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Takei T, Iida A, Nitta K, Tanaka T, Ohnishi Y, Yamada R, Maeda S, Tsunoda T, Takeoka S, Ito K, Honda K, Uchida K, Tsuchiya K, Suzuki Y, Fujioka T, Ujiie T, Nagane Y, Miyano S, Narita I, Gejyo F, Nihei H, Nakamura Y. Association between single-nucleotide polymorphisms in selectin genes and immunoglobulin A nephropathy. Am J Hum Genet 2002; 70:781-6. [PMID: 11828340 PMCID: PMC384956 DOI: 10.1086/339077] [Citation(s) in RCA: 67] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2001] [Accepted: 12/06/2001] [Indexed: 11/04/2022] Open
Abstract
Although intensive efforts have been undertaken to elucidate the genetic background of immunoglobulin A nephropathy (IgAN), genetic factors associated with the pathogenesis of this disease are still not well understood. We designed a case-control association study that was based on linkage disequilibrium among single-nucleotide polymorphisms (SNPs) in the selectin gene cluster on chromosome 1q24-25, and we found two SNPs in the E-selectin gene (SELE8 and SELE13) and six SNPs in the L-selectin gene (SELL1, SELL4, SELL5, SELL6, SELL10, and SELL11) that were significantly associated with IgAN in Japanese patients. All eight SNPs were in almost complete linkage disequilibrium. SELE8 and SELL10 caused amino acid substitutions from His to Tyr and from Pro to Ser (chi2=9.02, P=.0026, odds ratio = 2.73 [95% confidence interval [CI] 1.38--5.38] for His-to-Tyr substitutions; chi2=17.4, P=.000031, odds ratio = 3.61 [95% CI 1.91--6.83] for Pro-to-Ser substitutions), and SELL1 could affect promoter activity of the L-selectin gene (chi2=19.5, P=.000010, odds ratio = 3.77 [95% CI 2.02--7.05]). The TGT haplotype at these three loci was associated significantly with IgAN (chi2=18.67, P=.000016, odds ratio = 1.88 [95% CI 1.41--2.51]). Our results suggest that these eight SNPs in selectin genes may be useful for screening populations susceptible to the IgAN phenotype that involves interstitial infiltration.
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Affiliation(s)
- Takashi Takei
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Aritoshi Iida
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Kosaku Nitta
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Toshihiro Tanaka
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Yozo Ohnishi
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Ryo Yamada
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Shiro Maeda
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Tatsuhiko Tsunoda
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Sachiyo Takeoka
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Kyoko Ito
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Kazuho Honda
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Keiko Uchida
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Ken Tsuchiya
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Yasushi Suzuki
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Tomoaki Fujioka
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Takashi Ujiie
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Yutaka Nagane
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Satoru Miyano
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Ichiei Narita
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Fumitake Gejyo
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Hiroshi Nihei
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
| | - Yusuke Nakamura
- Human Genome Center, The Institute of Medical Science, University of Tokyo, Department of Medicine, Kidney Center, Tokyo Women’s Medical University, Laboratory for Genotyping, Laboratory for Cardiovascular Diseases, Laboratory for Rheumatic Diseases, and Laboratory for Medical Informatics, SNP Research Center, The Institute of Physical and Chemical Research (RIKEN), Tokyo, Japan; Department of Urology, Iwate Medical University, Department of Urology, Iwate Prefectural Ofunato Hospital, and Department of Urology, Sanai Hospital, Iwate, Japan; and Department of Medicine, Niigata University School of Medicine, Niigata, Japan
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