1
|
Sevinçli ZŞ, Amudi K, Öncel BC, Yurtcu E, İşeri ÖD, Menges N. Selective RNA binding and imaging with imidazopyrazine-based fluorescent molecule. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2025; 340:126382. [PMID: 40373550 DOI: 10.1016/j.saa.2025.126382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2025] [Revised: 05/08/2025] [Accepted: 05/09/2025] [Indexed: 05/17/2025]
Abstract
We report the synthesis and characterization of novel imidazopyrazine-based fluorescent molecules 5a and 5b targeting RNA and DNA binding. Molecule 5b showed superior photophysical properties with stable fluorescence and high quantum yield in various solvents. UV-Vis and fluorescence spectroscopy revealed strong RNA binding with time-dependent fluorescence quenching and increasing absorbance, suggesting groove binding or π-π stacking interactions. Furthermore, agarose gel electrophoresis further confirmed selective RNA binding of 5b. Imaging studies demonstrated that 5b penetrated into viable MCF-7 cells and selectively stained RNA and retained fluorescence for up to 8 h under ambient conditions. These findings advance the study of RNA dynamics in living cells, highlighting the potential of 5b for RNA-specific bioimaging and sensing applications.
Collapse
Affiliation(s)
- Zekiye Şeyma Sevinçli
- Pharmaceutical Chemistry Section, Faculty of Pharmacy, Van Yuzuncu Yil University, Van 65100, Turkiye
| | - Karina Amudi
- Science and Technology Research and Application Center (BITAM), Necmettin Erbakan University, Konya 42090, Turkiye
| | - Buse Ceyda Öncel
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Başkent University, Ankara 06790, Turkiye
| | - Erkan Yurtcu
- Medical Biology Department, School of Medicine, Kırıkkale University, Kırıkkale 71451, Turkiye
| | - Özlem Darcansoy İşeri
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Başkent University, Ankara 06790, Turkiye
| | - Nurettin Menges
- Science and Technology Research and Application Center (BITAM), Necmettin Erbakan University, Konya 42090, Turkiye; Biomedical Engineering Section, Faculty of Engineering, Necmettin Erbakan University, Konya 42090, Turkiye.
| |
Collapse
|
2
|
Chruściel E, Ślusarczyk L, Gładyszewska B, Karcz D, Luchowski R, Nucia A, Ociepa T, Nowak M, Kowalczyk K, Włodarczyk A, Gagoś M, Okoń S, Matwijczuk A. Assessment of the Microbiological Potential and Spectroscopic Properties of New Imino-1,3,4-Thiadiazoles Showing the ESIPT Effect Strongly Enhanced by Aggregation. Molecules 2025; 30:531. [PMID: 39942635 PMCID: PMC11820074 DOI: 10.3390/molecules30030531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2024] [Revised: 01/18/2025] [Accepted: 01/20/2025] [Indexed: 02/16/2025] Open
Abstract
There is currently a growing interest in imino derivatives of compounds such as thiadiazoles and other groups of compounds whose extended π-electron systems enhance their photophysical properties. These compounds also show low toxicity and strong antifungal activity, making them effective against fungal pathogens in crops. For the above reasons, in the first part of the paper, the structure of the selected analogs was considered, and detailed spectroscopic analyses were conducted focusing on the excited state intramolecular proton transfer (ESIPT) process taking place in the same. Measurements were taken in terms of absorption spectroscopy and electron fluorescence, synchronous spectra, and fluorescence lifetimes, as well as calculations of fluorescence quantum efficiency in selected solvents and concentrations. In the spectral observations, the ESIPT process was manifested in several solvents as very distinct dual fluorescence. Moreover, in selected molecules, this phenomenon was strongly related to molecular aggregation, which was associated with not very efficient but nonetheless visible fluorescence of the AIE (Aggregation-Induced Emission) type. In the second part of the paper, a detailed preliminary study is presented exploring the microbiological properties of selected imino-1,3,4-thiadiazole derivatives in the context of their potential applicability as inhibitors affecting the development and growth of some of the most important fungal pathogens attacking cereal crops and posing an increasing threat to modern agriculture. Overall, the research presented in this article provides a detailed, experimental analysis of the spectroscopic properties of selected imino-thiadiazoles and points to their potential use as novel and effective solutions capable of limiting the growth and development of fungal pathogens in cereals.
Collapse
Affiliation(s)
- Edyta Chruściel
- Department of Biophysics, Faculty of Environmental Biology, University of Life Sciences in Lublin, Akademicka 13, 20-950 Lublin, Poland; (E.C.); (L.Ś.); (B.G.)
| | - Lidia Ślusarczyk
- Department of Biophysics, Faculty of Environmental Biology, University of Life Sciences in Lublin, Akademicka 13, 20-950 Lublin, Poland; (E.C.); (L.Ś.); (B.G.)
| | - Bożena Gładyszewska
- Department of Biophysics, Faculty of Environmental Biology, University of Life Sciences in Lublin, Akademicka 13, 20-950 Lublin, Poland; (E.C.); (L.Ś.); (B.G.)
| | - Dariusz Karcz
- Department of Chemical Technology and Environmental Analytics (C1), Faculty of Chemical Engineering and Technology, Cracow University of Technology, Warszawska 24, 31-155 Kraków, Poland;
| | - Rafał Luchowski
- Department of Biophysics, Institute of Physics, Maria Curie-Sklodowska University, 20-031 Lublin, Poland;
| | - Aleksandra Nucia
- Institute of Plant Genetics, Breeding and Biotechnology, University of Life Sciences in Lublin, 20-950 Lublin, Poland; (A.N.); (T.O.); (M.N.); (K.K.)
| | - Tomasz Ociepa
- Institute of Plant Genetics, Breeding and Biotechnology, University of Life Sciences in Lublin, 20-950 Lublin, Poland; (A.N.); (T.O.); (M.N.); (K.K.)
| | - Michał Nowak
- Institute of Plant Genetics, Breeding and Biotechnology, University of Life Sciences in Lublin, 20-950 Lublin, Poland; (A.N.); (T.O.); (M.N.); (K.K.)
| | - Krzysztof Kowalczyk
- Institute of Plant Genetics, Breeding and Biotechnology, University of Life Sciences in Lublin, 20-950 Lublin, Poland; (A.N.); (T.O.); (M.N.); (K.K.)
| | - Adam Włodarczyk
- Department of Organic Chemistry and Crystallochemistry, Institute of Chemical Sciences, Faculty of Chemistry, Maria Curie Skłodowska University in Lublin, Gliniana 33, 20-614 Lublin, Poland;
| | - Mariusz Gagoś
- Department of Cell Biology, Maria Curie-Sklodowska University, Akademicka 19, 20-033 Lublin, Poland;
| | - Sylwia Okoń
- Institute of Plant Genetics, Breeding and Biotechnology, University of Life Sciences in Lublin, 20-950 Lublin, Poland; (A.N.); (T.O.); (M.N.); (K.K.)
| | - Arkadiusz Matwijczuk
- Department of Biophysics, Faculty of Environmental Biology, University of Life Sciences in Lublin, Akademicka 13, 20-950 Lublin, Poland; (E.C.); (L.Ś.); (B.G.)
| |
Collapse
|
3
|
Gül S, Açıkgöz E, Çakır M, Menges N. Design and Synthesis of ESIPT-Based Imidazole Derivatives for Cell Imaging. ACS OMEGA 2024; 9:24291-24298. [PMID: 38882084 PMCID: PMC11171098 DOI: 10.1021/acsomega.3c09822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Revised: 05/14/2024] [Accepted: 05/20/2024] [Indexed: 06/18/2024]
Abstract
Excited-state intramolecular proton transfer (ESIPT)-based fluorescent molecules offer several exciting applications and are utilized most frequently as a cell imaging agent. Because of this, four distinct imidazole derivatives with ESIPT emission have been synthesized, and their fluorescence characteristics have been assessed in a variety of settings. Measurements using fluorescence spectroscopy have shown a promising candidate for cell staining, and potential candidate was specifically investigated for cell imaging uses in HT-29, MDA-MB-231, and HaCaT. Cytotoxicity of candidate molecule (1d) was analyzed using HT-29 and HaCaT cell lines, and at a dosage of 160 μM, HT-29 and HaCaT cell lines showed no signs of important cell toxicity. When spectroscopically measured, compound 1d showed no fluorescence ability in phosphate-buffered saline (PBS) solution. However, after 8 h of incubation in several cell lines, excellent fluorescence characteristics were seen in the green and red filters.
Collapse
Affiliation(s)
- Sergen Gül
- Science and Technology Research and Application Center (BITAM), Necmettin Erbakan University, 42100 Konya, Türkiye
| | - Eda Açıkgöz
- School of Medicine, Van Yüzüncü Yil University, 65080 Van, Türkiye
| | - Mustafa Çakır
- School of Medicine, Van Yüzüncü Yil University, 65080 Van, Türkiye
| | - Nurettin Menges
- Science and Technology Research and Application Center (BITAM), Necmettin Erbakan University, 42100 Konya, Türkiye
- Faculty of Pharmacy, Van Yüzüncü Yil University, 65080 Van, Türkiye
| |
Collapse
|
4
|
MENGEŞ N. Heterocyclic molecules with ESIPT emission: synthetic approaches, molecular diversities, and application strategies. Turk J Chem 2023; 47:888-909. [PMID: 38173742 PMCID: PMC10760871 DOI: 10.55730/1300-0527.3585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 10/31/2023] [Accepted: 09/30/2023] [Indexed: 01/05/2024] Open
Abstract
Excited-state intramolecular proton transfer (ESIPT) is one of the most essential emission processes in most circumstances because of its dual emission band in most cases and its high Stokes shifts. These distinguishing properties make ESIPT-based probes more suitable for a variety of applications, including analyte sensors, solid-state sensing mechanisms, optical technologies, and biomarkers for endogenous or exogenous compounds in various settings. As a result, researchers around the world are working on ESIPT emissions and developing different scaffolds for various applications or industry demands. This field of study is rapidly expanding and there is a need for an up-to-date review of synthesis methodologies and applications. This paper provides the highlights of ESIPT-based heterocyclic scaffolds, synthesis strategies, and application scenarios in the literature from 2017 to 2023.
Collapse
Affiliation(s)
- Nurettin MENGEŞ
- Science and Technology Research and Application Center (BİTAM), Necmettin Erbakan University, Konya,
Turkiye
- Department of Biomedical Engineering, Faculty of Engineering, Necmettin Erbakan University, Konya,
Turkiye
| |
Collapse
|
5
|
Alharthy RD, Urooj I, Tasleem M, Khalid M, Asghar MA, Khan SI, Ajmal M, Ahmed N, Shafiq Z. Synthesis of novel 3-hydroxy-2-naphthoic hydrazones as selective chemosensors for cyanide ions. RSC Adv 2023; 13:15208-15221. [PMID: 37213331 PMCID: PMC10193203 DOI: 10.1039/d3ra00788j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Accepted: 05/11/2023] [Indexed: 05/23/2023] Open
Abstract
The development of an effective and selective chemosensor for CN- ions has become the need of the hour due to their hazardous impact on the environment and humans. Herein, we report the synthesis of two novel chemosensors, IF-1 and IF-2 based on 3-hydroxy-2-naphthohydrazide and aldehyde derivatives that have shown selective sensing of CN- ions. IF-2 exhibited exclusive binding with CN- ions that is further confirmed by the binding constant value of 4.77 × 104 M-1 with a low detection limit (8.2 μM). The chemosensory potential is attributed to deprotonation of the labile Schiff base center by CN- ions that results in a color change from colorless to yellow as visible by the naked eye. Accompanying this, a DFT study was also performed in order to find the interaction between the sensor (IF-1) and its ions (F-). A notable charge transfer from 3-hydroxy-2-naphthamide to 2,4-di-tert-butyl-6-methylphenol, was indicated by the FMO analysis. The QTAIM analysis revealed that in the complex compound, the strongest pure hydrogen-hydrogen bonding was observed between H53 and H58, indicated by a ρ value of +0.017807. Due to its selective response, IF-2 can be successfully used for making test strips for the detection of CN- ions.
Collapse
Affiliation(s)
- Rima D Alharthy
- Department of Chemistry, Science & Arts College, King Abdulaziz University Rabigh Branch Rabigh 21911 Saudi Arabia
| | - Ifra Urooj
- Institute of Chemical Sciences, Bahauddin Zakariya University 60800 Multan Pakistan
| | - Mussarat Tasleem
- Institute of Chemical Sciences, Bahauddin Zakariya University 60800 Multan Pakistan
| | - Muhammad Khalid
- Institute of Chemistry, Khwaja Fareed University of Engineering & Information Technology Rahim Yar Khan 64200 Pakistan
- Centre for Theoretical and Computational Research, Khwaja Fareed University of Engineering & Information Technology Rahim Yar Khan 64200 Pakistan
| | - Muhammad Adnan Asghar
- Department of Chemistry, Division of Science and Technology, University of Education Lahore Pakistan
| | - Shaista Ijaz Khan
- Institute of Chemical Sciences, Bahauddin Zakariya University 60800 Multan Pakistan
| | - Muhammad Ajmal
- Institute of Chemical Sciences, Bahauddin Zakariya University 60800 Multan Pakistan
| | - Nadeem Ahmed
- Institute of Chemical Sciences, Bahauddin Zakariya University 60800 Multan Pakistan
| | - Zahid Shafiq
- Institute of Chemical Sciences, Bahauddin Zakariya University 60800 Multan Pakistan
| |
Collapse
|
6
|
Zhu H, Gong F, Ma P, Qian Y, He L, Chen L, Qin X, Xu L. Protein-activated and FRET enhanced excited-state intermolecular proton transfer fluorescent probes for high-resolution imaging of cilia and tunneling nanotubes in live cells. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 288:122142. [PMID: 36446173 DOI: 10.1016/j.saa.2022.122142] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Revised: 11/13/2022] [Accepted: 11/20/2022] [Indexed: 06/16/2023]
Abstract
Excited-state intermolecular proton transfer (inter-ESPT) fluorescent probes responsive to specific bioactive molecules should be greatly promising for protein sensing, DNA mutation simulating and cellular process regulating. However, the inter-ESPT molecules are recessive ESPT fluorophores, which need the assistance of other molecules with both hydrogen-bond accepting and donating abilities to turn on the tautomeric fluorescence. Valid design strategies to create powerful inter-ESPT fluorescent probes are poorly developed, particularly for proteins as targets. We recently reported a unique supramolecular strategy to trigger the inter-ESPT process based on the probe-protein recognition by H-bonding and to image protein-based subcellular structures in live cells. Herein, we found that our inter-ESPT probes (inter-ESPT-01) bearing a 2-amino-3-cyanopyridine scaffold can anchor proteins and light up the "invisible" ESPT state, so as to image the proteins or the protein-based subcellular organelles. More importantly, the inter-ESPT emission of inter-ESPT-01 can be significantly enhanced by the FRET process between amino and imino tautomers, endowing the inter-ESPT-01 probes with super-bright tautomeric fluorescence. The expressed proteins Ecallantide and MarTX were selected as the models to light up the inter-ESPT fluorescence of the probes and revealed that the inter-ESPT process can be triggered by the specific probe-protein recognition events. In the use of the super-bright inter-ESPT fluorescence, not only the proteins, but also the protein-based cilia and tunneling nanotubes (TNTs) can be specifically visualized in living cancer cells. Furthermore, such recognition-driven strategy allows us to construct a unique inter-ESPT probe to track and image specific endogenous proteins in live cells, highlighting the potential of inter-ESPT fluorogens as novel intelligent biomaterials.
Collapse
Affiliation(s)
- Hanming Zhu
- College of Chemistry and Chemical Engineering, Changsha University of Science and Technology, Changsha 410114, PR China
| | - Fuchun Gong
- College of Chemistry and Chemical Engineering, Changsha University of Science and Technology, Changsha 410114, PR China.
| | - Pan Ma
- College of Chemistry and Chemical Engineering, Changsha University of Science and Technology, Changsha 410114, PR China
| | - You Qian
- College of Chemistry and Chemical Engineering, Changsha University of Science and Technology, Changsha 410114, PR China
| | - Lingzhi He
- College of Chemistry and Chemical Engineering, Changsha University of Science and Technology, Changsha 410114, PR China
| | - Lusen Chen
- College of Chemistry and Chemical Engineering, Changsha University of Science and Technology, Changsha 410114, PR China
| | - Xiaoling Qin
- College of Chemistry and Chemical Engineering, Changsha University of Science and Technology, Changsha 410114, PR China
| | - Lujie Xu
- College of Chemistry and Chemical Engineering, Changsha University of Science and Technology, Changsha 410114, PR China
| |
Collapse
|
7
|
Silicon corrole functionalized Color Catcher strips for Fluoride ion detection. CHEMICAL ENGINEERING JOURNAL ADVANCES 2023. [DOI: 10.1016/j.ceja.2023.100478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/17/2023] Open
|
8
|
Sarmiento JT, Portilla J. Current Advances in Diazoles-based Chemosensors for CN- and FDetection. Curr Org Synth 2023; 20:77-95. [PMID: 35184705 DOI: 10.2174/1570179419666220218095741] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 12/19/2021] [Accepted: 01/10/2022] [Indexed: 12/16/2022]
Abstract
Advances in molecular probes have recently intensified because they are valuable tools in studying species of interest for human health, the environment, and industry. Among these species, cyanide (CN-) and fluoride (F-) stand out as hazardous and toxic ions in trace amounts. Thus, there is a significant interest in probes design for their detection with diverse diazoles (pyrazole and imidazole) used for this purpose. These diazole derivatives are known as functional molecules because of their known synthetic versatility and applicability, as they exhibit essential photophysical properties with helpful recognition centers. This review provides an overview of the recent progress (2017-2021) in diazole-based sensors for CN- and F- detection, using the azolic ring as a signaling or recognition unit. The discussion focuses on the mechanism of the action described for recognizing the anion, the structure of the probes with the best synthetic simplicity, detection limits (LODs), application, and selectivity. In this context, the analysis involves probes for cyanide sensing first, then probes for fluoride sensing, and ultimately, dual probes that allow both species recognition.
Collapse
Affiliation(s)
- Jeymy T Sarmiento
- Department of Chemistry, Faculty of Sciences, Universidad de los Andes, Bogota, D.C, Colombia
| | - Jaime Portilla
- Department of Chemistry, Faculty of Sciences, Universidad de los Andes, Bogota, D.C, Colombia
| |
Collapse
|
9
|
Shukla AK, Savita, Mahale A, Kulkarni OP, Bhattacharya A. A modular approach to fluorescent probes: Extending the scope of β-carboline scaffold to selective fluoride sensing and its application in the visualisation of fluoride-induced ROS. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2022.114453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
10
|
Kaya S, Aydın HG, Keskin S, Ekmekci Z, Menges N. Exploring of indole derivatives for ESIPT emission: A new ESIPT-based fluorescence skeleton and TD-DFT calculations. J Photochem Photobiol A Chem 2021. [DOI: 10.1016/j.jphotochem.2021.113487] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
|