Fecal pollution in coastal marine sediments from a semi-enclosed deep embayment subjected to anthropogenic activities: an issue to be considered in environmental quality management frameworks development

Spatiotemporal BME characterization and mapping of sea surface chlorophyll in Chesapeake Bay (USA) using auxiliary sea surface temperature data

Improving the spatiotemporal coverage of remote sensing (RS) products, such as sea surface chlorophyll concentration (SSCC), can offer a better understanding of the spatiotemporal SSCC distribution for ocean management purposes. In the first part of this work, 834 in-situ SSCC measurements of the SeaBASS-NASA (National Aeronautics and Space Administration) during 2002-2016 served as the empirical dataset. A moving window with ±3 days and ±0.5° centered at each of the in-situ SSCC measurements established a search neighborhood for Moderate Resolution Imaging Spectroradiometer Level 2 (MODIS L2) SSCC and MODIS L2 sea surface temperature (SST) data, and the matched SSCC and SST data were used for building a linear SSCC-SST relationship. The unmatched SST was introduced to the linear model for generating soft SSCC data with uniform distributions. The inherent spatiotemporal dependency of the SSCC distribution was then represented by the Bayesian maximum entropy (BME) method, which incorporated the soft SSCC data as auxiliary variable for SSCC estimation and mapping purposes. The results showed that a 75.3% accuracy improvement of remote SSCC retrieval in terms of R² can be achieved by BME-based method compared to the original MODIS L2 product. Subsequently, the BME-based method was applied to obtain daily SSCC dataset in Chesapeake Bay (USA) during the period 2010-2019. It was found that the SSCC distribution exhibited a decreasing spatial trend from the upper bay to the outer bay, whereas decreasing and increasing temporal trends were detected during the periods 2011-2014 and 2016-2019, respectively. The generalized Cauchy process was used to quantitatively describe the autocorrelation SSCC function in the Chesapeake Bay. The results showed that the outer bay exhibited the strongest long-range dependence among the four sub-regions, whereas the middle bay exhibited the weakest long-range dependence. Finally, one-point and two-point stochastic site indicators (SSIs) were employed to explore the spatiotemporal SSCC characteristics in Chesapeake Bay. The one-point SSI results showed that nearly 100% of the upper, middle and the lower bay areas experienced a high SSCC level (>5 mg/m³) during the entire study period. The area with SSCC >5 mg/m³ in the outer bay increased a lot during the winter season, but the area with SSCC >10 or 20 mg/m³ decreased significantly in the upper, middle and lower bay. Simultaneously, the SSCC dispersion in these areas was rather small during the winter season. On the other hand, the two-point SSI results showed that although the SSCC levels differ among the four sub-regions, but the SSCC connectivity structures between pairs of points also displayed some similarities in terms of their spatiotemporal dependency. In conclusion, the proposed BME-based method was shown to be a promising remote SSCC mapping technique that exhibited a powerful ability to improve both accuracy and coverage of RS products. The SSIs can be also used to explore the spatiotemporal characteristics of a variety of natural attributes in waters.

Multi-generational impacts of organic contaminated stream water on Daphnia magna: A combined proteomics, epigenetics and ecotoxicity approach

The present study aimed to elucidate the mechanisms of organismal sensitivity and/or physiological adaptation in the contaminated water environment. Multigenerational cultures (F0, F1, F2) of Daphnia magna in collected stream water (OCSW), contaminated with high fecal coliform, altered the reproductive scenario (changes in first brood size timing, clutch numbers, clutch size etc.), compromised fitness (increase hemoglobin, alteration in behavior), and affected global DNA methylation (hypermethylation) without affecting survival. Using proteomics approach, we found 288 proteins in F0 and 139 proteins in F2 that were significantly differentially upregulated after OCSW exposure. The individual protein expressions, biological processes and molecular functions were mainly related to metabolic processes, development and reproduction, transport (protein/lipid/oxygen), antioxidant activity, increased globin and S-adenosylmethionine synthase protein level etc., which was further found to be connected to phenotype-dependent endpoints. The proteomics pathway analysis evoked proteasome, chaperone family proteins, neuronal disease pathways (such as, Parkinson's disease) and apoptosis signaling pathways in OCSW-F0, which might be the cause of behavioral and developmental alterations in OCSW-F0. Finally, chronic multigenerational exposure to OCSW exhibited slow physiological adaptation in most of the measured effects, including proteomics analysis, from the F0 to F2 generations. The common upregulated proteins in both generations (F0 & F2), such as, globin, vitellinogen, lipid transport proteins etc., were possibly play the pivotal role in the organism's physiological adaptation. Taken together, our results, obtained with a multilevel approach, provide new insight of the molecular mechanism in fecal coliform-induced phenotypic plasticity in Daphnia magna.

River water analysis using a multiparametric approach: Portuguese river as a case study

The Ave River in northern Portugal has a history of riverbanks and water quality degradation. The river water quality was assessed by physicochemical, biological (macroinvertebrates) and microbiological (Enterococcus spp. and Escherichia coli) parameters in six locations (A-F, point A being the nearest to the source) throughout its course during a year. Epilithic biofilms were studied through polymerase chain reaction denaturing gradient gel electrophoresis (PCR-DGGE). Antimicrobial susceptibility testing helped with selecting isolates (n = 149 E. coli and n = 86 enterococci) for further genetic characterization. Pursuant to physicochemical and macroinvertebrates-based parameters, the river water was of reasonable quality according to European legislation (Directive 2000/60/EC). However, the microbiological analysis showed increased fecal contamination downstream from point C. At point D, four carbapenem-resistant E. coli isolates were recovered. Paradoxically, point D was classified as a point of 'Good Water Quality' according to macroinvertebrates results. Point F presented the highest contamination level and incidence of multidrug-resistant (MDR) isolates in the water column (13 MDR enterococci out of 39 and 33 MDR E. coli out of 97). Epilithic biofilms showed higher diversity in pristine points (A and B). Thus, biological and microbiological parameters used to assess the water quality led to divergent results; an outcome that reinforces the need for a holistic evaluation.

Coastal microbial quality of surface sediments in different environments along the Italian coast

In order to improve sediment handling following dredging operations, this study aims to statistically derive ranges of distribution for certain microbiological parameters, according to four environmental types inspired by Italian legislation on seaports: ports of international/national importance, ports of regional importance, port channels in brackish environments, and marine coastal areas. A national database was developed using microbiological data from technical reports available at the Italian Ministry of Environment and National Institute of Environmental Protection and Research (ISPRA) for the period 1990-2008. The parameters considered were total coliform bacteria, faecal coliform bacteria, Escherichia coli, enterococci, sulfite-reducing clostridia (SRC), total bacterial counts at 22 °C and at 37 °C, and fungi. The data were statistically analyzed: (1) to verify the correspondence with the identified environmental types and rank them according to the concentration gradient and (2) to describe the data distribution in order to obtain reference ranges typical for each parameter/environmental type. The four environmental types considered were clearly different for enterococci, SRC, and fungi, highlighting a correspondence with Italian legislation. For the remaining parameters, at least two environmental types were merged. In general, the less contaminated environments were small ports and relatively unimpacted coastal areas. The ranges defined for relatively clean coastal areas can be considered a target for other areas both from an environmental point of view and for the sediment management implications. These values could be used as a comparison in environmental surveys addressing marine or brackish sediment handling and may represent a future line of evidence for the assessment of overall sediment quality.

Epidemic Escherichia coli ST131 and Enterococcus faecium ST17 in coastal marine sediments from an Italian beach

Fecal indicator bacteria (FIB) are used worldwide to assess water quality in coastal environments, but little is known about their genetic diversity and pathogenicity. This study examines the prevalence, antimicrobial resistance, virulence, and genetic diversity of FIB isolated from marine sediments from a central Adriatic seaside resort. FIB, recovered from 6 out of 7 sites, were significantly more abundant at sampling stations 300 m offshore than close to the shore. Escherichia coli accounted for 34.5% of fecal coliforms, and Enterococcus faecalis accounted for 32% of enterococci. Most isolates (27% of E. coli and 22% of enterococci) were recovered from the sediments that had the highest organic content. Multidrug-resistant E. coli (31%) and enterococci (22%) were found at nearly all sites, whereas 34.5% of E. coli and 28% of enterococci harboring multiple virulence factors were recovered from just two sites. Pulsed-field gel electrophoresis typing showed wide genetic diversity among isolates. Human epidemic clones ( E. coli ST131 and Enterococcus faecium ST17) were identified for the first time by multilocus sequence typing in an area where bathing had not been prohibited. These clones were from sites far removed from riverine inputs, suggesting a wide diffusion of pathogenic FIB in the coastal environment and a high public health risk.

Metal contamination in water, sediment and biota from a semi-enclosed coastal area

This study identifies and quantifies the spatial variations of metal contamination in water, sediment and biota: the common cockle (Cerastoderma edule) and the Mermaid's glove sponge (Haliclona oculata), within a heavily anthropogenically impacted semi-enclosed estuarine-coastal area with a low ability to disperse and flush contaminants (Poole Harbour, UK). The results showed that metal contamination was detected in all environmental compartments. Water was polluted with As, and Hg sediment metals were mostly within "the possible effect range" in which adverse effects occasionally occurs. Cockles had considerable concentrations of Ni, Ag and Hg in areas close to pollution sources, and sponges accumulate Cu and Zn with very high magnitude. A systematic monitoring approach that includes biological monitoring techniques, which covers all embayments, is needed, and an integrated management of the semi-enclosed coastal zones should be based on the overall hydrological characteristics of these sensitive areas and their ability to self-restore which is different than open coastal zones.

Pollution impacts on bacterioplankton diversity in a tropical urban coastal lagoon system

Despite a great number of published studies addressing estuarine, freshwater and marine bacterial diversity, few have examined urban coastal lagoons in tropical habitats. There is an increasing interest in monitoring opportunistic pathogens as well as indigenous microbial community members in these water bodies by current molecular and microbiological approaches. In this work, bacterial isolates were obtained through selective plate dilution methods to evaluate antibiotic resistances. In addition, 16S rRNA gene libraries were prepared from environmental waters and mixed cultures grown in BHI medium inoculated with Jacarepaguá lagoon waters. Denaturing gradient gel electrophoresis (DGGE) analyses showed distinct community profiles between environmental communities from each studied site and their cultured counterparts. A total of 497 bacterial sequences were analyzed by MOTHUR, yielding 245 operational taxonomic units (OTUs) grouped at 97% similarity. CCA diagrams showcased how several environmental variables affect the distribution of 18 bacterial orders throughout the three distinct habitats. UniFrac metrics and Venn diagrams revealed that bacterial communities retrieved through each experimental approach were significantly different and that only one OTU, closely related to Vibrio cholerae, was shared between them. Potentially pathogenic bacteria were isolated from most sampled environments, fifty percent of which showed antibiotic resistance.