenated aromatics is the dehalogenation step in the middle pathway. Although a variety of enzymes are involved in the degradation of halogenated aromatics, these various pathways all share the common feature of eventually generating metabolites for utilizing in the energy-producing metabolic pathways in cells. An in-depth understanding of how microbes employ various enzymes in biodegradation can lead to the development of new biotechnologies via enzyme/cell/metabolic engineering or synthetic biology for sustainable biodegradation processes.
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Affiliation(s)
- Panu Pimviriyakul
- Department of BiotechnologyFaculty of Engineering and Industrial TechnologySilpakorn UniversityNakhon Pathom73000Thailand
| | - Thanyaporn Wongnate
- School of Biomolecular Science and EngineeringVidyasirimedhi Institute of Science and Technology (VISTEC)Wangchan ValleyRayong21210Thailand
| | - Ruchanok Tinikul
- Department of Biochemistry and Center for Excellence in Protein and Enzyme TechnologyFaculty of ScienceMahidol UniversityBangkok10400Thailand
| | - Pimchai Chaiyen
- School of Biomolecular Science and EngineeringVidyasirimedhi Institute of Science and Technology (VISTEC)Wangchan ValleyRayong21210Thailand
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Tiedt O, Mergelsberg M, Boll K, Müller M, Adrian L, Jehmlich N, von Bergen M, Boll M. ATP-Dependent C-F Bond Cleavage Allows the Complete Degradation of 4-Fluoroaromatics without Oxygen. mBio 2016; 7:e00990-16. [PMID: 27507824 PMCID: PMC4992971 DOI: 10.1128/mbio.00990-16] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Accepted: 07/14/2016] [Indexed: 01/29/2023] Open
Abstract
UNLABELLED Complete biodegradation of the abundant and persistent fluoroaromatics requires enzymatic cleavage of an arylic C-F bond, probably the most stable single bond of a biodegradable organic molecule. While in aerobic microorganisms defluorination of fluoroaromatics is initiated by oxygenases, arylic C-F bond cleavage has never been observed in the absence of oxygen. Here, an oxygen-independent enzymatic aryl fluoride bond cleavage is described during the complete degradation of 4-fluorobenzoate or 4-fluorotoluene to CO2 and HF in the denitrifying Thauera aromatica: the ATP-dependent defluorination of 4-fluorobenzoyl-coenzyme A (4-F-BzCoA) to benzoyl-coenzyme A (BzCoA) and HF, catalyzed by class I BzCoA reductase (BCR). Adaptation to growth with the fluoroaromatics was accomplished by the downregulation of a promiscuous benzoate-CoA ligase and the concomitant upregulation of 4-F-BzCoA-defluorinating/dearomatizing BCR on the transcriptional level. We propose an unprecedented mechanism for reductive arylic C-F bond cleavage via a Birch reduction-like mechanism resulting in a formal nucleophilic aromatic substitution. In the proposed anionic 4-fluorodienoyl-CoA transition state, fluoride elimination to BzCoA is favored over protonation to a fluorinated cyclic dienoyl-CoA. IMPORTANCE Organofluorides are produced as pesticides, pharmaceuticals, and other chemicals and comprise approximately one quarter of all organic compounds in the pharmaceutical and agricultural sectors; they are considered a growing class of environmentally relevant persistent pollutants. Especially in the case of fluoroaromatics, biodegradation is hampered by the extreme stability of the arylic C-F bond. In aerobic microorganisms, degradation proceeds via oxygenase-dependent C-F bond cleavage reactions, whereas the enzymes involved in the degradation of fluoroaromatics at anoxic sites are unknown. Here we report a strategy for the complete biodegradation of a fluoroaromatic to CO2 and HF in a denitrifying bacterium via activation to a CoA ester, followed by oxygen-independent arylic C-F bond cleavage catalyzed by an ATP-dependent enzyme. This reaction, in conjunction with a transcriptional adaptation to fluorinated growth substrates, is essential for the anoxic biodegradation of 4-fluorobenzoate/4-F-toluene and probably other fluoroaromatics.
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Affiliation(s)
- Oliver Tiedt
- Faculty of Biology, Microbiology, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
| | - Mario Mergelsberg
- Faculty of Biology, Microbiology, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
| | - Kerstin Boll
- Faculty of Biology, Microbiology, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
| | - Michael Müller
- Institute of Pharmaceutical Sciences, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
| | - Lorenz Adrian
- Department of Isotope Biogeochemistry Proteomics, Helmholtz Centre for Environmental Research, UFZ, Leipzig, Germany
| | - Nico Jehmlich
- Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research, UFZ, Leipzig, Germany
| | - Martin von Bergen
- Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research, UFZ, Leipzig, Germany Faculty of Biosciences, Pharmacy and Psychology, University of Leipzig, Leipzig, Germany Department of Chemistry and Bioscience, University of Aalborg, Aalborg, Denmark
| | - Matthias Boll
- Faculty of Biology, Microbiology, Albert-Ludwigs-Universität Freiburg, Freiburg, Germany
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Feng H, Liang Y, Guo K, Long Y, Cong Y, Shen D. Addition of nitrite enhances the electrochemical defluorination of 2-fluoroaniline. JOURNAL OF HAZARDOUS MATERIALS 2015; 300:607-614. [PMID: 26266896 DOI: 10.1016/j.jhazmat.2015.06.071] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2015] [Revised: 06/26/2015] [Accepted: 06/30/2015] [Indexed: 06/04/2023]
Abstract
This study introduces a novel approach that uses the interaction of pollutants with added nitrite to produce diazonium salts, which cause in situ self-assembly of the pollutants on carbon electrodes, to improve their 2-fluoroaniline (2-FA) defluorination and removal performance. The 2-FA degradation performance, electrode properties, electrochemical properties and degradation pathway were investigated. The reactor containing NO2(-) achieved a 2-FA removal efficiency of 90.1% and a defluorination efficiency of 38% within 48 h, 1.4 and 2.3 times higher than the corresponding results achieved without NO2(-), respectively. The residual NO2(-) was less than 0.5mg/L in the reactor containing added NO2(-), which would not cause serious secondary pollution. Scanning electron microscopy (SEM) and X-ray photoelectron spectroscopy (XPS) results proved that the carbon anode surface was successfully modified with benzene polymer, and electrochemical tests confirmed that the electrochemical activity of the modified anode was enhanced significantly. The C-F bond was weakened by the effect of the positive charge of the benzenediazonium groups, and the high electrochemical activity of the carbon anode enhanced the electrochemical performance of the system to accelerate defluorination. Thus, the present electrical method involving nitrite nitrogen is very promising for the treatment of wastewater containing fluoroaniline compounds.
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Affiliation(s)
- Huajun Feng
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou 310012, China; Laboratory of Microbial Ecology and Technology, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium
| | - Yuxiang Liang
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou 310012, China
| | - Kun Guo
- Laboratory of Microbial Ecology and Technology, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium
| | - Yuyang Long
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou 310012, China
| | - Yanqing Cong
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China.
| | - Dongsheng Shen
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou 310012, China
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10
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Yano K, Wachi M, Tsuchida S, Kitazume T, Iwai N. Degradation of benzotrifluoride via the dioxygenase pathway in Rhodococcus sp. 065240. Biosci Biotechnol Biochem 2015; 79:496-504. [DOI: 10.1080/09168451.2014.982502] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Abstract
Abstract
We previously isolated Rhodococcus sp. 065240, which catalyzes the defluorination of benzotrifluoride (BTF). In order to investigate the mechanism of this degradation of BTF, we performed proteomic analysis of cells grown with or without BTF. Three proteins, which resemble dioxygenase pathway enzymes responsible for isopropylbenzene degradation from Rhodococcus erythropolis BD2, were induced by BTF. Genomic PCR and DNA sequence analysis revealed that the Rhodococcus sp. 065240 carries the gene cluster, btf, which is highly homologous to the ipb gene cluster from R. erythropolis BD2. A mutant strain, which could not catalyze BTF defluorination, was isolated from 065240 strain by UV mutagenesis. The mutant strain had one mutation in the btfT gene, which encodes a response regulator of the two component system. The defluorinating ability of the mutant strain was recovered by complementation of btfT. These results suggest that the btf gene cluster is responsible for degradation of BTF.
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Affiliation(s)
- Kenichi Yano
- Department of Bioengineering, Tokyo Institute of Technology, Yokohama, Japan
| | - Masaaki Wachi
- Department of Bioengineering, Tokyo Institute of Technology, Yokohama, Japan
| | - Sakiko Tsuchida
- Department of Bioengineering, Tokyo Institute of Technology, Yokohama, Japan
| | - Tomoya Kitazume
- Department of Bioengineering, Tokyo Institute of Technology, Yokohama, Japan
| | - Noritaka Iwai
- Department of Bioengineering, Tokyo Institute of Technology, Yokohama, Japan
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Zhang X, Feng H, Liang Y, Zhao Z, Long Y, Fang Y, Wang M, Yin J, Shen D. The relief of microtherm inhibition for p-fluoronitrobenzene mineralization using electrical stimulation at low temperatures. Appl Microbiol Biotechnol 2015; 99:4485-94. [DOI: 10.1007/s00253-014-6357-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2014] [Revised: 12/17/2014] [Accepted: 12/20/2014] [Indexed: 10/24/2022]
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Pandith A, Kumar A, Kim HS. 9-N-Alkylaminomethylanthracene probes for selective fluorescence sensing of pentafluorophenol. RSC Adv 2015. [DOI: 10.1039/c5ra15900h] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
9-N-Alkylaminomethylanthracenes (1 and 2) were synthesised for halophenol sensing, and their selectivity and sensitivity towards pentafluorophenol (PFP) in ethanol were investigated.
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Affiliation(s)
- Anup Pandith
- Department of Applied Chemistry
- School of Applied Chemical Engineering
- Kyungpook National University
- Daegu 702-701
- Republic of Korea
| | - Ashwani Kumar
- Department of Applied Chemistry
- School of Applied Chemical Engineering
- Kyungpook National University
- Daegu 702-701
- Republic of Korea
| | - Hong-Seok Kim
- Department of Applied Chemistry
- School of Applied Chemical Engineering
- Kyungpook National University
- Daegu 702-701
- Republic of Korea
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Im J, Walshe-Langford GE, Moon JW, Löffler FE. Environmental fate of the next generation refrigerant 2,3,3,3-tetrafluoropropene (HFO-1234yf). ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014; 48:13181-13187. [PMID: 25329364 DOI: 10.1021/es5032147] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The hydrofluoroolefin 2,3,3,3-tetrafluoropropene (HFO-1234yf) has been introduced to replace 1,1,1,2-tetrafluoroethane (HFC-134a) as refrigerant in mobile, including vehicle, air conditioning systems because of its lower global warming potential. HFO-1234yf is volatile at ambient temperatures; however, high production volumes and widespread handling are expected to release this fluorocarbon into terrestrial and aquatic environments, including groundwater. Laboratory experiments explored HFO-1234yf degradation by (i) microbial processes under oxic and anoxic conditions, (ii) abiotic processes mediated by reactive mineral phases and zerovalent iron (Fe(0), ZVI), and (iii) cobalamin-catalyzed biomimetic transformation. These investigations demonstrated that HFO-1234yf was recalcitrant to microbial (co)metabolism and no transformation was observed in incubations with ZVI, makinawite (FeS), sulfate green rust (GR(SO4)), magnetite (Fe(3)O(4)), and manganese oxide (MnO2). Sequential reductive defluorination of HFO-1234yf to 3,3,3-trifluoropropene and 3,3-dichloropropene with concomitant stoichiometric release of fluoride occurred in incubations with reduced cobalamins (e.g., vitamin B12) indicating that biomolecules can transform HFO-1234yf at circumneutral pH and at ambient temperature. Taken together, these findings suggest that HFO-1234yf recalcitrance in aquifers should be expected; however, HFO-1234yf is not inert and a biomolecule may mediate reductive transformation in low redox environments, albeit at low rates.
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Affiliation(s)
- Jeongdae Im
- Center for Environmental Biotechnology, University of Tennessee , Knoxville, Tennessee 37996, United States
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14
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Feng H, Zhang X, Liang Y, Wang M, Shen D, Ding Y, Huang B, Shentu J. Enhanced removal of p-fluoronitrobenzene using bioelectrochemical system. WATER RESEARCH 2014; 60:54-63. [PMID: 24821195 DOI: 10.1016/j.watres.2014.03.027] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2013] [Revised: 03/08/2014] [Accepted: 03/13/2014] [Indexed: 06/03/2023]
Abstract
p-Fluoronitrobenzene (p-FNB) tends to accumulate in industrial effluents because of its recalcitrant properties. Approaches to the removal of p-FNB always encounter conflicts between treatment efficiency and economic efficiency. A bioelectrochemical system (BES) was established to facilitate the removal and mineralization of p-FNB. The treatment cost was reduced by using inexpensive electrode materials and reducing the electrical energy used. p-FNB was effectively removed using the BES, and the reaction rate was higher than the sum of the rates of two control systems, i.e., a biological system (BS) and an electrocatalytic system (ECS), by a maximum of 62.9% under a voltage of 1.4 V. The voltage is a crucial kinetic factor for the BES performance; as the voltage increased from 0 to 1.4 V, the reaction rate constants for p-FNB removal and defluorination increased from 0.0520 to 0.1811 h(-1) and 0 to 0.0107 h(-1). The synergistic effect of multistrains gave a TOC removal efficiency in the BES of about 34.05%, yet the removal efficiencies were low for the two control. The defluorination reaction rate was significantly slower than the p-FNB removal rate, which indicated that defluorination lagged p-FNB removal, and p-FNB transformation to p-fluoroaniline (p-FA) was the fastest step. The electrochemical assistance provided electrons and accelerated the electron transfer rate in the microbial reduction of p-FNB to p-FA. In this study, the critical voltage for defluorination in the BES was 0.8 V, which was approximately 0.2 V lower than that in the ECS. The decrease in the critical voltage for defluorination was based on the production of p-FA, which is more electrocatalytically activated. These results demonstrate the mechanism of efficient p-FNB removal and mineralization in a BES.
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Affiliation(s)
- Huajun Feng
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou 310012, China
| | - Xueqin Zhang
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou 310012, China
| | - Yuxiang Liang
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou 310012, China
| | - Meizhen Wang
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou 310012, China
| | - Dongsheng Shen
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou 310012, China
| | - Yangcheng Ding
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou 310012, China
| | - Baocheng Huang
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou 310012, China
| | - Jiali Shentu
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou 310012, China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou 310012, China.
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15
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Zhao Z, Feng Y, Feng H, Ghulam A, Su Y, Shen D. Anaerobic biotransformation of fluoronitrobenzenes and microbial communities in methanogenic systems. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART A, TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING 2014; 49:1187-1197. [PMID: 24844900 DOI: 10.1080/10934529.2014.897537] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The fluorinated compounds are becoming a ubiquitous class of environmental contaminants because of their widespread applications, and their fate is a matter of great concern under anaerobic environment. In this work, the biotransformation of five fluoronitrobenzenes (FNBs), i.e., 2-fluoronitrobenzene (2-FNB), 3-fluoronitrobenzene (3-FNB), 4-fluoronitrobenzene (4-FNB), 2,4-difluoronitrobenzene (2,4-DFNB), and 2,3,4-trifluoronitrobenzene (2,3,4-TFNB), under methanogenic conditions had been studied by semicontinuous and batch tests for the first time. In 245 days, the five FNBs except 3-FNB were transformed mainly via nitro-reduction, and the reductive defluorination was not observed. During the biotransformation of 3-FNB, the reductive defluorination occurred after 98 days; however, its product was not aniline. The maximum transformation rates of 2-FNB, 3-FNB, 4-FNB, 2,4-DFNB, and 2,3,4-TFNB were 21.21 ± 1.73, 32.14 ± 2.33, 21.33 ± 2.48, 33.89 ± 6.87, and 10.87 ± 0.84 mg FNB (g VSS h)(-1), respectively. With the increase in the number of the fluorous groups, the transformation rates did not increase. Besides, the microbial communities were characterized by means of denaturing gradient gel electrophoresis (DGGE). Results showed that the predominant archaea were Methanobacterium, Methanosphaerula, Methanofollis, Methanospirillum, Methanolinea, and Methanosaeta; the predominant bacteria were Sphingbacteriales, Flavobacteriales, bacteroidales, Deltaproteobacteria, Desulfovibrionales, Clostridates, and Pseudomonadates. Few bacteria found were with high similarity to dechlorinating microorganisms reported. The results demonstrated that the pathways of FNBs biotransformation were different from those of the chloronitrobenzenes under methanogenic conditions.
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Affiliation(s)
- Zhiqing Zhao
- a College of Environment & Resource Sciences , Zhejiang University , Hangzhou , P. R. China
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16
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Kuntze K, Kiefer P, Baumann S, Seifert J, von Bergen M, Vorholt JA, Boll M. Enzymes involved in the anaerobic degradation of meta-substituted halobenzoates. Mol Microbiol 2012; 82:758-69. [PMID: 22010634 DOI: 10.1111/j.1365-2958.2011.07856.x] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Organohalides are environmentally relevant compounds that can be degraded by aerobic and anaerobic microorganisms. The denitrifying Thauera chlorobenzoica is capable of degrading halobenzoates as sole carbon and energy source under anaerobic conditions. LC-MS/MS-based coenzyme A (CoA) thioester analysis revealed that 3-chloro- or 3-bromobenzoate were preferentially metabolized via non-halogenated CoA-ester intermediates of the benzoyl-CoA degradation pathway. In contrast, 3-fluorobenzoate, which does not support growth, was converted to dearomatized fluorinated CoA ester dead-end products. Extracts from cells grown on 3-chloro-/3-bromobenzoate catalysed the Ti(III)-citrate- and ATP-dependent reductive dehalogenation of 3-chloro/3-bromobenzoyl-CoA to benzoyl-CoA, whereas 3-fluorobenzoyl-CoA was converted to a fluorinated cyclic dienoyl-CoA compound. The reductive dehalogenation reactions were identified as previously unknown activities of ATP-dependent class I benzoyl-CoA reductases (BCR) present in all facultatively anaerobic, aromatic compound degrading bacteria. A two-step dearomatization/H-halide elimination mechanism is proposed. A halobenzoate-specific carboxylic acid CoA ligase was characterized in T. chlorobenzoica; however, no such enzyme is present in Thauera aromatica, which cannot grow on halobenzoates. In conclusion, it appears that the presence of a halobenzoate-specific carboxylic acid CoA ligase rather than a specific reductive dehalogenase governs whether an aromatic compound degrading anaerobe is capable of metabolizing halobenzoates.
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Affiliation(s)
- Kevin Kuntze
- Institute of Biochemistry, University of Leipzig, Leipzig, Germany
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17
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Abstract
Investigations on diverse aspects of fluoro-organic compounds have rapidly increased during the past decades. Because natural sources of fluoro-organic compounds are extremely rare, the industrial synthesis of fluorinated organic compounds and production of fluorinated natural product derivatives have greatly expanded in recent years because of their increasing importance in the agrochemical and pharmaceutical industries. Due to structural complexity or instability, synthetic modification is often not possible, and various biofluorination strategies have been developed in recent years for applications in the anti-cancer, anti-viral and anti-infection fields. Despite the industrial importance of fluorinated compounds, there have been serious concerns worldwide over the levels and synthetic routes of certain fluorinated organic compounds, in particular perfluorinated chemicals (PFCs). PFCs are emerging and recalcitrant pollutants which are widely distributed in the environment and have been detected in humans and wildlife globally. PFCs have been demonstrated to be potentially carcinogenic, adversely affect the neuroendocrine and immune systems, and produce neurotoxicity, heptatotoxicity and endocrine disrupting effects in vertebrate animals. Here, we provide an overview of recent advances in our understanding of the biology of various fluoro-organic compounds and perspectives for new enzymes and metabolic pathways for bioremediation of these chemicals.
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Affiliation(s)
- Xiao-Jian Zhang
- Department of Biology and Chemistry, City University of Hong Kong, Kowloon Tong, Hong Kong
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19
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Murphy CD. Biodegradation and biotransformation of organofluorine compounds. Biotechnol Lett 2009; 32:351-9. [DOI: 10.1007/s10529-009-0174-3] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2009] [Revised: 11/06/2009] [Accepted: 11/09/2009] [Indexed: 10/20/2022]
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20
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Metabolism of fluoroorganic compounds in microorganisms: impacts for the environment and the production of fine chemicals. Appl Microbiol Biotechnol 2009; 84:617-29. [PMID: 19629474 DOI: 10.1007/s00253-009-2127-0] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2009] [Revised: 07/02/2009] [Accepted: 07/02/2009] [Indexed: 10/20/2022]
Abstract
Incorporation of fluorine into an organic compound can favourably alter its physicochemical properties with respect to biological activity, stability and lipophilicity. Accordingly, this element is found in many pharmaceutical and industrial chemicals. Organofluorine compounds are accepted as substrates by many enzymes, and the interactions of microorganisms with these compounds are of relevance to the environment and the fine chemicals industry. On the one hand, the microbial transformation of organofluorines can lead to the generation of toxic compounds that are of environmental concern, yet similar biotransformations can yield difficult-to-synthesise products and intermediates, in particular derivatives of biologically active secondary metabolites. In this paper, we review the historical and recent developments of organofluorine biotransformation in microorganisms and highlight the possibility of using microbes as models of fluorinated drug metabolism in mammals.
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Iwai N, Sakai R, Tsuchida S, Kitazume M, Kitazume T. Screening of fluorinated materials degrading microbes. J Fluor Chem 2009. [DOI: 10.1016/j.jfluchem.2009.02.004] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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22
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Parsons JR, Sáez M, Dolfing J, de Voogt P. Biodegradation of perfluorinated compounds. REVIEWS OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2008; 196:53-71. [PMID: 19025092 DOI: 10.1007/978-0-387-78444-1_2] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
The information available in the literature provides evidence for the biodegradation of some poly- and per-fluorinated compounds, but such biodegradation is incomplete and may not result in mineralization. Recent publications have demonstrated that 8:2 fluorotelomer alcohol, for example, can be degraded by bacteria from soil and wastewater treatment plants to perfluorooctanoic acid. Similarly, 2-N-ethyl(perfluorooctane sulfonamido)ethanol can be degraded by wastewater treatment sludge to perfluorooctanesulfonate. It is presently unclear whether these two products are degraded further. Therefore, the question remains as to whether there is a potential for defluorination and biodegradation of PFCs that contributes significantly to their environmental fate. The lack of mineralization observed is probably caused by the stability of the C-F bond, although there are examples of microbially catalyzed defluorination reactions. As is the case with reductive dechlorination or debromination, reductive defluorination is energetically favorable under anaerobic conditions and releases more energy than that available from sulfate reduction or methanogenesis. Consequently, we should consider the possibility that bacteria will adapt to utilize this source of energy, although evolving mechanisms to overcome the kinetic barriers to degradation of these compounds may take some time. The fact that such reactions are absent for some PFCs, to date, may be because too little time has passed for microorganisms to adapt to these potential substrates. Hence, the situation may be comparable to that of chlorinated organic compounds several decades ago. For many years, organochlorine compounds were considered to be catabolically recalcitrant; today, reductive chlorination reactions of many organochlorines, including PCBs and dioxins, are regularly observed in anaerobic environments. Hence, it is opportune and important to continue studying the potential degradation of perfluorinated compounds in carefully designed experiments with either microbial populations from contaminated sites or cultures of bacteria known to dehalogenate chlorinated compounds.
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Affiliation(s)
- John R Parsons
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Nieuwe Achtergracht 166, 1018 WV Amsterdam, The Netherlands
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23
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Emanuelsson MAE, Osuna MB, Sipma J, Castro PML. Treatment of halogenated organic compounds and monitoring of microbial dynamics in up-flow fixed bed reactors under sequentially alternating pollutant scenarios. Biotechnol Bioeng 2008; 99:800-10. [PMID: 17722081 DOI: 10.1002/bit.21630] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Two up-flow fixed bed reactors (UFBR) were operated for 8 months treating a model synthetic wastewater containing 2-fluorobenzoate (2-FB) and dichloromethane (DCM). The stability of the reactors under dynamic conditions, that is, sequentially alternating pollutants (SAP), shock loads, and starvation periods was assessed. Two support materials were used: expanded clay (EC) that does not adsorb 2-FB or DCM, and granular-activated carbon (GAC) that adsorbs 180 mg g(-1) of 2-FB and 390 mg g(-1) of DCM. The reactors were inoculated with a 2-FB-degrading strain (FB2) and a DCM degrader (TM1). 2-FB was fed at organic loads ranging from 0 to 800 mg L(-1) d(-1), while DCM was fed at 0-250 mg L(-1) d(-1). 2-FB or DCM were never detected at the outlet of the GAC reactor, while in the EC reactor outlet small amounts were observed. Nevertheless, the highest biological elimination capacity was observed in the EC reactor (over 700 mg L(-1) d(-1) of 2-FB). DGGE analysis revealed a fairly stable bacterial community with the largest shifts occurring during starvation periods and changes in feed composition. Several bacterial strains isolated from the reactors showed capacity for 2-FB degradation, while only strain TM1 degraded DCM.
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Affiliation(s)
- Maria A E Emanuelsson
- Escola Superior de Biotecnologia, Universidade Católica Portuguesa, Rua Dr. António Bernardino de Almeida, 4200-072 Porto, Portugal
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24
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Carvalho MF, Ferreira Jorge R, Pacheco CC, De Marco P, Henriques IS, Correia A, Castro PML. Long-term performance and microbial dynamics of an up-flow fixed bed reactor established for the biodegradation of fluorobenzene. Appl Microbiol Biotechnol 2006; 71:555-62. [PMID: 16240116 DOI: 10.1007/s00253-005-0175-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2005] [Revised: 08/15/2005] [Accepted: 09/02/2005] [Indexed: 11/30/2022]
Abstract
An up-flow fixed bed reactor (UFBR) was established to investigate the biodegradation of fluorobenzene (FB) under a number of operating conditions, which included variation in the concentration of FB in the feed stream (up to 180 mg l(-1)) and temporary suspension of feeding. Degradation of FB was followed for a period of 8 months under a continuous flow regime. During the operation of the UFBR, FB was never detected in the reactor effluent, being biodegraded by the microbial biofilm or adsorbed to the granular activated carbon (GAC). Biodegradation of FB was observed from the beginning of the reactor operation, and overall, it accounted for 50% of the total amount fed to the bioreactor. High organic loads of FB (210-260 mg d(-1) dm(-3)) were found to affect the biological removal efficiency, possibly due to an inhibitory effect caused by the higher FB concentrations fed to the bioreactor (149-179 mg l(-1)). When FB feeding was suspended for 1 month, biodegradation continued, indicating that the adsorbed FB became bioavailable. Biofilm bacterial dynamics were followed throughout the UFBR operation by denaturing gradient gel electrophoresis and plate-counting techniques, showing that a quite stable community was found in the bioreactor, and this was mainly attributed to the high selective pressure exerted by the presence of FB.
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Affiliation(s)
- M F Carvalho
- Escola Superior de Biotecnologia, Universidade Católica Portuguesa, Rua Dr. António Bernardino de Almeida, 4200-072, Porto, Portugal
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25
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Lalucat J, Bennasar A, Bosch R, García-Valdés E, Palleroni NJ. Biology of Pseudomonas stutzeri. Microbiol Mol Biol Rev 2006; 70:510-47. [PMID: 16760312 PMCID: PMC1489536 DOI: 10.1128/mmbr.00047-05] [Citation(s) in RCA: 324] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
Pseudomonas stutzeri is a nonfluorescent denitrifying bacterium widely distributed in the environment, and it has also been isolated as an opportunistic pathogen from humans. Over the past 15 years, much progress has been made in elucidating the taxonomy of this diverse taxonomical group, demonstrating the clonality of its populations. The species has received much attention because of its particular metabolic properties: it has been proposed as a model organism for denitrification studies; many strains have natural transformation properties, making it relevant for study of the transfer of genes in the environment; several strains are able to fix dinitrogen; and others participate in the degradation of pollutants or interact with toxic metals. This review considers the history of the discovery, nomenclatural changes, and early studies, together with the relevant biological and ecological properties, of P. stutzeri.
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Affiliation(s)
- Jorge Lalucat
- Department de Biologia, Microbiologia, Universitat de les Illes Balears, 07122 Palma de Mallorca, Spain.
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26
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27
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Carvalho MF, Ferreira Jorge R, Pacheco CC, De Marco P, Castro PML. Isolation and properties of a pure bacterial strain capable of fluorobenzene degradation as sole carbon and energy source. Environ Microbiol 2005; 7:294-8. [PMID: 15658996 DOI: 10.1111/j.1462-2920.2004.00714.x] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A pure bacterial strain capable of aerobic biodegradation of fluorobenzene (FB) as the sole carbon and energy source was isolated by selective enrichment from sediments collected from a polluted site. 16S rRNA and fatty acid analyses support that strain F11 belongs to a novel genus within the alpha-2 subgroup of the Proteobacteria, possibly within a new clade related to the order Rhizobiales. In batch cultures, growth of strain F11 on FB led to stoichiometric release of fluoride ion. Maximum experimental growth rate of 0.04 h-1 was obtained at FB concentration of 0.4 mM. Growth kinetics were described by the Luong model. An inhibitory effect with increasing FB concentrations was observed, with no growth occurring at concentrations higher than 3.9 mM. Strain F11 was shown to be able to use a range of other organic compounds, including other fluorinated compounds such as 2-fluorobenzoate, 4-fluorobenzoate and 4-fluorophenol. To our knowledge, this is the first time biodegradation of FB, as the sole carbon and energy source, by a pure bacterium has been reported.
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MESH Headings
- Aerobiosis
- Alphaproteobacteria/classification
- Alphaproteobacteria/drug effects
- Alphaproteobacteria/isolation & purification
- Alphaproteobacteria/physiology
- Anti-Bacterial Agents/metabolism
- Anti-Bacterial Agents/pharmacology
- Benzoates/metabolism
- Biodegradation, Environmental
- DNA, Bacterial/chemistry
- DNA, Bacterial/isolation & purification
- DNA, Ribosomal/chemistry
- DNA, Ribosomal/isolation & purification
- Fluorides/metabolism
- Fluorobenzenes/metabolism
- Fluorobenzenes/pharmacology
- Genes, rRNA
- Geologic Sediments/microbiology
- Molecular Sequence Data
- Phenols/metabolism
- Phylogeny
- Portugal
- RNA, Bacterial/genetics
- RNA, Ribosomal, 16S/genetics
- Sequence Analysis, DNA
- Soil Microbiology
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Affiliation(s)
- M F Carvalho
- Escola Superior de Biotecnologia, Universidade Católica Portuguesa, Rua Dr António Bernardino de Almeida, 4200-072 Porto, Portugal
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28
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Zhang C, Bennett GN. Biodegradation of xenobiotics by anaerobic bacteria. Appl Microbiol Biotechnol 2005; 67:600-18. [PMID: 15672270 DOI: 10.1007/s00253-004-1864-3] [Citation(s) in RCA: 74] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2004] [Revised: 11/29/2004] [Accepted: 11/30/2004] [Indexed: 10/25/2022]
Abstract
Xenobiotic biodegradation under anaerobic conditions such as in groundwater, sediment, landfill, sludge digesters and bioreactors has gained increasing attention over the last two decades. This review gives a broad overview of our current understanding of and recent advances in anaerobic biodegradation of five selected groups of xenobiotic compounds (petroleum hydrocarbons and fuel additives, nitroaromatic compounds and explosives, chlorinated aliphatic and aromatic compounds, pesticides, and surfactants). Significant advances have been made toward the isolation of bacterial cultures, elucidation of biochemical mechanisms, and laboratory and field scale applications for xenobiotic removal. For certain highly chlorinated hydrocarbons (e.g., tetrachlorethylene), anaerobic processes cannot be easily substituted with current aerobic processes. For petroleum hydrocarbons, although aerobic processes are generally used, anaerobic biodegradation is significant under certain circumstances (e.g., O(2)-depleted aquifers, oil spilled in marshes). For persistent compounds including polychlorinated biphenyls, dioxins, and DDT, anaerobic processes are slow for remedial application, but can be a significant long-term avenue for natural attenuation. In some cases, a sequential anaerobic-aerobic strategy is needed for total destruction of xenobiotic compounds. Several points for future research are also presented in this review.
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Affiliation(s)
- Chunlong Zhang
- Department of Environmental Sciences, University of Houston-Clear Lake, Houston, TX 77058, USA
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29
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Song B, Ward BB. Nitrite reductase genes in halobenzoate degrading denitrifying bacteria. FEMS Microbiol Ecol 2003; 43:349-57. [DOI: 10.1111/j.1574-6941.2003.tb01075.x] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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30
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Häggblom MM, Ahn YB, Fennell DE, Kerkhof LJ, Rhee SK. Anaerobic Dehalogenation of Organohalide Contaminants in the Marine Environment. ADVANCES IN APPLIED MICROBIOLOGY 2003; 53:61-84. [PMID: 14696316 DOI: 10.1016/s0065-2164(03)53002-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
Microbially mediated dehalogenation processes contribute to the global cycling of both biogenic and anthropogenic halogenated organic compounds. Detailed information on biodegradation mechanisms for a variety of organohalides and on the microorganisms mediating these processes has greatly increased our understanding of the cycling and fate of these unique and widespread compounds in our environment. The marine environment appears to be a particularly rich source of dehalogenating microorganisms. It is well established by laboratory and field studies that anaerobic dehalogenation of sediment contaminants, such as PCBs, pesticides, and dioxins, occurs intrinsically and can be enhanced via various methods. Specific dehalogenating bacterial populations can be enriched on various organohalides. Biodehalogenation processes are likely to be significantly affected by the prevailing terminal electron-accepting condition, and thus, biotransformation of organohalide contaminants in marine and estuarine environments will vary as a function of the redox conditions within the sediment profile. Fundamental knowledge of the activities and interactions of dehalogenating microorganisms is providing a strong basis for development of new bioremediation technologies for removal of harmful halogenated compounds from our environment.
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Affiliation(s)
- Max M Häggblom
- Department of Biochemistry and Microbiology & Biotechnology Center for Agriculture and the Environment, State University of New Jersey, New Brunswick, New Jersey 08901, USA
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31
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Biodegradation studies of 4-fluorobenzoic acid and 4-fluorocinnamic acid: an evaluation of membrane inlet mass spectrometry as an alternative to high performance liquid chromatography and ion chromatography. Anal Chim Acta 2002. [DOI: 10.1016/s0003-2670(01)01514-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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32
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Carvalho MF, Alves CCT, Ferreira MIM, De Marco P, Castro PML. Isolation and initial characterization of a bacterial consortium able to mineralize fluorobenzene. Appl Environ Microbiol 2002; 68:102-5. [PMID: 11772615 PMCID: PMC126581 DOI: 10.1128/aem.68.1.102-105.2002] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Fluorinated compounds are known to be more resistant to microbial degradation than other halogenated chemicals. A microbial consortium capable of aerobic biodegradation of fluorobenzene (FB) as the sole source of carbon and energy was isolated by selective enrichment from sediments collected in a drain near an industrial site. A combination of three microbial strains recovered from the enriched consortium was shown to be necessary for complete FB mineralization. Two of the strains (F1 and F3) were classified by 16S rRNA analysis as belonging to the Sphingobacterium/Flavobacterium group, while the third (F4) falls in the beta-Proteobacteria group, clustering with Alcaligenes species. Strain F4 was consistently found in the liquid cultures in a much greater proportion than strains F1 and F3 (86:8:6 for F4, F1, and F3, respectively). Stoichiometric release of fluoride ions was measured in batch and fed-batch cultures. In batch cultures, the consortium was able to use FB up to concentrations of 400 mg liter(-1) and was able to utilize a range of other organic compounds, including 4-fluorophenol and 4-fluorobenzoate. To our knowledge this is the first time biodegradation of FB as a sole carbon source has been reported.
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Affiliation(s)
- M F Carvalho
- Escola Superior de Biotecnologia, Universidade Católica Portuguesa, 4200-072 Porto, Portugal
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33
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Song B, Palleroni NJ, Häggblom MM. Isolation and characterization of diverse halobenzoate-degrading denitrifying bacteria from soils and sediments. Appl Environ Microbiol 2000; 66:3446-53. [PMID: 10919805 PMCID: PMC92169 DOI: 10.1128/aem.66.8.3446-3453.2000] [Citation(s) in RCA: 136] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Denitrifying bacteria capable of degrading halobenzoates were isolated from various geographical and ecological sites. The strains were isolated after initial enrichment on one of the monofluoro-, monochloro-, or monobromo-benzoate isomers with nitrate as an electron acceptor, yielding a total of 33 strains isolated from the different halobenzoate-utilizing enrichment cultures. Each isolate could grow on the selected halobenzoate with nitrate as the terminal electron acceptor. The isolates obtained on 2-fluorobenzoate could use 2-fluorobenzoate under both aerobic and denitrifying conditions, but did not degrade other halobenzoates. In contrast, the 4-fluorobenzoate isolates degraded 4-fluorobenzoate under denitrifying conditions only, but utilized 2-fluorobenzoate under both aerobic and denitrifying conditions. The strains isolated on either 3-chlorobenzoate or 3-bromobenzoate could use 3-chlorobenzoate, 3-bromobenzoate, and 2- and 4-fluorobenzoates under denitrifying conditions. The isolates were identified and classified on the basis of 16S rRNA gene sequence analysis and their cellular fatty acid profiles. They were placed in nine genera belonging to either the alpha-, beta-, or gamma-branch of the Proteobacteria, namely, Acidovorax, Azoarcus, Bradyrhizobium, Ochrobactrum, Paracoccus, Pseudomonas, Mesorhizobium, Ensifer, and Thauera. These results indicate that the ability to utilize different halobenzoates under denitrifying conditions is ubiquitously distributed in the Proteobacteria and that these bacteria are widely distributed in soils and sediments.
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Affiliation(s)
- B Song
- Department of Biochemistry and Microbiology and Biotechnology Center for Agriculture and the Environment, Cook College, Rutgers University, New Brunswick, NJ 08901-8525, USA
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