Invasive and flexible: niche shift in the drosophilid Zaprionus indianus (Insecta, Diptera)

Variability and General Trends in the Geographic Distribution and Climatic Niche of Endemic and Cosmopolitan Drosophilidae Species in Subtropical Regions of the Neotropics

The Neotropical region is a vast and heterogeneous ecozone harboring diverse Drosophilidae Fallén 1823 species. However, these species' distribution patterns and climatic requirements are poorly understood. In this study, we aimed to estimate differences in the climatic niche and distribution patterns among species to test the hypothesis that endemic and cosmopolitan species occurring in the Neotropics present different climatic niches, such that distribution range and niche breadth are highly correlated among species. For this task, we evaluated the geographic distributions and the climatic niches of 47 endemic and cosmopolitan drosophilids occurring in subtropical regions of the Neotropics using raw climatic data from collection records and environmental niche models (ENMs). We showed that the studied species varied in two highly correlated properties: the distribution ranges and the environmental niche breadth. Moreover, significant differences were observed between endemic and cosmopolitan drosophilids in terms of variable importance and climatic niches. Most of the studied species are distributed in regions under mild climatic conditions, but there are many species inhabiting harsher environments. Generally, the results suggest that several Neotropical drosophilid species may be highly vulnerable to global warming, potentially serving as bioindicator species for assessing the impact of climate change.

Limited population structure but signals of recent selection in introduced African Fig Fly (Zaprionus indianus) in North America

Invasive species have devastating consequences for human health, food security, and the environment. Many invasive species adapt to new ecological niches following invasion, but little is known about the early steps of adaptation. Here we examine population genomics of a recently introduced drosophilid in North America, the African Fig Fly, Zaprionus indianus. This species is likely intolerant of subfreezing temperatures and recolonizes temperate environments yearly. We generated a new chromosome-level genome assembly for Z. indianus. Using resequencing of over 200 North American individuals collected over four years in temperate Virginia, plus a single collection from subtropical Florida, we tested for signatures of recolonization, population structure, and adaptation within invasive populations. We show founding populations are sometimes small and contain close genetic relatives, yet temporal population structure and differentiation of populations is mostly absent across recurrent recolonization events. Although we find limited signals of genome-wide spatial or temporal population structure, we identify haplotypes on the X chromosome that are repeatedly differentiated between Virginia and Florida populations. These haplotypes show signatures of natural selection and are not found in African populations. We also find evidence for several large structural polymorphisms segregating within North America populations and show X chromosome evolution in invasive populations is strikingly different from the autosomes. These results show that despite limited population structure, populations may rapidly evolve genetic differences early in an invasion. Further uncovering how these genomic regions influence invasive potential and success in new environments will advance our understanding of how organisms evolve in changing environments.

Establishment and Expansion Scenario of Drosophila suzukii (Diptera: Drosophilidae) in Central Brazil

Drosophila suzukii Matsumura (Diptera: Drosophilidae), also known as spotted wing drosophila (SWD), is an important pest that damages various wild and cultivated soft fruits worldwide, especially in the Northern Hemisphere. In Brazil, it occurs mainly in the subtropical climates of the southern and southeastern regions. However, SWD has also been sporadically found in the central region of the country in the natural vegetation of the tropical Brazilian Savanna. In this study, we investigated the occurrence of SWD at the northern limit of its range in South America - the central region of Brazil - by monitoring an established drosophilid community in an orchard located in the Brazilian Federal District. We also investigated the current geographical distribution of this pest in Brazil and its potential geographical distribution using species distribution models under two different future shared socioeconomic pathways scenarios (2040 and 2060, optimist and pessimist). Twenty drosophilid species were detected among the 6,396 captured specimens, most of which are exotic in the Neotropical region. The fly community greatly fluctuated throughout the year, and the highest abundance of SWD (3.5% relative abundance and 1.38 flies/trap/day) was recorded in April during the rainy season. Potential distribution models indicate that suitable areas for SWD spread will decrease in the south and southeast but increase in the central region of Brazil. We recommend continuous SWD monitoring and improving bioclimatic forecast models for mitigating damage to local fruit production.

Opening the floodgates for invasion-modelling the distribution dynamics of invasive alien fishes in India

Invasive alien species have become the second major threat to biodiversity affecting all three major ecosystems (terrestrial, marine, and freshwater). Increasing drivers such as habitat destruction, expanding horticulture and aquaculture industries, and global pet and food trade have created pathways for exotic species to be introduced leading to severe impacts on recipient ecosystems. Although relatively less studied than terrestrial ecosystems, freshwater ecosystems are highly susceptible to biological invasions. In India, there has been a noticeable increase in the introduction of alien fish species in freshwater environments. In the current study, we aimed to understand how climate change can affect the dynamics of the biological invasion of invasive alien fishes in India. We also evaluated the river-linking project's impact on the homogenization of biota in Indian freshwater bodies. We used species occurrence records with selected environmental variables to assess vulnerable locations for current and future biological invasion using species distribution models. Our study has identified and mapped the vulnerable regions to invasion in India. Our research indicates that the interlinking of rivers connects susceptible regions housing endangered fish species with invasive hotspots. Invasive alien fishes from the source basin may invade vulnerable basins and compete with the native species. Based on the results, we discuss some of the key areas for the management of these invasive alien species in the freshwater ecosystems.

Putative source and niche shift pattern of a new alien ant species (Odontomachus troglodytes) in Taiwan

Alien species may pose substantial impacts on biodiversity around the globe through international trade and travel. A niche shift hypothesis was proposed to explain the adaptive change of alien or invasive species in new habitats. However, whether niche shifts occur in alien species likely depends on both characteristics inherent to the species itself and its original distribution. Here we identified a newly exotic trap-jaw ant (Odontomachus troglodytes) in Taiwan by morphological and phylogenetic analyses. The possible distribution range and the niche shift pattern were evaluated using ecological niche modelling. The results indicated that exotic O. troglodytes in the newly distributed area displayed a significant niche shift with low niche overlap and high niche expansion. This study reveals a long-distance invasive event from central Africa to Southeast Asia (more than 10,000 km) and predicts the potential distribution range of this new alien species in Taiwan.

Fuzzy AHP-based spatial distribution of fig tree cultivation in Zaprionus indianus infection risk for sustainable agriculture development

The spatial distribution of fig trees infected by Zaprionus indianus (ZI) disease, an invasive pest, was analyzed as a control solution to determine the prone area of their growth and cultivation prevention in Southwest Iran. With this aim, the study presented the use of 9 suitability variables for fig tree cultivation mapping in 3 main steps: (i) pre-processing data of each input variable with fuzzy membership function, (ii) land suitability mapping (LSM) by using the pair-wise comparison matrix of analytical hierarchy process (AHP) method and Geographical Information System (GIS) technique, (iii) exclusion layers of Zaprionus indianus from the temperature data and growing degree days (GDD) (from April to October) with the support of inverse distance weighting (IDW) method. The results show that the central regions and parts of the east and northwest of the region (16%) are more suitable for fig cultivation. Compared to 7 growth periods, the insect is more active in the southern parts of the region than in the northern parts. Therefore, it is possible to cultivate figs with high yield in parts of the region where the land is suitable for growing this crop with the lowest activity of ZI. The overlay results show that the suitability distribution of fig cultivation in high and very high levels is mainly in the central regions (13,300 km2, 10%), parts of the east (5320 km2, 4%), and northwest (2660 km2, 2%) of the region. The proposed approach can be useful for management, planners, and local people in the development of agricultural production areas.

More time for aliens? Performance shifts lead to increased activity time budgets propelling invasion success

In the Grinnellian niche concept, the realized niche and potential distribution is characterized as an interplay among the fundamental niche, biotic interactions and geographic accessibility. Climate is one of the main drivers for this concept and is essential to predict a taxon’s distribution. Mechanistic approaches can be useful tools, which use fitness-related aspects like locomotor performance and critical thermal limits to predict the potential distribution of an organism. These mechanistic approaches allow the inclusion key ecological processes like local adaptation and can account for thermal performance traits of different life-history stages. The African Clawed Frog, Xenopus laevis, is a highly invasive species occurring on five continents. The French population is of special interest due to an ongoing expansion for 40 years and a broad base of knowledge. We hypothesize that (1) the French population exhibits increased activity time in the invasive European range that could be devoted to fitness-relevant activity and (2) tadpoles may have less activity time available than adult frogs from the same range. We investigate how thermal performance traits translate into activity time budgets and how local adaptation and differences in the thermal responses of life-history stages may boost the European Xenopus invasion. We use a mechanistic approach based on generalized additive mixed models, where thermal performance curves were used to predict the hours of activity and to compare the potential activity time budgets for two life-history stages of native and invasive populations. Our results show that adult French frogs have more activity time available in Europe compared to South African frogs, which might be an advantage in searching for prey or escaping from predators. However, French tadpoles do not have more activity time in Europe compared to the native South African populations suggesting that tadpoles do not suffer the same strong selective pressure as adult frogs.

First Records of the Invading Species Drosophila Nasuta (Diptera: Drosophilidae) in the Amazon

Invading species pose a growing threat to biodiversity, ecosystemic systems, regional economies, and public health. In recent decades, South America has received five exotic drosophilids species, some of which have invaded natural ecosystems and caused harm to agriculture. The most recent case is the Asian fly Drosophila nasuta Lamb. In the present study, we record D. nasuta in the Amazon, which is the largest and most biodiverse tropical rainforest in the world. Sampling of drosophilids was carried out between 2012 and 2017 in the Brazilian state of Pará. Drosophila nasuta was first detected on 1^st July 2017, with 145 individuals of this species sampled among the 11,496 drosophilids caught. Although at low abundance, D. nasuta was recorded in forest fragments, anthropized fields, and urban environment. The records of the species occurred in the six municipalities of the state of Pará investigated at locations separated by approximately 700 km. In less than 10 years, D. nasuta has occupied approximately 2.5 million km² in South America. The present findings assist in understanding the susceptibility of tropical forests to biological invasions.

Pest categorisation of Zaprionus indianus

The EFSA Panel on Plant Health performed a pest categorisation of Zaprionus indianus (Diptera: Drosophilidae), the African fig fly for the territory of the EU. This species successfully colonised the Indian subcontinent more than four decades ago, and more recently South and North America. Within the EU, the pest occurs in Cyprus, Malta, Portugal (Madeira) and Spain (Canary Islands and Andalusia). Z. indianus is not listed in Annex II of Commission Implementing Regulation (EU) 2019/2072. The larvae of this fly feed on more than 80 plant species both cultivated and non-cultivated. Females produce around 60-70 eggs. Egg laying mostly occurs in decaying fruit or fruit with injuries or mechanical damage. However, Z. indianus can oviposit on undamaged healthy fruit such as figs, strawberries and guavas which provide a potential pathway for entry into the EU. Lower temperature thresholds are around 9-10°C. Optimum development occurs at 28°C. The number of generations per year varies from 12 to 16. Climatic conditions in many EU member states and host plant availability in those areas are conducive for establishment. The introduction of Z. indianus is expected to have an economic impact in the EU especially on fig and strawberry production. Damage caused by other fruit flies (Drosophilidae and Tephritidae) could be increased by mixed infestations. Phytosanitary measures are available to reduce the likelihood of entry and further spread. Z. indianus satisfies all of the criteria that are within the remit of EFSA to assess for it to be regarded as a potential Union quarantine pest.

Current and future potential global distribution of the invading species Drosophila nasuta (Diptera: Drosophilidae)

Species distribution modelling has been widely employed to indicate probable areas of invasion and to guide management strategies. Drosophila nasuta is native to Asia and has invaded Africa, islands of the Indian and Pacific Oceans and, more recently, the Americas. This species has been dispersing rapidly in the past decade, dominating the assemblage of drosophilids in numerous invaded territories, especially in protected areas. Here, we model the potential geographic distribution of D. nasuta for the present and two future scenarios. We also determine the environmental variables that most influence its distribution and investigate the risk of invasion in protected areas. Drosophila nasuta has the potential to expand its occurrence, especially on continents that have already been invaded. Variables related to greater rainfall were those that most influenced its distribution. The projections for the two future scenarios revealed a small increase in the distribution of the species compared to the projection for the present. The largest overlaps between the projected areas to be invaded by D. nasuta and territories in protected areas were found for Central and South America. The predictive maps delineated here can assist in the establishment of management plans directed at the conservation of biodiversity.

Continuous expansion of the geographic range linked to realized niche expansion in the invasive Mourning gecko Lepidodactylus lugubris (Duméril & Bibron, 1836)

Lepidodactylus lugubris is a parthenogenetic gecko which has been increasingly expanding its range during the last century. This invasive species has been reported from multiple tropical and subtropical countries in five continents, most of which were colonized in recent times. In order to understand how the realized niche of the species was affected by this dramatic geographic range expansion, we reconstructed the history of the geographic range expansion. We built models of the realized niche of the species at different points in time during the invasion process. This was achieved through the implementation of modern hypervolume construction methods, based on the Hutchinson's niche concept. The models were then compared to detect possible realized climatic niche expansion over time. Furthermore, we investigated possible pathways used by the species to spread. A progressive expansion of the realized niche was identified. As the species spread into new areas, we observed a tendency to colonize regions with warmer temperatures and higher precipitation rates. Finally, we found evidence for cargo shipping being the major pathway through which the species expands its range. Further studies on this topic should aim to investigate the role of biological interactions, and how they shape the distribution of L. lugubris on a global scale. A deeper understanding of this kind of processes will help us tackle the issue of invasive species, which has become a major challenge in conservation biology.

Brown Rice Vinegar as an Olfactory Field Attractant for Drosophila suzukii (Matsumura) and Zaprionus indianus Gupta (Diptera: Drosophilidae) in Cherimoya in Maui, Hawaii, with Implications for Attractant Specificity between Species and Estimation of Relative Abundance

Drosophila suzukii (Matsumura) is an agricultural pest that has been observed co-infesting soft-skinned fruits with Zaprionus indianus Gupta. The characterization of olfactory preferences by species is a necessary step towards the development of species-specific attractants. Five olfactory attractants were used to survey the populations of two invasive drosophilids in cherimoya in Maui, Hawaii. The attractants used were apple cider vinegar (ACV), brown rice vinegar (BRV), red wine (RW), apple cider vinegar and red wine (ACV+RW; 60/40), and brown rice vinegar and red wine (BRV+RW; 60/40). For D. suzukii, BRV+RW resulted in more captures than BRV, ACV, and RW, while ACV+RW resulted in more captures than ACV. No differences were observed between BRV+RW and ACV+RW. BRV had greater specificity in attracting D. suzukii compared to ACV, ACV+RW, and RW. For Z. indianus, no significant differences were observed in either the mean captures or specificity for any attractant used. Collectively, these findings demonstrate that (1) BRV and BRV+RW are effective field attractants and (2) D. suzukii has unique olfactory preferences compared to non-target drosophilids, while (3) Z. indianus’ preferences do not appear to vary from non-target drosophilids, and (4) the accuracy of relative abundance is impacted by the specificity of the attractants.

Evidence of niche shift and invasion potential of Lithobates catesbeianus in the habitat of Mexican endemic frogs

Invasive alien species are one of most severe threats to biodiversity and natural resources. These biological invasions have been studied from the niche conservatism and niche shifts perspective. Niche differentiation may result from changes in fundamental niche or realized niche or both; in biological invasions, niche differences between native and non-native ranges can appear through niche expansion, niche unfilling and niche stability. The American bullfrog Lithobates catesbeianus is an invasive species that can have negative impacts on native amphibian populations. This research examines the climate niche shifts of this frog, its potential range of expansion in Mexico and the risk of invasion by bullfrog in the habitats of 82 frog species endemic to Mexico, that based on their climatic niche similarity were divided in four ecological groups. The results indicate that species in two ecological groups were the most vulnerable to invasion by bullfrog. However, the climate niche shifts of L. catesbeianus may allow it to adapt to new environmental conditions, so species from the two remaining groups cannot be dismissed as not vulnerable. This information is valuable for decision making in prioritizing areas for conservation of Mexican endemic frogs.

High Diversity of Drosophilidae in High-Altitude Wet Forests in Northeastern Brazil

The high-altitude wet forests of northeastern Brazil, locally known as "Brejos de Altitude," are enclaves of the Atlantic Forest situated above 500 m, surrounded by dryland vegetation, the Caatinga. The aim of this study was to characterize drosophilid communities in these upland forests, since few ecological studies on drosophilid communities have been conducted in northeastern Brazil. Four sites were investigated in three different times of the year throughout standardized traps. The results reveal the presence of 55 different species in a total of 13,064 specimens collected. The data were evaluated using ecological diversity measurements and compared with those obtained for other environments in the same geographic region. As for species composition, the Bonito upland forest, in a boundary forest location, stood out as having high species richness.

The bud midge Prodiplosis longifila: Damage characteristics, potential distribution and presence on a new crop host in Colombia

The Dipteran Prodiplosis longifila is a severe pest, mainly of Solanaceae, in South America and some years ago it damaged Tahiti lime crops in the United States. It is a potential invasive pest. Despite its presence in Colombia, nothing is known regarding the taxonomic identification of P. longifila or the characteristics of the damage it produces. Moreover, the current and potential distributions of this pest are unknown. To determine these factors, P. longifila was sampled in several Solanaceae- and Citrus (x) latifolia (Tahiti lime)-producing areas in Colombia. The larvae consumed tender foliage, flowers and fruits in tomato, fruits in sweet pepper, and buds in Tahiti lime. P. longifila was not found in asparagus or in potatoes. Its presence in Tahiti lime was previously unknown in Colombia. Adults recovered in the laboratory were taxonomically identified using male morphological characteristics such as the shapes of the genitalia, antenna and wing. P. longifila was found in the Andean region of Colombia. The ecological niche model for populations found in tomato suggests that P. longifila is limited in its distribution by altitude and variables associated with temperature and precipitation. The highest probability of occurrence is in areas where tomato, sweet pepper and the new host, Tahiti lime, are grown. Therefore, it is necessary to implement preventive measures, such as planting tomato materials free of P. longifila larvae, in areas where the pest is not yet present but where there is the potential for its development.

Realized niche shift during a global biological invasion

Accurate forecasts of biological invasions are crucial for managing invasion risk but are hampered by niche shifts resulting from evolved environmental tolerances (fundamental niche shifts) or the presence of novel biotic and abiotic conditions in the invaded range (realized niche shifts). Distinguishing between these kinds of niche shifts is impossible with traditional, correlative approaches to invasion forecasts, which exclusively consider the realized niche. Here we overcome this challenge by combining a physiologically mechanistic model of the fundamental niche with correlative models based on the realized niche to study the global invasion of the cane toad Rhinella marina. We find strong evidence that the success of R. marina in Australia reflects a shift in the species' realized niche, as opposed to evolutionary shifts in range-limiting traits. Our results demonstrate that R. marina does not fill its fundamental niche in its native South American range and that areas of niche unfilling coincide with the presence of a closely related species with which R. marina hybridizes. Conversely, in Australia, where coevolved taxa are absent, R. marina largely fills its fundamental niche in areas behind the invasion front. The general approach taken here of contrasting fundamental and realized niche models provides key insights into the role of biotic interactions in shaping range limits and can inform effective management strategies not only for invasive species but also for assisted colonization under climate change.

Rapid life-history diversification of an introduced fish species across a localized thermal gradient

Climatic variations are known to engender life-history diversification of species and populations at large spatial scales. However, the extent to which microgeographic variations in climate (e.g., those occurring within a single large ecosystem) can also drive life-history divergence is generally poorly documented. We exploited a spatial gradient in water temperatures at three sites across a large montane lake in southwest China (Lake Erhai) to examine the extent to which life histories of a short-lived fish species (icefish, Neosalanx taihuensis) diversified in response to thermal regime following introduction 25 y prior. In general, warmwater icefish variants grew faster, had larger adult body size and higher condition and fecundity, but matured at smaller sizes. Conversely, coldwater variants had smaller adult body size and lower condition, but matured at larger sizes and had larger eggs. These life-history differences strongly suggest that key ecological trade-offs exist for icefish populations exposed to different thermal regimes, and these trade-offs have driven relatively rapid diversification in the life histories of icefish within Lake Erhai. Results are surprisingly concordant with current knowledge on life-history evolution at macroecological scales, and suggest that improved conservation management might be possible by focusing on patterns operating at microgeographical, including, within-ecosystem scales.

Taxonomic and evolutionary analysis of Zaprionus indianus and its colonization of Palearctic and Neotropical regions

Zaprionus indianus is a dipteran (Drosophilidae) with a wide distribution throughout the tropics and temperate Palearctic and Nearctic regions. There have been proposals to reclassify the genus Zaprionus as a subgenus or group of the genus Drosophila because various molecular markers have indicated a close relationship between Zaprionus species and the immigrans-Hirtodrosophila radiation within Drosophila. These markers, together with alloenzymes and quantitative traits, have been used to describe the probable scenario for the expansion of Zaprionus indianus from its center of dispersal (Africa) to regions of Asia (ancient dispersal) and the Americas (recent dispersal). The introduction of Z. indianus into Brazil was first reported in 1999 and the current consensus is that the introduced flies came from high-latitude African populations through the importation of fruit. Once in Brazil, Z. indianus spread rapidly throughout the Southeast and then to the rest of the country, in association with highway-based fruit commerce. These and other aspects of the evolutionary biology of Z. indianus are addressed in this review, including a description of a probable route for this species’ dispersal during its recent expansion.

High abundance of neotropical drosophilids (Diptera: Drosophilidae) in four cultivated areas of central Brazil

The drosophilid assemblages of four cultivated areas (soy, bean, corn, and orange plantations) grown in the core of the Neotropical region were analyzed by comparing their abundances and compositions. The collections, which were gathered using 38 banana traps, captured 12,560 drosophilids, including nine Neotropical and six exotic species. Most of the flies were collected in the bean (43%) and soy (42%) fields. The composition and relative abundance of species also varied among cultivated areas, with orange orchards presenting the highest relative abundance of exotics due to the dominance of the Afrotropical Zaprionus indianus (Gupta). Crop plantations were dominated by a Neotropical species, Drosophila cardini (Sturtevant), which has been shown to be well adapted to dry and disturbed environments. We discuss the drosophilid assemblages of the cultivated areas, comparing them with assemblages from neighbor urban and natural environments. The low drosophilid richness found in this study is similar to the richness found in urban environments and lower than the drosophilid richness of forests, supporting a pattern already known for other taxa. The high abundance of drosophilids in cultivated areas, as well as the dominance of a Neotropical species (D. cardini) in the crop assemblages, was a surprising result.

Drosophilid assemblages at different urbanization levels in the city of Porto Alegre, state of Rio Grande do Sul, southern Brazil

The present study analyzed the drosophilid assemblages in different levels of urbanization in the city of Porto Alegre, Rio Grande do Sul, Brazil. Collections were carried out in 2008 in three different environments: a highly urbanized area-"Jardim Botânico," a forested area with intermediary urbanization-"Parque Gabriel Knijnik," and in a relatively well-preserved forested area, although threatened by the urban growth-"Morro Santana." In Jardim Botânico, 36 species belonging to four genera were found, with high abundance of exotic species as Drosophila simulans Sturtevant and Zaprionus indianus (Gupta). In Parque Gabriel Knijnik, 33 species that belonged to four genera were found, with higher abundances of native species belonging to the Drosophila tripunctata species group and Drosophila willistoni species subgroup, and lower abundance of exotic species. As for Morro Santana, 32 species and three genera were found, with higher abundances of native groups, low representativeness of exotic species, and absence of Zaprionus indianus. The analysis of the Jaccard index showed higher similarity in the species composition between samples collected in summer and autumn, and between samples collected in winter and spring. On the other hand, the Morisita index differentiated Jardim Botânico from the other two studied sites. Our results show that Morro Santana is an important area of native biodiversity, reinforcing, therefore, the inclusion of this area in the project for the creation of an ecological corridor as proposed by the Ministry of the Environment of Brazil.