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Yüce M, Öncer N, Çınar CD, Günaydın BN, Akçora Zİ, Kurt H. Comprehensive Raman Fingerprinting and Machine Learning-Based Classification of 14 Pesticides Using a 785 nm Custom Raman Instrument. BIOSENSORS 2025; 15:168. [PMID: 40136965 PMCID: PMC11940532 DOI: 10.3390/bios15030168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/25/2024] [Revised: 02/24/2025] [Accepted: 02/26/2025] [Indexed: 03/27/2025]
Abstract
Raman spectroscopy enables fast, label-free, qualitative, and quantitative observation of the physical and chemical properties of various substances. Here, we present a 785 nm custom-built Raman spectroscopy instrument designed for sensing applications in the 400-1700 cm-1 spectral range. We demonstrate the performance of the instrument by fingerprinting 14 pesticide reference samples with over twenty technical repeats per sample. We present molecular Raman fingerprints of the pesticides comprehensively and distinguish similarities and differences among them using multivariate analysis and machine learning techniques. The same pesticides were additionally investigated using a commercial 532 nm Raman instrument to see the potential variations in peak shifts and intensities. We developed a unique Raman fingerprint library for 14 reference pesticides, which is comprehensively documented in this study for the first time. The comparison shows the importance of selecting an appropriate excitation wavelength based on the target analyte. While 532 nm may be advantageous for certain compounds due to resonance enhancement, 785 nm is generally more effective for reducing fluorescence and achieving clearer Raman spectra. By employing machine learning techniques like the Random Forest Classifier, the study automates the classification of 14 different pesticides, streamlining data interpretation for non-experts. Applying such combined techniques to a wider range of agricultural chemicals, clinical biomarkers, or pollutants could provide an impetus to develop monitoring technologies in food safety, diagnostics, and cross-industry quality control applications.
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Affiliation(s)
- Meral Yüce
- SUNUM Nanotechnology Research and Application Centre, Sabanci University, Istanbul 34956, Türkiye; (N.Ö.); (B.N.G.)
- Department of Bioengineering, Royal School of Mines, Imperial College London, London SW7 2AZ, UK
| | - Nazlı Öncer
- SUNUM Nanotechnology Research and Application Centre, Sabanci University, Istanbul 34956, Türkiye; (N.Ö.); (B.N.G.)
| | - Ceren Duru Çınar
- Department of Computer Science & Engineering, Sabanci University, Istanbul 34956, Türkiye;
| | - Beyza Nur Günaydın
- SUNUM Nanotechnology Research and Application Centre, Sabanci University, Istanbul 34956, Türkiye; (N.Ö.); (B.N.G.)
- Department of Materials Science and Nanoengineering, Sabanci University, Istanbul 34956, Türkiye
| | - Zeynep İdil Akçora
- Department of Molecular Biology, Genetics and Bioengineering, Sabanci University, Istanbul 34956, Türkiye;
| | - Hasan Kurt
- Department of Bioengineering, Royal School of Mines, Imperial College London, London SW7 2AZ, UK
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Chen XP, Lu YH, Xu B, Wei YX, Cui XL, Zhang WW, Xu GF, Zhang F, Feng CG. Retention time-independent strategy for screening pesticide residues in herbs based on a fingerprint database and all ion fragmentation acquisition with LC-QTOF MS. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2024; 16:7831-7841. [PMID: 39429225 DOI: 10.1039/d4ay01273a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2024]
Abstract
A retention time (RT)-independent strategy for nontargeted screening of pesticide residues in herbs was exploited using liquid chromatography-quadrupole time-of-flight mass spectrometry (LC-QTOF MS). The core of this strategy is a fingerprint database coupled with a data-independent acquisition (DIA) scan mode of all ion fragmentation (AIF). In the fingerprint database, a total of 150 pesticides with quasimolecular ions and fragment ions at five-level collision energies were collected as qualified ions for screening. During the data acquisition, the AIF scan was performed via real unbiased full-spectrum MS/MS acquisition. Six herb matrices spiked with 30 banned pesticides were used to evaluate the applicability of the strategy in real samples. The use of the narrow ion mass extraction window (10 mDa) and the narrow RT window (0.1 min) enabled the effective extraction of spectra from noisy backgrounds and the discovery of suspected pesticides via similarity matching of filtered qualified ions. On average, more than 11/30 of pesticides at 1 ng mL-1 and more than 23/30 of pesticides at 10 ng mL-1 or lower could be screened out in each matrix using at least two qualified ions. In addition, the AIF mode exhibited superior anti-interference capability compared to data-dependent acquisition (DDA) and sequential window acquisition of all theoretical mass spectra (SWATH), as determined by comparing the limits of screening (LOSs) of 30 banned pesticides spiked into Isatidis Folium. Finally, the developed strategy was applied to screen pesticide residues in extracts of Ganoderma and Foeniculi Fructus. Phorate-sulfone and phorate-sulfoxide were found in Ganoderma, as well as terbufos-sulfone and terbufos-sulfoxide were found in Foeniculi Fructus. In conclusion, the developed RT-independent strategy based on a fingerprint database and AIF acquisition with LC-QTOF MS seems to be one of the most efficient tools for the analysis of nontargeted pesticide residues in complicated matrices.
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Affiliation(s)
- Xiu-Ping Chen
- The Research Center of Chiral Drugs, Shanghai Frontiers Science Center for TCM Chemical Biology, Innovation Research Institute of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, 1200 Cailun Road, Shanghai 201203, China.
- Shanghai Pudong Institute for Food and Drug Control, 1043 Halei Road, Shanghai 201203, China.
| | - Yu-Han Lu
- The Research Center of Chiral Drugs, Shanghai Frontiers Science Center for TCM Chemical Biology, Innovation Research Institute of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, 1200 Cailun Road, Shanghai 201203, China.
- School of Public Health, Shanghai University of Traditional Chinese Medicine, 1200 Cailun Road, Shanghai 201203, China
| | - Bo Xu
- The Research Center of Chiral Drugs, Shanghai Frontiers Science Center for TCM Chemical Biology, Innovation Research Institute of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, 1200 Cailun Road, Shanghai 201203, China.
| | - Yi-Xin Wei
- The Research Center of Chiral Drugs, Shanghai Frontiers Science Center for TCM Chemical Biology, Innovation Research Institute of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, 1200 Cailun Road, Shanghai 201203, China.
| | - Xia-Lian Cui
- The Research Center of Chiral Drugs, Shanghai Frontiers Science Center for TCM Chemical Biology, Innovation Research Institute of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, 1200 Cailun Road, Shanghai 201203, China.
| | - Wen-Wen Zhang
- The Research Center of Chiral Drugs, Shanghai Frontiers Science Center for TCM Chemical Biology, Innovation Research Institute of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, 1200 Cailun Road, Shanghai 201203, China.
| | - Gang-Feng Xu
- Shanghai Pudong Institute for Food and Drug Control, 1043 Halei Road, Shanghai 201203, China.
| | - Fang Zhang
- The Research Center of Chiral Drugs, Shanghai Frontiers Science Center for TCM Chemical Biology, Innovation Research Institute of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, 1200 Cailun Road, Shanghai 201203, China.
| | - Chen-Guo Feng
- The Research Center of Chiral Drugs, Shanghai Frontiers Science Center for TCM Chemical Biology, Innovation Research Institute of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, 1200 Cailun Road, Shanghai 201203, China.
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Dhillon AK, Barman S, Siddhanta S. Photoinduced Electron-Transfer-Mediated Differential Recognition of Proteins on Plasmonic Surfaces. ACS APPLIED MATERIALS & INTERFACES 2024; 16:45888-45900. [PMID: 39163649 DOI: 10.1021/acsami.4c05348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/22/2024]
Abstract
Photoinduced enhanced Raman spectroscopy (PIERS) has emerged as an efficient technique for enhancing the vibrational modes of analyte molecules adsorbed on a plasmonic nanoparticle-semiconductor hybrid material through chemical enhancement governed by electron transfer from the semiconductor to the plasmonic nanoparticles under an additional ultraviolet (UV) preirradiation step. The increase in chemical enhancement is imperative in analyzing and detecting pharmaceutically important moieties, such as amino acids and proteins, with a low Raman scattering cross section, even in complex biological environments. Herein, we demonstrate that UV preirradiation induced the creation of additional oxygen vacancies by introducing a low concentration (≈1%) of Ni as a dopant in the 2D platelike morphology of the BiOCl semiconductor; i.e., defect states in the semiconductor can induce charge transfer from the semiconductor to the plasmonic nanoparticles. This phenomenon facilitates electron transfer to the adsorbed analyte on the plasmonic surface. Additionally, we have shown the usefulness of this method in protein immobilization on the substrate surface, followed by the identification of a specific protein in the mixture of proteins. Proteins containing cysteine residues capture these electrons to form a surface-bound thiol group via a transient disulfide electron adduct radical. This allows differential binding of the protein molecules to the semiconductor plasmonic hybrid depending on the concentration of surface cysteine residues in proteins. Through PIERS and principal component analysis, we demonstrate the possibility of probing and distinguishing biomolecules based on their surface composition and secondary structure components even in their mixtures, thus paving the way for efficient analysis of complex biological systems.
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Affiliation(s)
- Ashish Kumar Dhillon
- Department of Chemistry, Indian Institute of Technology (IIT) Delhi, Hauz Khas, New Delhi 110016, India
| | - Sanmitra Barman
- Center for Advanced Materials and Devices (CAMD), BML Munjal University, Haryana 122413, India
| | - Soumik Siddhanta
- Department of Chemistry, Indian Institute of Technology (IIT) Delhi, Hauz Khas, New Delhi 110016, India
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Highly sensitive gold nanoparticles-modified silver nanorod arrays for determination of methyl viologen. Mikrochim Acta 2022; 189:479. [DOI: 10.1007/s00604-022-05590-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Accepted: 11/23/2022] [Indexed: 11/29/2022]
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Periodic Copper Microbead Array on Silver Layer for Dual Mode Detection of Glyphosate. OPENNANO 2022. [DOI: 10.1016/j.onano.2022.100105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Balaji R, Maheshwaran S, Chen SM, Tamilalagan E, Chandrasekar N, Ethiraj S, Samuel MS. Fabricating BiOI nanostructures armed catalytic strips for selective electrochemical and SERS detection of pesticide in polluted water. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 296:118754. [PMID: 34973381 DOI: 10.1016/j.envpol.2021.118754] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 12/08/2021] [Accepted: 12/24/2021] [Indexed: 06/14/2023]
Abstract
We have constructed a dual mode catalytic strip equipped with 2D BiOI nanostructures and deployed for dual mode detection sensing of hazardous trichlorophenol (TCP). Synthesized BiOI nanostructures are investigated for its crystal architecture, morphology and chemical composition. The BiOI are loaded onto the catalytic strips with the assistance of gravity offered drying process. The BiOI nanostructures offers a very less charge transfer resistance indicating its superior catalytic properties upon the electrochemical impedance studies. It reflected on providing an excellent limit of detection (LOD) and linear sensing range for TCP in electrochemical mode. For SERS, a thin plasmonic Au layer is sputter coated on BiOI equipped catalytic strips (Au@BiOI) for the TCP detection. An impressive enhancement factor of 107 is obtained for SERS detection of TCP with good LOD of 10-10 M. Fabricated dual mode BiOI based strips are thoroughly examined for operational stability and performance in real time conditions. The fabricated high performance dual mode platform for the detection of hazardous pesticides appears to be a promising prospect for the on-the-spot investigation.
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Affiliation(s)
- Ramachandran Balaji
- Department of Chemical Engineering and Biotechnology, National Taipei University of Technology, Taipei, 106, Taiwan, ROC
| | - Selvarasu Maheshwaran
- Department of Chemical Engineering and Biotechnology, National Taipei University of Technology, Taipei, 106, Taiwan, ROC
| | - Shen-Ming Chen
- Department of Chemical Engineering and Biotechnology, National Taipei University of Technology, Taipei, 106, Taiwan, ROC.
| | - Elayappan Tamilalagan
- Department of Chemical Engineering and Biotechnology, National Taipei University of Technology, Taipei, 106, Taiwan, ROC
| | - Narendhar Chandrasekar
- Department of Nanoscience and Technology, Sri Ramakrishna Engineering College, Coimbatore, Tamil Nadu, India
| | - Selvarajan Ethiraj
- Department of Genetic Engineering, School of Bioengineering, College of Engineering and Technology, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, India
| | - Melvin S Samuel
- Department of Material Science and Engineering, University of Wisconsin-Milwaukee, Milwaukee, WI, USA
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Zhang D, Liang P, Chen W, Tang Z, Li C, Xiao K, Jin S, Ni D, Yu Z. Rapid field trace detection of pesticide residue in food based on surface-enhanced Raman spectroscopy. Mikrochim Acta 2021; 188:370. [PMID: 34622367 DOI: 10.1007/s00604-021-05025-3] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Accepted: 09/19/2021] [Indexed: 12/17/2022]
Abstract
Surface-enhanced Raman spectroscopy is an alternative detection tool for monitoring food security. However, there is still a lack of a conclusion of SERS detection with respect to pesticides and real sample analysis, and the summary of intelligent algorithms in SERS is also a blank. In this review, a comprehensive report of pesticides detection using SERS technology is given. The SERS detection characteristics of different types of pesticides and the influence of substrate on inspection are discussed and compared by the typical ways of classification. The key points, including the progress in real sample analysis and Raman data processing methods with intelligent algorithm, are highlighted. Lastly, major challenges and future research trends of SERS analysis of pesticide residue are also addressed. SERS has been proven to be a powerful technique for rapid test of residue pesticides in complex food matrices, but there still is a tremendous development space for future research.
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Affiliation(s)
- De Zhang
- College of Horticulture & Forestry Sciences, Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China
- College of Optical and Electronic Technology, China Jiliang University, Hangzhou, 310018, China
| | - Pei Liang
- College of Optical and Electronic Technology, China Jiliang University, Hangzhou, 310018, China.
| | - Wenwen Chen
- College of Horticulture & Forestry Sciences, Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China
| | - Zhexiang Tang
- College of Optical and Electronic Technology, China Jiliang University, Hangzhou, 310018, China
| | - Chen Li
- Jiangxi Sericulture and Tea Research Institute, Nanchang, 330203, China
| | - Kunyue Xiao
- College of Horticulture & Forestry Sciences, Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China
| | - Shangzhong Jin
- College of Optical and Electronic Technology, China Jiliang University, Hangzhou, 310018, China
| | - Dejiang Ni
- College of Horticulture & Forestry Sciences, Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China
| | - Zhi Yu
- College of Horticulture & Forestry Sciences, Key Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University, Wuhan, 430070, China.
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Chen R, Xue X, Wang G, Wang J. Determination and dietary intake risk assessment of 14 pesticide residues in apples of China. Food Chem 2021; 351:129266. [PMID: 33639431 DOI: 10.1016/j.foodchem.2021.129266] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Revised: 01/14/2021] [Accepted: 01/30/2021] [Indexed: 12/20/2022]
Abstract
The presence of pesticide residues in apples raises serious health concerns. In this study, a novel, sensitive, high-performance method was developed to simultaneously analyze the residues of 14 pesticides in apples using modified QuEChERS sample pretreatment coupled with ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS). The optimized purification procedure demonstrated satisfactory recovery and precision for all the tested pesticides. The limits of detection (LOD) and quantification (LOQ) values of 14 pesticides in the apple matrix ranged from 0.03 μg/kg to 0.3 μg/kg and 0.1 μg/kg to 1.0 μg/kg, respectively. The proposed method detected six pesticides in the apple samples collected from 20 counties in China's major apple-producing regions. Furthermore, the risk quotient (RQ, %) of the detected pesticides was evaluated by the national estimated acceptable daily intake. The RQs of six pesticides in Chinese people of different age groups were less than 100%.
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Affiliation(s)
- Ru Chen
- Shandong Institute of Pomology, 66 Longtan Rd., Tai'an 271000, China
| | - Xiaomin Xue
- Shandong Institute of Pomology, 66 Longtan Rd., Tai'an 271000, China
| | - Guiping Wang
- Shandong Institute of Pomology, 66 Longtan Rd., Tai'an 271000, China
| | - Jinzheng Wang
- Shandong Institute of Pomology, 66 Longtan Rd., Tai'an 271000, China.
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