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Hoosein S, Neuenkamp L, Trivedi P, Paschke MW. AM fungal-bacterial relationships: what can they tell us about ecosystem sustainability and soil functioning? FRONTIERS IN FUNGAL BIOLOGY 2023; 4:1141963. [PMID: 37746131 PMCID: PMC10512368 DOI: 10.3389/ffunb.2023.1141963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Accepted: 07/05/2023] [Indexed: 09/26/2023]
Abstract
Considering our growing population and our continuous degradation of soil environments, understanding the fundamental ecology of soil biota and plant microbiomes will be imperative to sustaining soil systems. Arbuscular mycorrhizal (AM) fungi extend their hyphae beyond plant root zones, creating microhabitats with bacterial symbionts for nutrient acquisition through a tripartite symbiotic relationship along with plants. Nonetheless, it is unclear what drives these AM fungal-bacterial relationships and how AM fungal functional traits contribute to these relationships. By delving into the literature, we look at the drivers and complexity behind AM fungal-bacterial relationships, describe the shift needed in AM fungal research towards the inclusion of interdisciplinary tools, and discuss the utilization of bacterial datasets to provide contextual evidence behind these complex relationships, bringing insights and new hypotheses to AM fungal functional traits. From this synthesis, we gather that interdependent microbial relationships are at the foundation of understanding microbiome functionality and deciphering microbial functional traits. We suggest using pattern-based inference tools along with machine learning to elucidate AM fungal-bacterial relationship trends, along with the utilization of synthetic communities, functional gene analyses, and metabolomics to understand how AM fungal and bacterial communities facilitate communication for the survival of host plant communities. These suggestions could result in improving microbial inocula and products, as well as a better understanding of complex relationships in terrestrial ecosystems that contribute to plant-soil feedbacks.
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Affiliation(s)
- Shabana Hoosein
- Department of Forest and Rangeland Stewardship/Graduate Degree Program in Ecology, Colorado State University, Fort Collins, CO, United States
| | - Lena Neuenkamp
- Institute of Landscape Ecology, Münster University, Münster, Germany
- Department of Ecology and Multidisciplinary Institute for Environment Studies “Ramon Margalef,” University of Alicante, Alicante, Spain
| | - Pankaj Trivedi
- Microbiome Network, Department of Agricultural Biology, Graduate Degree Program in Ecology, Colorado State University, Fort Collins, CO, United States
| | - Mark W. Paschke
- Department of Forest and Rangeland Stewardship/Graduate Degree Program in Ecology, Colorado State University, Fort Collins, CO, United States
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Ryabova OV, Gagarina AA. Actinomycetes as the Basis of Probiotics for Plants. APPL BIOCHEM MICRO+ 2022. [DOI: 10.1134/s0003683822070055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Saharan BS, Brar B, Duhan JS, Kumar R, Marwaha S, Rajput VD, Minkina T. Molecular and Physiological Mechanisms to Mitigate Abiotic Stress Conditions in Plants. Life (Basel) 2022; 12:1634. [PMID: 36295069 PMCID: PMC9605384 DOI: 10.3390/life12101634] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 10/14/2022] [Accepted: 10/15/2022] [Indexed: 10/03/2023] Open
Abstract
Agriculture production faces many abiotic stresses, mainly drought, salinity, low and high temperature. These abiotic stresses inhibit plants' genetic potential, which is the cause of huge reduction in crop productivity, decrease potent yields for important crop plants by more than 50% and imbalance agriculture's sustainability. They lead to changes in the physio-morphological, molecular, and biochemical nature of the plants and change plants' regular metabolism, which makes them a leading cause of losses in crop productivity. These changes in plant systems also help to mitigate abiotic stress conditions. To initiate the signal during stress conditions, sensor molecules of the plant perceive the stress signal from the outside and commence a signaling cascade to send a message and stimulate nuclear transcription factors to provoke specific gene expression. To mitigate the abiotic stress, plants contain several methods of avoidance, adaption, and acclimation. In addition to these, to manage stress conditions, plants possess several tolerance mechanisms which involve ion transporters, osmoprotectants, proteins, and other factors associated with transcriptional control, and signaling cascades are stimulated to offset abiotic stress-associated biochemical and molecular changes. Plant growth and survival depends on the ability to respond to the stress stimulus, produce the signal, and start suitable biochemical and physiological changes. Various important factors, such as the biochemical, physiological, and molecular mechanisms of plants, including the use of microbiomes and nanotechnology to combat abiotic stresses, are highlighted in this article.
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Affiliation(s)
- Baljeet Singh Saharan
- Department of Microbiology, CCS Haryana Agricultural University, Hisar 125004, India
| | - Basanti Brar
- Department of Microbiology, CCS Haryana Agricultural University, Hisar 125004, India
| | | | - Ravinder Kumar
- Department of Biotechnology, Ch. Devi Lal University, Sirsa 125055, India
| | - Sumnil Marwaha
- ICAR-National Research Centre on Camel, Bikaner 334001, India
| | - Vishnu D. Rajput
- Academy of Biology and Biotechnology, Southern Federal University, 344090 Rostov-on-Don, Russia
| | - Tatiana Minkina
- Academy of Biology and Biotechnology, Southern Federal University, 344090 Rostov-on-Don, Russia
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Rui W, Mao Z, Li Z. The Roles of Phosphorus and Nitrogen Nutrient Transporters in the Arbuscular Mycorrhizal Symbiosis. Int J Mol Sci 2022; 23:ijms231911027. [PMID: 36232323 PMCID: PMC9570102 DOI: 10.3390/ijms231911027] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Revised: 09/08/2022] [Accepted: 09/16/2022] [Indexed: 11/16/2022] Open
Abstract
More than 80% of land plant species can form symbioses with arbuscular mycorrhizal (AM) fungi, and nutrient transfer to plants is largely mediated through this partnership. Over the last few years, great progress has been made in deciphering the molecular mechanisms underlying the AM-mediated modulation of nutrient uptake progress, and a growing number of fungal and plant genes responsible for the uptake of nutrients from soil or transfer across the fungal–root interface have been identified. In this review, we outline the current concepts of nutrient exchanges within this symbiosis (mechanisms and regulation) and focus on P and N transfer from the fungal partner to the host plant, with a highlight on a possible interplay between P and N nutrient exchanges. Transporters belonging to the plant or AM fungi can synergistically process the transmembrane transport of soil nutrients to the symbiotic interface for further plant acquisition. Although much progress has been made to elucidate the complex mechanism for the integrated roles of nutrient transfers in AM symbiosis, questions still remain to be answered; for example, P and N transporters are less studied in different species of AM fungi; the involvement of AM fungi in plant N uptake is not as clearly defined as that of P; coordinated utilization of N and P is unknown; transporters of cultivated plants inoculated with AM fungi and transcriptomic and metabolomic networks at both the soil–fungi interface and fungi–plant interface have been insufficiently studied. These findings open new perspectives for fundamental research and application of AM fungi in agriculture.
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Abiotic Stress and Belowground Microbiome: The Potential of Omics Approaches. Int J Mol Sci 2022; 23:ijms23031091. [PMID: 35163015 PMCID: PMC8835006 DOI: 10.3390/ijms23031091] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 01/11/2022] [Accepted: 01/17/2022] [Indexed: 02/06/2023] Open
Abstract
Nowadays, the worldwide agriculture is experiencing a transition process toward more sustainable production, which requires the reduction of chemical inputs and the preservation of microbiomes’ richness and biodiversity. Plants are no longer considered as standalone entities, and the future of agriculture should be grounded on the study of plant-associated microorganisms and all their potentiality. Moreover, due to the climate change scenario and the resulting rising incidence of abiotic stresses, an innovative and environmentally friendly technique in agroecosystem management is required to support plants in facing hostile environments. Plant-associated microorganisms have shown a great attitude as a promising tool to improve agriculture sustainability and to deal with harsh environments. Several studies were carried out in recent years looking for some beneficial plant-associated microbes and, on the basis of them, it is evident that Actinomycetes and arbuscular mycorrhizal fungi (AMF) have shown a considerable number of positive effects on plants’ fitness and health. Given the potential of these microorganisms and the effects of climate change, this review will be focused on their ability to support the plant during the interaction with abiotic stresses and on multi-omics techniques which can support researchers in unearthing the hidden world of plant–microbiome interactions. These associated microorganisms can increase plants’ endurance of abiotic stresses through several mechanisms, such as growth-promoting traits or priming-mediated stress tolerance. Using a multi-omics approach, it will be possible to deepen these mechanisms and the dynamic of belowground microbiomes, gaining fundamental information to exploit them as staunch allies and innovative weapons against crop abiotic enemies threatening crops in the ongoing global climate change context.
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Ren W, Guo Y, Han X, Sun Y, Li Q, Wu B, Xia T, Shen K, Wu P, He Y. Indigenous Microorganisms Offset Arbuscular Mycorrhizal Fungi-Induced Plant Growth and Nutrient Acquisition Through Negatively Modulating the Genes of Phosphorus Transport and Nitrogen Assimilation. FRONTIERS IN PLANT SCIENCE 2022; 13:880181. [PMID: 35615141 PMCID: PMC9125159 DOI: 10.3389/fpls.2022.880181] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 03/18/2022] [Indexed: 05/06/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi that promote plant growth and nutrient acquisition are essential for nutrient-deficient karst areas, while they inevitably regulate host plants jointly with indigenous microorganisms in natural soil. However, how indigenous microorganisms regulate AM-induced benefits on plant growth and nutrient acquisition remains unclear. In this study, the Bidens tripartita as the common plant species in the karst region was cultivated into three soil substrates treated by AM fungi inoculation (AMF), AM fungi inoculation combining with indigenous microorganisms (AMI), and the control without AM fungi and indigenous microorganisms (CK). The plant biomass and concentration of nitrogen (N) and phosphorus (P) were measured, and the transcriptomic analysis was carried out using root tissues. The results showed that AM fungi significantly enhanced the plant biomass, N, and P accumulation with the reduction of plants' N/P ratio; however, the indigenous microorganisms offset the AM-induced benefits in biomass and N and P acquisition. In addition, there are 819 genes in differentially expressed genes (DEGs) of AMF vs. AMI ∩ AMF vs. CK, meaning that AM fungi induced these genes that were simultaneously regulated by indigenous microorganisms. Furthermore, the enrichment analysis suggested that these genes were significantly associated with the metabolic processes of organophosphate, P, sulfur, N, and arginine biosynthesis. Notably, 34 and 17 genes of DEGs were related to P and N metabolism, respectively. Moreover, the indigenous microorganisms significantly downregulated these DEGs, especially those encoding the PHO1 P transporters and the glnA, glutamate dehydrogenase 2 (GDH2), and urease as key enzymes in N assimilation; however, the indigenous microorganisms significantly upregulated genes encoding PHO84 inducing cellular response to phosphate (Pi) starvation. These regulations indicated that indigenous microorganisms restrained the N and P metabolism induced by AM fungi. In conclusion, we suggested that indigenous microorganisms offset nutrient benefits of AM fungi for host plants through regulating these genes related to P transport and N assimilation.
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Affiliation(s)
- Wenda Ren
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Yun Guo
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Xu Han
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Yan Sun
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Qing Li
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Bangli Wu
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Tingting Xia
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Kaiping Shen
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Pan Wu
- Key Laboratory of Karst Georesources and Environment, Ministry of Education, Guizhou University, Guiyang, China
| | - Yuejun He
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
- *Correspondence: Yuejun He,
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Torres N, Yu R, Martínez-Lüscher J, Kostaki E, Kurtural SK. Effects of Irrigation at Different Fractions of Crop Evapotranspiration on Water Productivity and Flavonoid Composition of Cabernet Sauvignon Grapevine. FRONTIERS IN PLANT SCIENCE 2021; 12:712622. [PMID: 34539704 PMCID: PMC8440997 DOI: 10.3389/fpls.2021.712622] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Accepted: 08/06/2021] [Indexed: 05/31/2023]
Abstract
Climate change models predict lower precipitation and higher air temperatures that will negatively affect viticultural regions. Irrigation of vineyards will be crucial for mitigating abiotic stress during the growing season. However, the environmental impact of irrigation requires consideration for ensuring its sustainability in the future. We evaluated the standard irrigation practices on grapevine water use efficiency, berry flavonoid composition, vineyard water footprint, and arbuscular mycorrhizal fungi-grapevine symbiosis in two seasons with contrasting amounts of precipitation. The irrigation treatments consisted of weekly replacement of 25, 50, and 100% of crop evapotranspiration (ETc) during two growing seasons. Irrigation in grapevine vineyards mitigated the water scarcity when precipitation during the dormant season was not sufficient. The results provided field data supporting that despite the low rainfall recorded in one of the seasons, increasing the amount of irrigation was not advised, and replacing 50% ETc was sufficient. In this treatment, berry composition was improved with increased contents of total soluble solids, anthocyanins, and flavonols, and a stable flavonoid profile without an economic decrease in yield. In addition, with 50% ETc, the mycorrhizal symbiosis was not compromised and water resources were not highly impacted. Altogether, our results provide fundamental knowledge for viticulturists to design an appropriate irrigation schedule under the future warming scenarios with minimal environmental impact in semi-arid regions facing warming trends.
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Affiliation(s)
- Nazareth Torres
- Department of Viticulture and Enology, University of California, Davis, Davis, CA, United States
- Department of Agronomy, Biotechnology and Food Science, Public University of Navarra, Pamplona, Spain
| | - Runze Yu
- Department of Viticulture and Enology, University of California, Davis, Davis, CA, United States
| | - Johann Martínez-Lüscher
- Department of Viticulture and Enology, University of California, Davis, Davis, CA, United States
- Semios Biotechnologies Toronto, Toronto, ON, Canada
| | - Evmorfia Kostaki
- Department of Viticulture and Enology, University of California, Davis, Davis, CA, United States
| | - Sahap Kaan Kurtural
- Department of Viticulture and Enology, University of California, Davis, Davis, CA, United States
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Goddard ML, Belval L, Martin IR, Roth L, Laloue H, Deglène-Benbrahim L, Valat L, Bertsch C, Chong J. Arbuscular Mycorrhizal Symbiosis Triggers Major Changes in Primary Metabolism Together With Modification of Defense Responses and Signaling in Both Roots and Leaves of Vitis vinifera. FRONTIERS IN PLANT SCIENCE 2021; 12:721614. [PMID: 34512700 PMCID: PMC8424087 DOI: 10.3389/fpls.2021.721614] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 07/19/2021] [Indexed: 06/01/2023]
Abstract
Grapevine (Vitis vinifera L.) is one of the most important crops worldwide but is subjected to multiple biotic and abiotic stresses, especially related to climate change. In this context, the grapevine culture could take advantage of symbiosis through association with arbuscular mycorrhizal fungi (AMF), which are able to establish symbiosis with most terrestrial plants. Indeed, it is well established that mycorrhization improves grapevine nutrition and resistance to stresses, especially water stress and resistance to root pathogens. Thus, it appears essential to understand the effect of mycorrhization on grapevine metabolism and defense responses. In this study, we combined a non-targeted metabolomic approach and a targeted transcriptomic study to analyze changes induced in both the roots and leaves of V. vinifera cv. Gewurztraminer by colonization with Rhizophagus irregularis (Ri). We showed that colonization of grapevine with AMF triggers major reprogramming of primary metabolism in the roots, especially sugar and fatty acid metabolism. On the other hand, mycorrhizal roots had decreased contents of most sugars and sugar acids. A significant increase in several fatty acids (C16:1, linoleic and linolenic acids and the C20 arachidonic and eicosapentaenoic acids) was also detected. However, a downregulation of the JA biosynthesis pathway was evidenced. We also found strong induction of the expression of PR proteins from the proteinase inhibitor (PR6) and subtilase (PR7) families in roots, suggesting that these proteins are involved in the mycorrhiza development but could also confer higher resistance to root pathogens. Metabolic changes induced by mycorrhization were less marked in leaves but involved higher levels of linoleic and linolenic acids and decreased sucrose, quinic, and shikimic acid contents. In addition, Ri colonization resulted in enhanced JA and SA levels in leaves. Overall, this study provides a detailed picture of metabolic changes induced by AMF colonization in a woody, economically important species. Moreover, stimulation of fatty acid biosynthesis and PR protein expression in roots and enhanced defense hormone contents in leaves establish first insight in favor of better resistance of grapevine to various pathogens provided by AMF colonization.
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Affiliation(s)
- Mary-Lorène Goddard
- Laboratoire Vigne, Biotechnologies et Environnement (LVBE, UPR 3991), Université de Haute Alsace, Colmar, France
- Laboratoire d'Innovation Moléculaire et Applications, Université de Haute-Alsace, Université de Strasbourg, CNRS, LIMA, UMR 7042, Mulhouse, France
| | - Lorène Belval
- Laboratoire Vigne, Biotechnologies et Environnement (LVBE, UPR 3991), Université de Haute Alsace, Colmar, France
| | - Isabelle R. Martin
- Laboratoire Vigne, Biotechnologies et Environnement (LVBE, UPR 3991), Université de Haute Alsace, Colmar, France
| | - Lucie Roth
- Laboratoire Vigne, Biotechnologies et Environnement (LVBE, UPR 3991), Université de Haute Alsace, Colmar, France
- Laboratoire d'Innovation Moléculaire et Applications, Université de Haute-Alsace, Université de Strasbourg, CNRS, LIMA, UMR 7042, Mulhouse, France
| | - Hélène Laloue
- Laboratoire Vigne, Biotechnologies et Environnement (LVBE, UPR 3991), Université de Haute Alsace, Colmar, France
| | - Laurence Deglène-Benbrahim
- Laboratoire Vigne, Biotechnologies et Environnement (LVBE, UPR 3991), Université de Haute Alsace, Colmar, France
| | - Laure Valat
- Laboratoire Vigne, Biotechnologies et Environnement (LVBE, UPR 3991), Université de Haute Alsace, Colmar, France
| | - Christophe Bertsch
- Laboratoire Vigne, Biotechnologies et Environnement (LVBE, UPR 3991), Université de Haute Alsace, Colmar, France
| | - Julie Chong
- Laboratoire Vigne, Biotechnologies et Environnement (LVBE, UPR 3991), Université de Haute Alsace, Colmar, France
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Qin W, Yan H, Zou B, Guo R, Ci D, Tang Z, Zou X, Zhang X, Yu X, Wang Y, Si T. Arbuscular mycorrhizal fungi alleviate salinity stress in peanut: Evidence from pot‐grown and field experiments. Food Energy Secur 2021. [DOI: 10.1002/fes3.314] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Affiliation(s)
- Wenjie Qin
- Shandong Provincial Key Laboratory of Dryland Farming Technology College of Agronomy Qingdao Agricultural University Qingdao China
| | - Hengyu Yan
- Shandong Provincial Key Laboratory of Dryland Farming Technology College of Agronomy Qingdao Agricultural University Qingdao China
| | - Bingyin Zou
- Shandong Provincial Key Laboratory of Dryland Farming Technology College of Agronomy Qingdao Agricultural University Qingdao China
| | - Runze Guo
- Shandong Provincial Key Laboratory of Dryland Farming Technology College of Agronomy Qingdao Agricultural University Qingdao China
| | - Dunwei Ci
- Shandong Peanut Research Institute Qingdao China
| | - Zhaohui Tang
- Institute of Crop Germplasm Resources Shandong Academy of Agricultural Sciences (SAAS) Jinan China
| | - Xiaoxia Zou
- Shandong Provincial Key Laboratory of Dryland Farming Technology College of Agronomy Qingdao Agricultural University Qingdao China
| | - Xiaojun Zhang
- Shandong Provincial Key Laboratory of Dryland Farming Technology College of Agronomy Qingdao Agricultural University Qingdao China
| | - Xiaona Yu
- Shandong Provincial Key Laboratory of Dryland Farming Technology College of Agronomy Qingdao Agricultural University Qingdao China
| | - Yuefu Wang
- Shandong Provincial Key Laboratory of Dryland Farming Technology College of Agronomy Qingdao Agricultural University Qingdao China
| | - Tong Si
- Shandong Provincial Key Laboratory of Dryland Farming Technology College of Agronomy Qingdao Agricultural University Qingdao China
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Riaz M, Kamran M, Fang Y, Wang Q, Cao H, Yang G, Deng L, Wang Y, Zhou Y, Anastopoulos I, Wang X. Arbuscular mycorrhizal fungi-induced mitigation of heavy metal phytotoxicity in metal contaminated soils: A critical review. JOURNAL OF HAZARDOUS MATERIALS 2021; 402:123919. [PMID: 33254825 DOI: 10.1016/j.jhazmat.2020.123919] [Citation(s) in RCA: 151] [Impact Index Per Article: 50.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Revised: 09/03/2020] [Accepted: 09/05/2020] [Indexed: 05/07/2023]
Abstract
The heavy metal pollution is a worldwide problem and has received a serious concern for the ecosystem and human health. In the last decade, remediation of the agricultural polluted soil has attracted great attention. Phytoremediation is one of the technologies that effectively alleviate heavy metal toxicity, however, this technique is limited to many factors contributing to low plant growth rate and nature of metal toxicities. Arbuscular mycorrhizal fungi (AMF) assisted alleviation of heavy metal phytotoxicity is a cost-effective and environment-friendly strategy. AMF have a symbiotic relationship with the host plant. The bidirectional exchange of resources is a hallmark and also a functional necessity in mycorrhizal symbiosis. During the last few years, a significant progress in both physiological and molecular mechanisms regarding roles of AMF in the alleviation of heavy metals (HMs) toxicities in plants, acquisition of nutrients, and improving plant performance under toxic conditions of HMs has been well studied. This review summarized the current knowledge regarding AMF assisted remediation of heavy metals and some of the strategies used by mycorrhizal fungi to cope with stressful environments. Moreover, this review provides the information of both molecular and physiological responses of mycorrhizal plants as well as AMF to heavy metal stress which could be helpful for exploring new insight into the mechanisms of HMs remediation by utilizing AMF.
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Affiliation(s)
- Muhammad Riaz
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Muhammad Kamran
- College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, PR China
| | - Yizeng Fang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Qianqian Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Huayuan Cao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Guoling Yang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Lulu Deng
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Youjuan Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Yaoyu Zhou
- College of Resources and Environment, Hunan Agricultural University, Changsha, 410128, PR China
| | - Ioannis Anastopoulos
- Radioanalytical and Environmental Chemistry Group, Department of Chemistry, University of Cyprus, P.O. Box 20537, Nicosia, CY-1678, Cyprus
| | - Xiurong Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China.
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11
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Torres N, Yu R, Kurtural SK. Arbuscular Mycrorrhizal Fungi Inoculation and Applied Water Amounts Modulate the Response of Young Grapevines to Mild Water Stress in a Hyper-Arid Season. FRONTIERS IN PLANT SCIENCE 2021; 11:622209. [PMID: 33519880 PMCID: PMC7840569 DOI: 10.3389/fpls.2020.622209] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Accepted: 12/14/2020] [Indexed: 06/02/2023]
Abstract
Several factors may affect the success of a replanting vineyard. Given the current environmental conditions, an optimized irrigation schedule would still be one of the most desirable tools to improve crop productivity and fruit quality. On the other hand, the symbiosis of grapevines with arbuscular mycorrhizal fungi (AMF) is a key component of the vineyard production systems improving the vine growth, nutrient uptake, and berry quality. The aim of this study was to characterize the response of Merlot grapevines to AMF inoculation and two different irrigation amounts in their first productive year. The experiment was conducted on 2-year Merlot grapevines inoculated with AMF (I) or not-inoculated (NI) and subjected to two irrigation amounts, full irrigated (FI), where the amount of water was enough to maintain expansive growth and half irrigated (HI) where plants received the half of the amount of water of FI plants. Water status, gas exchange parameters, growth, mineral content, berry composition, and mycorrhizal colonization were monitored through the season. AMF inoculation improved the grapevine vegetative growth, water status, and photosynthetic activity, especially when vines were subjected to HI irrigation; however, no effect was observed on the leaf mineral content, must pH, total soluble solids, or total acidity. The main effects were observed on the flavonoid composition of berry skins at harvest. Irrigation amounts and mycorrhizal inoculation modified cyanidin and peonidin derivatives whereas flavonol composition was mainly affected by irrigation treatments. A strong relationship between the mycorrhizal colonization rate of roots and total quercetins, cyanidins, and peonidins was found. Findings support the use of a mycorrhizal inoculum and a better water management in a hyper-arid growing season; however, these results may be affected by edaphoclimatic characteristics and living microbiota in vineyard soils, which should be taken into account before making the decision of inoculating the vineyard.
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12
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Fernandes LDS, Correa FM, Ingram KT, de Almeida AAF, Royaert S. QTL mapping and identification of SNP-haplotypes affecting yield components of Theobroma cacao L. HORTICULTURE RESEARCH 2020; 7:26. [PMID: 32140235 PMCID: PMC7049306 DOI: 10.1038/s41438-020-0250-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2019] [Accepted: 01/15/2020] [Indexed: 05/28/2023]
Abstract
Cacao is a crop of global relevance that faces constant demands for improved bean yield. However, little is known about the genomic regions controlling the crop yield and genes involved in cacao bean filling. Hence, to identify the quantitative trait loci (QTL) associated with cacao yield and bean filling, we performed a QTL mapping in a segregating mapping population comprising 459 trees of a cross between 'TSH 1188' and 'CCN 51'. All variables showed considerable phenotypic variation and had moderate to high heritability values. We identified 24 QTLs using a genetic linkage map that contains 3526 single nucleotide polymorphism (SNP) markers. Haplotype analysis at the significant QTL region on chromosome IV pointed to the alleles from the maternal parent, 'TSH 1188', as the ones that affect the cacao yield components the most. The recombination events identified within these QTL regions allowed us to identify candidate genes that may take part in the different steps of pod growth and bean filling. Such candidate genes seem to play a significant role in the source-to-sink transport of sugars and amino acids, and lipid metabolism, such as fatty acid production. The SNP markers mapped in our study are now being used to select potential high-yielding cacao varieties through marker-assisted selection in our existing cacao-breeding experiments.
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Affiliation(s)
| | - Fábio M. Correa
- Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, Rodovia Ilhéus-Itabuna, Km 16, Bairro Salobrinho, Ilhéus, BA CEP 45.662-900 Brazil
| | - Keith T. Ingram
- Mars, Incorporated, 13601 Old Cutler Road, Miami, FL 33158 USA
| | - Alex-Alan Furtado de Almeida
- Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, Rodovia Ilhéus-Itabuna, Km 16, Bairro Salobrinho, Ilhéus, BA CEP 45.662-900 Brazil
| | - Stefan Royaert
- Mars, Incorporated, 13601 Old Cutler Road, Miami, FL 33158 USA
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Wu F, Fang F, Wu N, Li L, Tang M. Nitrate Transporter Gene Expression and Kinetics of Nitrate Uptake by Populus × canadensis 'Neva' in Relation to Arbuscular Mycorrhizal Fungi and Nitrogen Availability. Front Microbiol 2020; 11:176. [PMID: 32184762 PMCID: PMC7058973 DOI: 10.3389/fmicb.2020.00176] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2019] [Accepted: 01/24/2020] [Indexed: 12/24/2022] Open
Abstract
Plants and other organisms in the ecosystem compete for the limited nitrogen (N) in the soil. Formation of a symbiotic relationship with arbuscular mycorrhizal fungi (AMF) may influence plant competitiveness for N. However, the effects of AMF on plant nitrate (NO3 -) uptake capacity remain unknown. In this study, a pot experiment was conducted to investigate the effects of N application and Rhizophagus irregularis inoculation on the root absorbing area, uptake kinetics of NO3 -, and the expression of NO3 - transporter (NRT) genes in Populus × canadensis 'Neva'. The results showed that R. irregularis colonized more than 70% of the roots of the poplar and increased root active absorbing area/total absorbing area. The uptake kinetics of NO3 - by poplar fitted the Michaelis-Menten equation. Mycorrhizal plants had a higher maximum uptake rate (V max) value than non-mycorrhizal plants, indicating that R. irregularis enhanced the NO3 - uptake capacity of poplar. The expression of NRTs in roots, namely, NRT1;2, NRT2;4B, NRT2;4C, NRT3;1A, NRT3;1B, and NRT3;1C, was decreased by R. irregularis under conditions of 0 and 1 mM NH4NO3. This study demonstrated that the improved NO3 - uptake capacity by R. irregularis was not achieved by up-regulating the expression of NRTs in roots. The mycorrhizal pathway might repress root direct pathway in the NO3 - uptake by mycorrhizal plants.
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Affiliation(s)
- Fei Wu
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Laboratory of Lingnan Modern Agriculture, Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- College of Forestry, Northwest A&F University, Yangling, China
- Key Laboratory of State Forestry and Grassland Administration on Forest Ecosystem Protection and Restoration of Poyang Lake Watershed, College of Forestry, Jiangxi Agricultural University, Nanchang, China
| | - Fengru Fang
- College of Forestry, Northwest A&F University, Yangling, China
| | - Na Wu
- School of Life Science, Shanxi Datong University, Datong, China
| | - Li Li
- College of Forestry, Northwest A&F University, Yangling, China
| | - Ming Tang
- State Key Laboratory of Conservation and Utilization of Subtropical Agro-bioresources, Guangdong Laboratory of Lingnan Modern Agriculture, Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
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Velásquez A, Vega-Celedón P, Fiaschi G, Agnolucci M, Avio L, Giovannetti M, D'Onofrio C, Seeger M. Responses of Vitis vinifera cv. Cabernet Sauvignon roots to the arbuscular mycorrhizal fungus Funneliformis mosseae and the plant growth-promoting rhizobacterium Ensifer meliloti include changes in volatile organic compounds. MYCORRHIZA 2020; 30:161-170. [PMID: 31974639 DOI: 10.1007/s00572-020-00933-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Accepted: 01/10/2020] [Indexed: 05/08/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi and plant growth-promoting rhizobacteria (PGPR) are beneficial microorganisms that may associate with grapevine roots, improving stress tolerance, growth, and nutrition. AM fungi and PGPR enhance the production of plant secondary metabolites, including volatile organic compounds (VOCs) that play a key role in the interaction of plants with the environment and are involved in defence mechanisms. The aim of this study was to analyse the effects of an AM fungus and a rhizobacterium on plant growth and VOCs in Vitis vinifera cv. Cabernet Sauvignon roots to gain insight into the potential role of plant-rhizosphere microorganisms in vine growth and defence. Grapevines were inoculated or not with the AM fungus Funneliformis mosseae IN101 and/or the plant growth-promoting rhizobacterium Ensifer meliloti TSA41. Both microbial strains enhanced plant growth. Fifty-eight VOCs extracted from ground roots were identified using headspace solid-phase microextraction coupled to gas chromatography/mass spectrometry. VOCs were induced by F. mosseae IN101, increasing up to 87% compared with control plants. Monoterpenes were strongly enhanced by F. mosseae IN101, increasing up to 113% compared with control plants. Interestingly, monoterpene alcohols related to plant defence, such as myrtenol, p-cymen-7-ol, and p-mentha-1.8-dien-7-ol were increased. By contrast, E. meliloti TSA41 did not significantly affect VOCs. The knowledge of the effects of AM fungi and PGPR on grapevine VOCs may contribute to an integrated and sustainable management of vineyards.
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Affiliation(s)
- Alexis Velásquez
- Chemistry Department, Universidad Técnica Federico Santa María, Avenida España, 1680, Valparaíso, Chile
- Biotechnology Center "Dr. Daniel Alkalay Lowitt", Universidad Técnica Federico Santa María, General Bari, 699, Valparaíso, Chile
| | - Paulina Vega-Celedón
- Chemistry Department, Universidad Técnica Federico Santa María, Avenida España, 1680, Valparaíso, Chile
- Biotechnology Center "Dr. Daniel Alkalay Lowitt", Universidad Técnica Federico Santa María, General Bari, 699, Valparaíso, Chile
| | - Grazia Fiaschi
- Department of Agriculture, Food, and Environment, University of Pisa, Via del Borghetto 80, Pisa, Italy
| | - Monica Agnolucci
- Department of Agriculture, Food, and Environment, University of Pisa, Via del Borghetto 80, Pisa, Italy
- Interdepartmental Research Center Nutrafood-Nutraceuticals and Food for Health, University of Pisa, Pisa, Italy
| | - Luciano Avio
- Department of Agriculture, Food, and Environment, University of Pisa, Via del Borghetto 80, Pisa, Italy
- Interdepartmental Research Center Nutrafood-Nutraceuticals and Food for Health, University of Pisa, Pisa, Italy
| | - Manuela Giovannetti
- Department of Agriculture, Food, and Environment, University of Pisa, Via del Borghetto 80, Pisa, Italy
- Interdepartmental Research Center Nutrafood-Nutraceuticals and Food for Health, University of Pisa, Pisa, Italy
| | - Claudio D'Onofrio
- Department of Agriculture, Food, and Environment, University of Pisa, Via del Borghetto 80, Pisa, Italy
- Interdepartmental Research Center Nutrafood-Nutraceuticals and Food for Health, University of Pisa, Pisa, Italy
| | - Michael Seeger
- Chemistry Department, Universidad Técnica Federico Santa María, Avenida España, 1680, Valparaíso, Chile.
- Biotechnology Center "Dr. Daniel Alkalay Lowitt", Universidad Técnica Federico Santa María, General Bari, 699, Valparaíso, Chile.
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Campos C, Nobre T, Goss MJ, Faria J, Barrulas P, Carvalho M. Transcriptome Analysis of Wheat Roots Reveals a Differential Regulation of Stress Responses Related to Arbuscular Mycorrhizal Fungi and Soil Disturbance. BIOLOGY 2019; 8:biology8040093. [PMID: 31835704 PMCID: PMC6956056 DOI: 10.3390/biology8040093] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Revised: 12/02/2019] [Accepted: 12/06/2019] [Indexed: 02/06/2023]
Abstract
Symbioses with soil microorganisms are central in shaping the diversity and productivity of land plants and provide protection against a diversity of stresses, including metal toxicity. Arbuscular mycorrhizal fungi (AMF) can form extensive extraradical mycelial networks (ERM), which are very efficient in colonizing a new host. We quantified the responses of transcriptomes of wheat and one AMF partner, Rhizoglomus irregulare, to soil disturbance (Undisturbed vs. Disturbed) and to two different preceding mycotrophic species (Ornithopus compressus and Lolium rigidum). Soil disturbance and preceding plant species engender different AMF communities in wheat roots, resulting in a differential tolerance to soil manganese (Mn) toxicity. Soil disturbance negatively impacted wheat growth under manganese toxicity, probably due to the disruption of the ERM, and activated a large number of stress and starvation-related genes. The O. compressus treatment, which induces a greater Mn protection in wheat than L. rigidum, activated processes related to cellular division and growth, and very few related to stress. The L. rigidum treatment mostly induced genes that were related to oxidative stress, disease protection, and metal ion binding. R. irregulare cell division and molecular exchange between nucleus and cytoplasm were increased by O. compressus. These findings are highly relevant for sustainable agricultural systems, when considering a fit-for-purpose symbiosis.
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Affiliation(s)
- Catarina Campos
- ICAAM—Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Instituto de Investigação e Formação Avançada, Universidade de Évora. Pólo da Mitra, Ap. 94, 7006-554 Évora, Portugal; (T.N.); (J.F.); (M.C.)
- Correspondence: ; Tel.: +351-266-760-885
| | - Tânia Nobre
- ICAAM—Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Instituto de Investigação e Formação Avançada, Universidade de Évora. Pólo da Mitra, Ap. 94, 7006-554 Évora, Portugal; (T.N.); (J.F.); (M.C.)
| | - Michael J. Goss
- School of Environmental Sciences, University of Guelph, Guelph, ON N1G 2W1, Canada;
| | - Jorge Faria
- ICAAM—Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Instituto de Investigação e Formação Avançada, Universidade de Évora. Pólo da Mitra, Ap. 94, 7006-554 Évora, Portugal; (T.N.); (J.F.); (M.C.)
| | - Pedro Barrulas
- Laboratório HERCULES, Universidade de Évora, Largo Marquês de Marialva 8, 7000-809 Évora, Portugal;
| | - Mário Carvalho
- ICAAM—Instituto de Ciências Agrárias e Ambientais Mediterrânicas, Instituto de Investigação e Formação Avançada, Universidade de Évora. Pólo da Mitra, Ap. 94, 7006-554 Évora, Portugal; (T.N.); (J.F.); (M.C.)
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Li Y, Nan Z, Duan T. Rhizophagus intraradices promotes alfalfa (Medicago sativa) defense against pea aphids (Acyrthosiphon pisum) revealed by RNA-Seq analysis. MYCORRHIZA 2019; 29:623-635. [PMID: 31588522 DOI: 10.1007/s00572-019-00915-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2019] [Accepted: 09/06/2019] [Indexed: 06/10/2023]
Abstract
Pea aphids (Acyrthosiphon pisum) are one of the most important insect pests of alfalfa (Medicago sativa). Arbuscular mycorrhizal (AM) fungi are important microorganisms of the agroecosystem that promote plant growth and improve plant resistance to abiotic and biotic stress. Little information is available on AM fungi-regulated defense responses of alfalfa to pea aphids. To better understand how alfalfa responds and to evaluate the impact of an AM fungus on aphid infestation, transcriptome sequencing was done and physiological parameters were analyzed. Our experiments showed that Rhizophagus intraradices can regulate plant response to aphids by promoting growth and increasing plant peroxidase (POD) and catalase (CAT) activities and salicylic acid (SA) concentration after aphid infestation. Transcriptome analysis showed that R. intraradices increased the expression of resistance-related genes, such as "WRKY transcription factor" and "Kunitz trypsin inhibitor." Additionally, GO terms "chitinase activity," "peroxidase activity," "defense response," and "response to biotic stimulus," and KEGG pathways "phenylpropanoid biosynthesis" and "phenylalanine metabolism" were significantly enriched in mycorrhizal fungus-inoculated plants and aphid-infested plants. These findings will improve our understanding about the impact of this AM fungus on alfalfa response to aphid feeding and will provide the basis for further research on plant defense against aphids.
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Affiliation(s)
- Yingde Li
- State Key Laboratory of Grassland Agro-Ecosystems Lanzhou Unviersity, Lanzhou, China
- Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs, Lanzhou, China
- College of Pastoral Agriculture Science and Technology, Lanzhou University, 768 Jiayuguan West Road, Lanzhou, 730020, NO, China
| | - Zhibiao Nan
- State Key Laboratory of Grassland Agro-Ecosystems Lanzhou Unviersity, Lanzhou, China
- Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs, Lanzhou, China
- College of Pastoral Agriculture Science and Technology, Lanzhou University, 768 Jiayuguan West Road, Lanzhou, 730020, NO, China
| | - Tingyu Duan
- State Key Laboratory of Grassland Agro-Ecosystems Lanzhou Unviersity, Lanzhou, China.
- Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture and Rural Affairs, Lanzhou, China.
- College of Pastoral Agriculture Science and Technology, Lanzhou University, 768 Jiayuguan West Road, Lanzhou, 730020, NO, China.
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Balestrini R, Rosso LC, Veronico P, Melillo MT, De Luca F, Fanelli E, Colagiero M, di Fossalunga AS, Ciancio A, Pentimone I. Transcriptomic Responses to Water Deficit and Nematode Infection in Mycorrhizal Tomato Roots. Front Microbiol 2019; 10:1807. [PMID: 31456765 PMCID: PMC6700261 DOI: 10.3389/fmicb.2019.01807] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Accepted: 07/22/2019] [Indexed: 11/13/2022] Open
Abstract
Climate changes include the intensification of drought in many parts of the world, increasing its frequency, severity and duration. However, under natural conditions, environmental stresses do not occur alone, and, in addition, more stressed plants may become more susceptible to attacks by pests and pathogens. Studies on the impact of the arbuscular mycorrhizal (AM) symbiosis on tomato response to water deficit showed that several drought-responsive genes are differentially regulated in AM-colonized tomato plants (roots and leaves) during water deficit. To date, global changes in mycorrhizal tomato root transcripts under water stress conditions have not been yet investigated. Here, changes in root transcriptome in the presence of an AM fungus, with or without water stress (WS) application, have been evaluated in a commercial tomato cultivar already investigated for the water stress response during AM symbiosis. Since root-knot nematodes (RKNs, Meloidogyne incognita) are obligate endoparasites and cause severe yield losses in tomato, the impact of the AM fungal colonization on RKN infection at 7 days post-inoculation was also evaluated. Results offer new information about the response to AM symbiosis, highlighting a functional redundancy for several tomato gene families, as well as on the tomato and fungal genes involved in WS response during symbiosis, underlying the role of the AM fungus. Changes in the expression of tomato genes related to nematode infection during AM symbiosis highlight a role of AM colonization in triggering defense responses against RKN in tomato. Overall, new datasets on the tomato response to an abiotic and biotic stress during AM symbiosis have been obtained, providing useful data for further researches.
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Affiliation(s)
- Raffaella Balestrini
- Consiglio Nazionale delle Ricerche, Istituto per la Protezione Sostenibile delle Piante, Turin, Italy
| | - Laura C Rosso
- Consiglio Nazionale delle Ricerche, Istituto per la Protezione Sostenibile delle Piante, Turin, Italy
| | - Pasqua Veronico
- Consiglio Nazionale delle Ricerche, Istituto per la Protezione Sostenibile delle Piante, Turin, Italy
| | - Maria Teresa Melillo
- Consiglio Nazionale delle Ricerche, Istituto per la Protezione Sostenibile delle Piante, Turin, Italy
| | - Francesca De Luca
- Consiglio Nazionale delle Ricerche, Istituto per la Protezione Sostenibile delle Piante, Turin, Italy
| | - Elena Fanelli
- Consiglio Nazionale delle Ricerche, Istituto per la Protezione Sostenibile delle Piante, Turin, Italy
| | - Mariantonietta Colagiero
- Consiglio Nazionale delle Ricerche, Istituto per la Protezione Sostenibile delle Piante, Turin, Italy
| | | | - Aurelio Ciancio
- Consiglio Nazionale delle Ricerche, Istituto per la Protezione Sostenibile delle Piante, Turin, Italy
| | - Isabella Pentimone
- Consiglio Nazionale delle Ricerche, Istituto per la Protezione Sostenibile delle Piante, Turin, Italy
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Bonfante P. The future has roots in the past: the ideas and scientists that shaped mycorrhizal research. THE NEW PHYTOLOGIST 2018; 220:982-995. [PMID: 30160311 DOI: 10.1111/nph.15397] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2018] [Accepted: 07/10/2018] [Indexed: 05/09/2023]
Abstract
Contents Summary 982 I. Introduction 982 II. The portraits of our ancestors: a gallery of ideas from more than 100 years of mycorrhizal research 983 III. Mycorrhizal fungi in the 'omics' era: first puzzle, how to name mycorrhizal fungi 985 IV. Signalling: a central question of our time? 987 V. The colonization process: how cellular studies predicted future 'omics' data 989 VI. The genetics underlying colonization events 991 VII. Concluding thoughts: chance and needs in mycorrhizal symbioses 992 Acknowledgements 992 References 992 SUMMARY: Our knowledge of mycorrhizas dates back to at least 150 years ago, when the plant pathologists A. B. Frank and G. Gibelli described the surprisingly morphology of forest tree roots surrounded by a fungal mantle. Compared with this history, our molecular study of mycorrhizas remains a young science. To trace the history of mycorrhizal research, from its roots in the distant past, to the present and the future, this review outlines a few topics that were already central in the 19th century and were seminal in revealing the biological meaning of mycorrhizal associations. These include investigations of nutrient exchange between partners, plant responses to mycorrhizal fungi, and the identity and evolution of mycorrhizal symbionts as just a few examples of how the most recent molecular studies of mycorrhizal biology sprouted from the roots of past research. In addition to clarifying the ecological role of mycorrhizas, some of the recent results have changed the perception of the relevance of mycorrhizas in the scientific community, and in the whole of society. Looking to past knowledge while foreseeing strategies for the next steps can help us catch a glimpse of the future of mycorrhizal research.
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Affiliation(s)
- Paola Bonfante
- Department of Life Sciences and Systems Biology, University of Turin, Viale Mattioli, 25, 10125, Turin, Italy
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An J, Sun M, van Velzen R, Ji C, Zheng Z, Limpens E, Bisseling T, Deng X, Xiao S, Pan Z. Comparative transcriptome analysis of Poncirus trifoliata identifies a core set of genes involved in arbuscular mycorrhizal symbiosis. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:5255-5264. [PMID: 30312435 PMCID: PMC6184448 DOI: 10.1093/jxb/ery283] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2018] [Accepted: 07/24/2018] [Indexed: 05/20/2023]
Abstract
The perennial woody plants of citrus are one of the most important fruit crops in the world and largely depends on arbuscular mycorrhizal symbiosis (AMS) to obtain essential nutrients from soil. However, the molecular aspects of AMS in citrus and perennial woody plants in general have largely been understudied. We used RNA-sequencing to identify differentially expressed genes in roots of Poncirus trifoliata upon mycorrhization by the AM fungus Glomus versiforme and evaluated their conservation by comparative transcriptome analyses with four herbaceous model plants. We identified 282 differentially expressed genes in P. trifoliata, including orthologs of 21 genes with characterized roles in AMS and 83 genes that are considered to be conserved in AM-host plants. Comparative transcriptome analysis revealed a 'core set' of 156 genes from P. trifoliata whose orthologous genes from at least three of the five species also exhibited similar transcriptional changes during AMS. Functional analysis of one of these conserved AM-induced genes, a 3-keto-acyl-ACP reductase (FatG) involved in fatty acid biosynthesis, confirmed its involvement in AMS in Medicago truncatula. Our results identify a core transcriptional program for AMS that is largely conserved between P. trifoliata and other plants. The comparative transcriptomics approach adds to previous phylogenomics studies to identify conserved genes required for AMS.
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Affiliation(s)
- Jianyong An
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region, Ministry of Agriculture), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, P.R. China
| | - Mengqian Sun
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region, Ministry of Agriculture), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, P.R. China
| | - Robin van Velzen
- Department of Plant Sciences, Laboratory of Molecular Biology, Wageningen University, Droevendaalsesteeg, PB Wageningen, Netherlands
| | - Chuanya Ji
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region, Ministry of Agriculture), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, P.R. China
| | - Zijun Zheng
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region, Ministry of Agriculture), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, P.R. China
| | - Erik Limpens
- Department of Plant Sciences, Laboratory of Molecular Biology, Wageningen University, Droevendaalsesteeg, PB Wageningen, Netherlands
| | - Ton Bisseling
- Department of Plant Sciences, Laboratory of Molecular Biology, Wageningen University, Droevendaalsesteeg, PB Wageningen, Netherlands
| | - Xiuxin Deng
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region, Ministry of Agriculture), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, P.R. China
| | - Shunyuan Xiao
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region, Ministry of Agriculture), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, P.R. China
- Institute for Bioscience and Biotechnology Research & Department of Plant Sciences and Landscape Architecture, University of Maryland College Park, Rockville, MD, USA
| | - Zhiyong Pan
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region, Ministry of Agriculture), College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, P.R. China
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Avio L, Turrini A, Giovannetti M, Sbrana C. Designing the Ideotype Mycorrhizal Symbionts for the Production of Healthy Food. FRONTIERS IN PLANT SCIENCE 2018; 9:1089. [PMID: 30154803 PMCID: PMC6102486 DOI: 10.3389/fpls.2018.01089] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2018] [Accepted: 07/05/2018] [Indexed: 05/03/2023]
Abstract
The new paradigm in agriculture, sustainable intensification, is focusing back onto beneficial soil microorganisms, for the role played in reducing the input of chemical fertilizers and pesticides and improving plant nutrition and health. Worldwide, more and more attention is deserved to arbuscular mycorrhizal fungi (AMF), which establish symbioses with the roots of most land plants and facilitate plant nutrient uptake, by means of a large network of extraradical hyphae spreading from colonized roots to the surrounding soil and functioning as a supplementary absorbing system. AMF protect plants from biotic and abiotic stresses and are able to modulate the activity of antioxidant enzymes and the biosynthesis of secondary metabolites (phytochemicals), such as polyphenols, anthocyanins, phytoestrogens and carotenoids, that play a fundamental role in promoting human health. An increasing number of studies focused on the use of AMF symbionts for the production of functional food, with enhanced nutritional and nutraceutical value. Yet, while several plant species were investigated, only few AMF were utilized, thus limiting the full exploitation of their wide physiological and genetic diversity. Here, we will focus on AMF effects on the biosynthesis of plant secondary metabolites with health-promoting activity, and on the criteria for a finely tuned, targeted selection of the best performing symbionts, to be utilized as sustainable biotechnological tools for the production of safe and healthy plant foods.
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Affiliation(s)
- Luciano Avio
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy
| | - Alessandra Turrini
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy
- Interdepartmental Research Center “Nutraceuticals and Food for Health”, University of Pisa, Pisa, Italy
| | - Manuela Giovannetti
- Department of Agriculture, Food and Environment, University of Pisa, Pisa, Italy
- Interdepartmental Research Center “Nutraceuticals and Food for Health”, University of Pisa, Pisa, Italy
| | - Cristiana Sbrana
- Institute of Agricultural Biology and Biotechnology, C.N.R., UOS Pisa, Pisa, Italy
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Torres N, Antolín MC, Goicoechea N. Arbuscular Mycorrhizal Symbiosis as a Promising Resource for Improving Berry Quality in Grapevines Under Changing Environments. FRONTIERS IN PLANT SCIENCE 2018; 9:897. [PMID: 30008729 PMCID: PMC6034061 DOI: 10.3389/fpls.2018.00897] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2018] [Accepted: 06/07/2018] [Indexed: 05/13/2023]
Abstract
Climate change and their resulting impacts are becoming a concern for winegrowers due to the high socioeconomic relevance of the winemaking sector worldwide. In fact, the projected climate change is expected to have detrimental impacts on the yield of grapevines, as well as on the quality and properties of grapes and wine. It is well known that arbuscular mycorrhizal fungi (AMF) can improve the nutritional quality of edible parts of crops and play essential roles in the maintenance of host plant fitness under stressed environments, including grapevines. The future scenarios of climate change may also modify the diversity and the growth of AMF in soils as well as the functionality of the mycorrhizal symbiosis. In this review, we summarize recent research progress on the effects of climate change on grapevine metabolism, paying special attention to the secondary compounds involved in the organoleptic properties of grapes and wines and to the levels of the phytohormones implied in the control of berry development and fruit ripening. In this context, the potential role of AMF for maintaining fruit quality in future climate change scenarios is discussed.
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Affiliation(s)
| | | | - Nieves Goicoechea
- Unidad Asociada al CSIC (EEAD, Zaragoza, ICVV, Logroño), Grupo de Fisiología del Estrés en Plantas (Departamento de Biología Ambiental), Facultades de Ciencias y Farmacia y Nutrición, Universidad de Navarra, Pamplona, Spain
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22
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Pollastri S, Savvides A, Pesando M, Lumini E, Volpe MG, Ozudogru EA, Faccio A, De Cunzo F, Michelozzi M, Lambardi M, Fotopoulos V, Loreto F, Centritto M, Balestrini R. Impact of two arbuscular mycorrhizal fungi on Arundo donax L. response to salt stress. PLANTA 2018; 247:573-585. [PMID: 29124326 DOI: 10.1007/s00425-017-2808-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Accepted: 11/03/2017] [Indexed: 05/12/2023]
Abstract
AM symbiosis did not strongly affect Arundo donax performances under salt stress, although differences in the plants inoculated with two different fungi were recorded. The mechanisms at the basis of the improved tolerance to abiotic stresses by arbuscular mycorrhizal (AM) fungi have been investigated mainly focusing on food crops. In this work, the potential impact of AM symbiosis on the performance of a bioenergy crop, Arundo donax, under saline conditions was considered. Specifically, we tried to understand whether AM symbiosis helps this fast-growing plant, often widespread in marginal soils, withstand salt. A combined approach, involving eco-physiological, morphometric and biochemical measurements, was used and the effects of two different AM fungal species (Funneliformis mosseae and Rhizophagus irregularis) were compared. Results indicate that potted A. donax plants do not suffer permanent damage induced by salt stress, but photosynthesis and growth are considerably reduced. Since A. donax is a high-yield biomass crop, reduction of biomass might be a serious agronomical problem in saline conditions. At least under the presently experienced growth conditions, and plant-AM combinations, the negative effect of salt on plant performance was not rescued by AM fungal colonization. However, some changes in plant metabolisms were observed following AM-inoculation, including a significant increase in proline accumulation and a trend toward higher isoprene emission and higher H2O2, especially in plants colonized by R. irregularis. This suggests that AM fungal symbiosis influences plant metabolism, and plant-AM fungus combination is an important factor for improving plant performance and productivity, in presence or absence of stress conditions.
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Affiliation(s)
- Susanna Pollastri
- The National Research Council of Italy (CNR), Institute for Sustainable Plant Protection (IPSP), 10125 Turin (M.P., E.L., A.F., R.B.), 50019, Sesto Fiorentino, SP, Italy
| | | | - Massimo Pesando
- The National Research Council of Italy (CNR), Institute for Sustainable Plant Protection (IPSP), 10125 Turin (M.P., E.L., A.F., R.B.), 50019, Sesto Fiorentino, SP, Italy
| | - Erica Lumini
- The National Research Council of Italy (CNR), Institute for Sustainable Plant Protection (IPSP), 10125 Turin (M.P., E.L., A.F., R.B.), 50019, Sesto Fiorentino, SP, Italy
| | | | | | - Antonella Faccio
- The National Research Council of Italy (CNR), Institute for Sustainable Plant Protection (IPSP), 10125 Turin (M.P., E.L., A.F., R.B.), 50019, Sesto Fiorentino, SP, Italy
| | | | - Marco Michelozzi
- CNR, Institute of Biosciences and Bioresources, Sesto Fiorentino, Italy
| | - Maurizio Lambardi
- CNR, Institute of Trees and Timber (IVALSA), Sesto Fiorentino, Italy
| | | | - Francesco Loreto
- CNR, Department of Biology, Agriculture and Food Sciences (DiSBA), Rome, Italy
| | - Mauro Centritto
- CNR, Institute of Trees and Timber (IVALSA), Sesto Fiorentino, Italy
| | - Raffaella Balestrini
- The National Research Council of Italy (CNR), Institute for Sustainable Plant Protection (IPSP), 10125 Turin (M.P., E.L., A.F., R.B.), 50019, Sesto Fiorentino, SP, Italy.
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Novello G, Gamalero E, Bona E, Boatti L, Mignone F, Massa N, Cesaro P, Lingua G, Berta G. The Rhizosphere Bacterial Microbiota of Vitis vinifera cv. Pinot Noir in an Integrated Pest Management Vineyard. Front Microbiol 2017; 8:1528. [PMID: 28855895 PMCID: PMC5557794 DOI: 10.3389/fmicb.2017.01528] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Accepted: 07/28/2017] [Indexed: 12/22/2022] Open
Abstract
Microorganisms associated with Vitis vinifera (grapevine) can affect its growth, health and grape quality. The aim of this study was to unravel the biodiversity of the bacterial rhizosphere microbiota of grapevine in an integrated pest management vineyard located in Piedmont, Italy. Comparison between the microbial community structure in the bulk and rhizosphere soil (variable: space) were performed. Moreover, the possible shifts of the bulk and rhizosphere soil microbiota according to two phenological stages such as flowering and early fruit development (variable: time) were characterized. The grapevine microbiota was identified using metagenomics and next-generation sequencing. Biodiversity was higher in the rhizosphere than in the bulk soil, independent of the phenological stage. Actinobacteria were the dominant class with frequencies ≥ 50% in all the soil samples, followed by Proteobacteria, Gemmatimonadetes, and Bacteroidetes. While Actinobacteria and Proteobacteria are well-known as being dominant in soil, this is the first time the presence of Gemmatimonadetes has been observed in vineyard soils. Gaiella was the dominant genus of Actinobacteria in all the samples. Finally, the microbiota associated with grapevine differed from the bulk soil microbiota and these variations were independent of the phenological stage of the plant.
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Affiliation(s)
- Giorgia Novello
- Dipartimento di Scienze e Innovazione Tecnologica, Università degli Studi del Piemonte OrientaleAlessandria, Italy
| | - Elisa Gamalero
- Dipartimento di Scienze e Innovazione Tecnologica, Università degli Studi del Piemonte OrientaleAlessandria, Italy
| | - Elisa Bona
- Dipartimento di Scienze e Innovazione Tecnologica, Università degli Studi del Piemonte OrientaleAlessandria, Italy
| | - Lara Boatti
- Dipartimento di Scienze e Innovazione Tecnologica, Università degli Studi del Piemonte OrientaleAlessandria, Italy.,SmartSeq s.r.l.Alessandria, Italy
| | - Flavio Mignone
- Dipartimento di Scienze e Innovazione Tecnologica, Università degli Studi del Piemonte OrientaleAlessandria, Italy.,SmartSeq s.r.l.Alessandria, Italy
| | - Nadia Massa
- Dipartimento di Scienze e Innovazione Tecnologica, Università degli Studi del Piemonte OrientaleAlessandria, Italy
| | - Patrizia Cesaro
- Dipartimento di Scienze e Innovazione Tecnologica, Università degli Studi del Piemonte OrientaleAlessandria, Italy
| | - Guido Lingua
- Dipartimento di Scienze e Innovazione Tecnologica, Università degli Studi del Piemonte OrientaleAlessandria, Italy
| | - Graziella Berta
- Dipartimento di Scienze e Innovazione Tecnologica, Università degli Studi del Piemonte OrientaleAlessandria, Italy
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Chen W, Li J, Zhu H, Xu P, Chen J, Yao Q. Arbuscular Mycorrhizal Fungus Enhances Lateral Root Formation in Poncirus trifoliata (L.) as Revealed by RNA-Seq Analysis. FRONTIERS IN PLANT SCIENCE 2017; 8:2039. [PMID: 29238356 PMCID: PMC5713035 DOI: 10.3389/fpls.2017.02039] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2017] [Accepted: 11/14/2017] [Indexed: 05/14/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) establish symbiosis with most terrestrial plants, and greatly regulate lateral root (LR) formation. Phosphorus (P), sugar, and plant hormones are proposed being involved in this regulation, however, no global evidence regarding these factors is available so far, especially in woody plants. In this study, we inoculated trifoliate orange seedlings (Poncirus trifoliata L. Raf) with an AMF isolate, Rhizophagus irregularis BGC JX04B. After 4 months of growth, LR formation was characterized, and sugar contents in roots were determined. RNA-Seq analysis was performed to obtain the transcriptomes of LR root tips from non-mycorrhizal and mycorrhizal seedlings. Quantitative real time PCR (qRT-PCR) of selected genes was also conducted for validation. The results showed that AMF significantly increased LR number, as well as plant biomass and shoot P concentration. The contents of glucose and fructose in primary root, and sucrose content in LR were also increased. A total of 909 differentially expressed genes (DEGs) were identified in response to AMF inoculation, and qRT-PCR validated the transcriptomic data. The numbers of DEGs related to P, sugar, and plant hormones were 31, 32, and 25, respectively. For P metabolism, the most up-regulated DEGs mainly encoded phosphate transporter, and the most down-regulated DEGs encoded acid phosphatase. For sugar metabolism, the most up-regulated DEGs encoded polygalacturonase and chitinase. For plant hormones, the most up-regulated DEGs were related to auxin signaling, and the most down-regulated DEGs were related to ethylene signaling. PLS-SEM analysis indicates that P metabolism was the most important pathway by which AMF regulates LR formation in this study. These data reveal the changes of genome-wide gene expression in responses to AMF inoculation in trifoliate orange and provide a solid basis for the future identification and characterization of key genes involved in LR formation induced by AMF.
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Affiliation(s)
- Weili Chen
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Juan Li
- Department of Horticulture, Zhongkai University of Agriculture and Engineering, Guangzhou, China
| | - Honghui Zhu
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology, Guangzhou, China
| | - Pengyang Xu
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Jiezhong Chen
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, College of Horticulture, South China Agricultural University, Guangzhou, China
| | - Qing Yao
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, College of Horticulture, South China Agricultural University, Guangzhou, China
- *Correspondence: Qing Yao
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