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Akenuwa OH, Gu J, Nebenführ A, Abel SM. Morphometric analysis of actin networks. Mol Biol Cell 2024; 35:ar146. [PMID: 39441713 PMCID: PMC11656467 DOI: 10.1091/mbc.e24-06-0248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2024] [Revised: 10/15/2024] [Accepted: 10/17/2024] [Indexed: 10/25/2024] Open
Abstract
The organization of cytoskeletal elements is pivotal for coordinating intracellular transport in eukaryotic cells. Several quantitative measures based on image analysis have been proposed to characterize morphometric features of fluorescently labeled actin networks. While helpful in detecting differences in actin organization between treatments or genotypes, the accuracy of these measures could not be rigorously assessed due to a lack of ground-truth data to which they could be compared. To overcome this limitation, we utilized coarse-grained computer simulations of actin filaments and cross-linkers to generate synthetic actin networks with varying levels of bundling. We converted the simulated networks into pseudofluorescence images similar to images obtained using confocal microscopy. Using both published and novel analysis procedures, we extracted a series of morphometric parameters and benchmarked them against analogous measures based on the ground-truth actin configurations. Our analysis revealed a set of parameters that reliably reports on actin network density, orientation, ordering, and bundling. Application of these morphometric parameters to root epidermal cells of Arabidopsis thaliana revealed subtle changes in network organization between wild-type and mutant cells. This work provides robust measures that can be used to quantify features of actin networks and characterize changes in actin organization for different experimental conditions.
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Affiliation(s)
- Oghosa H. Akenuwa
- Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, TN 37996
| | - Jinmo Gu
- Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996
| | - Andreas Nebenführ
- Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996
| | - Steven M. Abel
- Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, TN 37996
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Sharma A, Chandran D. Host nuclear repositioning and actin polarization towards the site of penetration precedes fungal ingress during compatible pea-powdery mildew interactions. PLANTA 2022; 256:45. [PMID: 35864318 DOI: 10.1007/s00425-022-03959-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Accepted: 07/06/2022] [Indexed: 06/15/2023]
Abstract
MAIN CONCLUSION Actin polarization and actin-driven host nuclear movement towards the fungal penetration site facilitates successful host colonization during compatible pea-Erysiphe pisi interactions. Proper nuclear positioning in plant cells is crucial for developmental processes and response to (a)biotic stimuli. During plant-fungal interactions, the host nucleus moves toward the infection site, a process regulated by the plant cytoskeleton. Notably, rearrangement of the plant cytoskeleton is one of the earliest cellular responses to pathogen invasion and is known to impact penetration efficiency. Yet, the connection between host nuclear movement and fungal ingress is still elusive, particularly in legumes. Here, we investigated the host nuclear dynamics during compatible interactions between Pisum sativum (pea) and the adapted powdery mildew (PM) fungus Erysiphe pisi to gain insights into the functional relevance of PM-induced nuclear movement in legumes. We show that the host nucleus moves towards the fungal appressorium before penetration and becomes associated with the primary haustorium. However, the nucleus migrates away from the primary infection site as the infection progresses toward colony expansion and sporulation. Treatment of pea leaves with the actin-polymerization inhibitor, cytochalasin D, abolished host nuclear movement towards the fungal penetration site and restricted PM growth. In contrast, treatment with oryzalin, a microtubule-polymerization inhibitor, had no effect. In addition to nuclear movement, strong polarization of host actin filaments towards the site of appressorial contact was evident at early infection stages. Our results suggest that actin focusing mediates host nuclear movement to the fungal penetration site and facilitates successful colonization during compatible pea-PM interactions.
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Affiliation(s)
- Akriti Sharma
- Laboratory of Plant-Microbe Interactions, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, 121001, Haryana, India
| | - Divya Chandran
- Laboratory of Plant-Microbe Interactions, Regional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, 121001, Haryana, India.
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Li J, Staiger CJ. Understanding Cytoskeletal Dynamics During the Plant Immune Response. ANNUAL REVIEW OF PHYTOPATHOLOGY 2018; 56:513-533. [PMID: 29975609 DOI: 10.1146/annurev-phyto-080516-035632] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The plant cytoskeleton is a dynamic framework of cytoplasmic filaments that rearranges as the needs of the cell change during growth and development. Incessant turnover mechanisms allow these networks to be rapidly redeployed in defense of host cytoplasm against microbial invaders. Both chemical and mechanical stimuli are recognized as danger signals to the plant, and these are perceived and transduced into cytoskeletal dynamics and architecture changes through a collection of well-recognized, previously characterized players. Recent advances in quantitative cell biology approaches, along with the powerful molecular genetics techniques associated with Arabidopsis, have uncovered two actin-binding proteins as key intermediaries in the immune response to phytopathogens and defense signaling. Certain bacterial phytopathogens have adapted to the cytoskeletal-based defense mechanism during the basal immune response and have evolved effector proteins that target actin filaments and microtubules to subvert transcriptional reprogramming, secretion of defense-related proteins, and cell wall-based defenses. In this review, we describe current knowledge about host cytoskeletal dynamics operating at the crossroads of the molecular and cellular arms race between microbes and plants.
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Affiliation(s)
- Jiejie Li
- Department of Biological Sciences and Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907, USA;
- Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Science, Beijing Normal University, Beijing 100875, China
| | - Christopher J Staiger
- Department of Biological Sciences and Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907, USA;
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Higaki T. Quantitative evaluation of cytoskeletal organizations by microscopic image analysis. ACTA ACUST UNITED AC 2017. [DOI: 10.5685/plmorphol.29.15] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Affiliation(s)
- Takumi Higaki
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo
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Affiliation(s)
- Noriko Inada
- The Graduate School of Biological Sciences, Nara Institute of Science and Technology
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Shimono M, Higaki T, Kaku H, Shibuya N, Hasezawa S, Day B. Quantitative Evaluation of Stomatal Cytoskeletal Patterns during the Activation of Immune Signaling in Arabidopsis thaliana. PLoS One 2016; 11:e0159291. [PMID: 27415815 PMCID: PMC4944930 DOI: 10.1371/journal.pone.0159291] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2016] [Accepted: 06/30/2016] [Indexed: 12/02/2022] Open
Abstract
Historically viewed as primarily functioning in the regulation of gas and water vapor exchange, it is now evident that stomata serve an important role in plant immunity. Indeed, in addition to classically defined functions related to cell architecture and movement, the actin cytoskeleton has emerged as a central component of the plant immune system, underpinning not only processes related to cell shape and movement, but also receptor activation and signaling. Using high resolution quantitative imaging techniques, the temporal and spatial changes in the actin microfilament array during diurnal cycling of stomatal guard cells has revealed a highly orchestrated transition from random arrays to ordered bundled filaments. While recent studies have demonstrated that plant stomata close in response to pathogen infection, an evaluation of stimulus-induced changes in actin cytoskeletal dynamics during immune activation in the guard cell, as well as the relationship of these changes to the function of the actin cytoskeleton and stomatal aperture, remains undefined. In the current study, we employed quantitative cell imaging and hierarchical clustering analyses to define the response of the guard cell actin cytoskeleton to pathogen infection and the elicitation of immune signaling. Using this approach, we demonstrate that stomatal-localized actin filaments respond rapidly, and specifically, to both bacterial phytopathogens and purified pathogen elicitors. Notably, we demonstrate that higher order temporal and spatial changes in the filament array show distinct patterns of organization during immune activation, and that changes in the naïve diurnal oscillations of guard cell actin filaments are perturbed by pathogens, and that these changes parallel pathogen-induced stomatal gating. The data presented herein demonstrate the application of a highly tractable and quantifiable method to assign transitions in actin filament organization to the activation of immune signaling in plants.
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Affiliation(s)
- Masaki Shimono
- Department of Plant, Soil, and Microbial Sciences, 1066 Bogue Street A286, Michigan State University, East Lansing, Michigan, 48824, United States of America
| | - Takumi Higaki
- Department of Integrated Biosciences, The University of Tokyo, Kashiwanoha 5-1-5, Kashiwa, Chiba, 277–8562, Japan
| | - Hanae Kaku
- Department of Life Sciences, School of Agriculture, Meiji University, 1-1-1 Higashimita, Tama-Ku, Kawasaki, 214–8571, Japan
| | - Naoto Shibuya
- Department of Life Sciences, School of Agriculture, Meiji University, 1-1-1 Higashimita, Tama-Ku, Kawasaki, 214–8571, Japan
| | - Seiichiro Hasezawa
- Department of Integrated Biosciences, The University of Tokyo, Kashiwanoha 5-1-5, Kashiwa, Chiba, 277–8562, Japan
| | - Brad Day
- Department of Plant, Soil, and Microbial Sciences, 1066 Bogue Street A286, Michigan State University, East Lansing, Michigan, 48824, United States of America
- Graduate Program in Genetics, 2240E Biomedical Physical Sciences, Michigan State University, East Lansing, Michigan, 48824, United States of America
- Graduate Program in Cell and Molecular Biology, 2240A Biomedical Physical Sciences, Michigan State University, East Lansing, Michigan, 48824, United States of America
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Inada N. Visualization of Host Actin Microfilament Dynamicity upon Obligate Biotrophic Pathogen Infection. CYTOLOGIA 2016. [DOI: 10.1508/cytologia.81.119] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- Noriko Inada
- Graduate School of Biological Sciences, Nara Institute of Science and Technology
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