1
|
Mullens N, Hendrycks W, Bakengesa J, Kabota S, Tairo J, Svardal H, Majubwa R, Mwatawala M, De Meyer M, Virgilio M. Anna Karenina as a promoter of microbial diversity in the cosmopolitan agricultural pest Zeugodacus cucurbitae (Diptera, Tephritidae). PLoS One 2024; 19:e0300875. [PMID: 38568989 PMCID: PMC10990204 DOI: 10.1371/journal.pone.0300875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 03/06/2024] [Indexed: 04/05/2024] Open
Abstract
Gut microbial communities are critical in determining the evolutive success of fruit fly phytophagous pests (Diptera, Tephritidae), facilitating their adaptation to suboptimal environmental conditions and to plant allelochemical defences. An important source of variation for the microbial diversity of fruit flies is represented by the crop on which larvae are feeding. However, a "crop effect" is not always the main driver of microbial patterns, and it is often observed in combination with other and less obvious processes. In this work, we aim at verifying if environmental stress and, by extension, changing environmental conditions, can promote microbial diversity in Zeugodacus cucurbitae (Coquillett), a cosmopolitan pest of cucurbit crops. With this objective, 16S rRNA metabarcoding was used to test differences in the microbial profiles of wild fly populations in a large experimental setup in Eastern Central Tanzania. The analysis of 2,973 unique ASV, which were assigned to 22 bacterial phyla, 221 families and 590 putative genera, show that microbial α diversity (as estimated by Abundance Coverage Estimator, Faith's Phylogenetic Diversity, Shannon-Weiner and the Inverse Simpson indexes) as well as β microbial diversity (as estimated by Compositional Data analysis of ASVs and of aggregated genera) significantly change as the species gets closer to its altitudinal limits, in farms where pesticides and agrochemicals are used. Most importantly, the multivariate dispersion of microbial patterns is significantly higher in these stressful environmental conditions thus indicating that Anna Karenina effects contribute to the microbial diversity of Z. cucurbitae. The crop effect was comparably weaker and detected as non-consistent changes across the experimental sites. We speculate that the impressive adaptive potential of polyphagous fruit flies is, at least in part, related to the Anna Karenina principle, which promotes stochastic changes in the microbial diversity of fly populations exposed to suboptimal environmental conditions.
Collapse
Affiliation(s)
- Nele Mullens
- Royal Museum for Central Africa, Biology Department, Tervuren, Belgium
- University of Antwerp, Department of Biology, Antwerp, Belgium
| | - Wouter Hendrycks
- Royal Museum for Central Africa, Biology Department, Tervuren, Belgium
- University of Antwerp, Department of Biology, Antwerp, Belgium
| | - Jackline Bakengesa
- Department of Crop Science and Horticulture, Sokoine University of Agriculture, Morogoro, Tanzania
- Department of Biology, University of Dodoma (UDOM), Dodoma, Tanzania
| | - Sija Kabota
- Department of Crop Science and Horticulture, Sokoine University of Agriculture, Morogoro, Tanzania
- National Sugar Institute, Academic, Research and Consultancy Section, Morogoro, Tanzania
| | - Jenipher Tairo
- Department of Crop Science and Horticulture, Sokoine University of Agriculture, Morogoro, Tanzania
| | - Hannes Svardal
- University of Antwerp, Department of Biology, Antwerp, Belgium
- Naturalis Biodiversity Center, Leiden, Netherlands
| | - Ramadhani Majubwa
- Department of Crop Science and Horticulture, Sokoine University of Agriculture, Morogoro, Tanzania
| | - Maulid Mwatawala
- Department of Crop Science and Horticulture, Sokoine University of Agriculture, Morogoro, Tanzania
| | - Marc De Meyer
- Royal Museum for Central Africa, Biology Department, Tervuren, Belgium
| | | |
Collapse
|
2
|
Kempraj V, Auth J, Cha DH, Mason CJ. Impact of Larval Food Source on the Stability of the Bactrocera dorsalis Microbiome. MICROBIAL ECOLOGY 2024; 87:46. [PMID: 38407587 PMCID: PMC10896919 DOI: 10.1007/s00248-024-02352-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 01/22/2024] [Indexed: 02/27/2024]
Abstract
Bacterial symbionts are crucial to the biology of Bactrocera dorsalis. With larval diet (fruit host) being a key factor that determines microbiome composition and with B. dorsalis using more than 400 fruits as hosts, it is unclear if certain bacterial symbionts are preserved and are passed on to B. dorsalis progenies despite changes in larval diet. Here, we conducted a fly rearing experiment to characterize diet-induced changes in the microbiome of female B. dorsalis. In order to explicitly investigate the impacts of larval diet on the microbiome, including potential stable bacterial constituents of B. dorsalis, we performed 16S rRNA sequencing on the gut tissues of teneral female flies reared from four different host fruits (guava, mango, papaya, and rose apple) infested using a single cohort of wild B. dorsalis that emerged from tropical almond (mother flies). Although B. dorsalis-associated microbiota were predominantly shaped by the larval diet, some major bacterial species from the mother flies were retained in progenies raised on different larval diets. With some variation, Klebsiella (ASV 1 and 2), Morganella (ASV 3), and Providencia (ASV 6) were the major bacterial symbionts that were stable and made up 0.1-80% of the gut and ovipositor microbiome of female teneral flies reared on different host fruits. Our results suggest that certain groups of bacteria are stably associated with female B. dorsalis across larval diets. These findings provide a basis for unexplored research on symbiotic bacterial function in B. dorsalis and may aid in the development of novel management techniques against this devastating pest of horticultural importance.
Collapse
Affiliation(s)
- Vivek Kempraj
- USDA-ARS, Tropical Crop and Commodity Protection Research Unit, Daniel K Inouye US Pacific Basin Agriculture Research Center, Hilo, HI, 96720, USA
- College of Tropical Agriculture and Human Resources, Komohana Research and Extension Center, University of Hawai'i, Hilo, HI, 96720, USA
| | - Jean Auth
- USDA-ARS, Tropical Pest Genetics and Molecular Biology Research Unit, Daniel K Inouye US Pacific Basin Agriculture Research Center, Hilo, HI, 96720, USA
| | - Dong H Cha
- USDA-ARS, Tropical Crop and Commodity Protection Research Unit, Daniel K Inouye US Pacific Basin Agriculture Research Center, Hilo, HI, 96720, USA.
| | - Charles J Mason
- USDA-ARS, Tropical Pest Genetics and Molecular Biology Research Unit, Daniel K Inouye US Pacific Basin Agriculture Research Center, Hilo, HI, 96720, USA.
| |
Collapse
|
3
|
Remmal I, Bel Mokhtar N, Maurady A, Reda Britel M, El Fakhouri K, Asimakis E, Tsiamis G, Stathopoulou P. Characterization of the Bacterial Microbiome in Natural Populations of Barley Stem Gall Midge, Mayetiola hordei, in Morocco. Microorganisms 2023; 11:microorganisms11030797. [PMID: 36985370 PMCID: PMC10051481 DOI: 10.3390/microorganisms11030797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Revised: 03/13/2023] [Accepted: 03/15/2023] [Indexed: 03/30/2023] Open
Abstract
Mayetiola hordei (Kieffer), known as barley stem gall midge, is one of the most destructive barley pests in many areas around the world, inflicting significant qualitative and quantitative damage to crop production. In this study, we investigate the presence of reproductive symbionts, the effect of geographical origin on the bacterial microbiome's structure, and the diversity associated with natural populations of M. hordei located in four barley-producing areas in Morocco. Wolbachia infection was discovered in 9% of the natural populations using a precise 16S rDNA PCR assay. High-throughput sequencing of the V3-V4 region of the bacterial 16S rRNA gene indicated that the native environments of samples had a substantial environmental impact on the microbiota taxonomic assortment. Briefly, 5 phyla, 7 classes, and 42 genera were identified across all the samples. To our knowledge, this is the first report on the bacterial composition of M. hordei natural populations. The presence of Wolbachia infection may assist in the diagnosis of ideal natural populations, providing a new insight into the employment of Wolbachia in the control of barley midge populations, in the context of the sterile insect technique or other biological control methods.
Collapse
Affiliation(s)
- Imane Remmal
- Laboratory of Innovative Technologies, National School of Applied Sciences of Tangier, Abdelmalek Essaâdi University, BP 1818 Tanger Principal, Tanger 90000, Morocco
- Faculty of Sciences and Technology of Tangier, Abdelmalek Essâadi University, Tétouan 93000, Morocco
| | - Naima Bel Mokhtar
- Laboratory of Innovative Technologies, National School of Applied Sciences of Tangier, Abdelmalek Essaâdi University, BP 1818 Tanger Principal, Tanger 90000, Morocco
- Laboratory of Systems Microbiology and Applied Genomics, Department of Sustainable Agriculture, University of Patras, 30100 Agrinio, Greece
| | - Amal Maurady
- Laboratory of Innovative Technologies, National School of Applied Sciences of Tangier, Abdelmalek Essaâdi University, BP 1818 Tanger Principal, Tanger 90000, Morocco
- Faculty of Sciences and Technology of Tangier, Abdelmalek Essâadi University, Tétouan 93000, Morocco
| | - Mohammed Reda Britel
- Laboratory of Innovative Technologies, National School of Applied Sciences of Tangier, Abdelmalek Essaâdi University, BP 1818 Tanger Principal, Tanger 90000, Morocco
| | - Karim El Fakhouri
- AgroBioSciences Program, College for Sustainable Agriculture and Environmental Science, Mohammed VI Polytechnic University, Lot 660, Hay Moulay Rachid, Ben Guerir 43150, Morocco
| | - Elias Asimakis
- Laboratory of Systems Microbiology and Applied Genomics, Department of Sustainable Agriculture, University of Patras, 30100 Agrinio, Greece
| | - George Tsiamis
- Laboratory of Systems Microbiology and Applied Genomics, Department of Sustainable Agriculture, University of Patras, 30100 Agrinio, Greece
| | - Panagiota Stathopoulou
- Laboratory of Systems Microbiology and Applied Genomics, Department of Sustainable Agriculture, University of Patras, 30100 Agrinio, Greece
| |
Collapse
|
4
|
Hafsi A, Delatte H. Enterobactereaceae symbiont as facilitators of biological invasion: review on Tephritidae fruit flies. Biol Invasions 2022. [DOI: 10.1007/s10530-022-02960-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
5
|
Song SL, Yong HS, Chua KO, Eamsobhana P, Lim PE, Chan KG. Core members and differential abundance of chrysomelid microbiota in the life stages of Podontiaaffinis (Galerucinae) and adult Silanafarinosa(Cassidinae, Coleoptera). Biodivers Data J 2022; 10:e87459. [PMID: 36761655 PMCID: PMC9836631 DOI: 10.3897/bdj.10.e87459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 09/28/2022] [Indexed: 11/12/2022] Open
Abstract
The chrysomelid beetlesPodontiaaffinis and Silanafarinosa are members of the subfamilies Galerucinae and Cassidinae, respectively. This study, based on 16S rRNA gene-targeted metagenomics sequencing, reports the core members and differential abundance of bacterial communities in the larvae and adult beetles of P.affinis and the adult S.farinosa. Cyanobacteria/Melainabacteria group was the predominant phylum in the larvae of P.affinis, while Proteobacteria was the predominant phylum in adult P.affinis and S.farinosa. The number of Order, Family, Genus and Species OTUs in the adult stage of P.affinis was higher than that in the larval stage. The bacterial species richness of adult P.affinis was significantly higher than that of adult S.farinosa. Betaproteobacteria was the predominant class in adult P.affinis, Cyanobacteria in the larvae of P.affinis and Gammaproteobacteria in S.farinosa. The larvae and adult beetles of P.affinis and adult S.farinosahad a low number of unique and shared bacterial OTUs (> 5% relative abundance). The differences in the microbiota indicate possible differences in nutrient assimilation, host taxonomy and other stochastic processes. These findings provide new information to our understanding of the bacteria associated with specialist phytophagous chrysomelid beetles and beetles in general.
Collapse
Affiliation(s)
- Sze-Looi Song
- Institute for Advanced Studies, Universiti Malaya, Kuala Lumpur, MalaysiaInstitute for Advanced Studies, Universiti MalayaKuala LumpurMalaysia,Institute of Ocean and Earth Sciences, Universiti Malaya, Kuala Lumpur, MalaysiaInstitute of Ocean and Earth Sciences, Universiti MalayaKuala LumpurMalaysia
| | - Hoi-Sen Yong
- Institute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur, MalaysiaInstitute of Biological Sciences, Faculty of Science, Universiti MalayaKuala LumpurMalaysia
| | - Kah-Ooi Chua
- Centre for Research in Biotechnology for Agriculture, Universiti Malaya, Kuala Lumpur, MalaysiaCentre for Research in Biotechnology for Agriculture, Universiti MalayaKuala LumpurMalaysia
| | - Praphathip Eamsobhana
- Department of Parasitology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, ThailandDepartment of Parasitology, Faculty of Medicine Siriraj Hospital, Mahidol UniversityBangkokThailand
| | - Phaik-Eem Lim
- Institute of Ocean and Earth Sciences, Universiti Malaya, Kuala Lumpur, MalaysiaInstitute of Ocean and Earth Sciences, Universiti MalayaKuala LumpurMalaysia
| | - Kok-Gan Chan
- Institute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur, MalaysiaInstitute of Biological Sciences, Faculty of Science, Universiti MalayaKuala LumpurMalaysia
| |
Collapse
|
6
|
Bel Mokhtar N, Catalá-Oltra M, Stathopoulou P, Asimakis E, Remmal I, Remmas N, Maurady A, Britel MR, García de Oteyza J, Tsiamis G, Dembilio Ó. Dynamics of the Gut Bacteriome During a Laboratory Adaptation Process of the Mediterranean Fruit Fly, Ceratitis capitata. Front Microbiol 2022; 13:919760. [PMID: 35847076 PMCID: PMC9283074 DOI: 10.3389/fmicb.2022.919760] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Accepted: 05/30/2022] [Indexed: 11/13/2022] Open
Abstract
Laboratory adaptation process used in sterile insect technique (SIT) programs can exert a significant impact on the insect-gut microbiome relationship, which may negatively impact the quality and performance of the fly. In the present study, changes in the gut microbiota that occur through laboratory adaptation of two Ceratitis capitata populations were investigated: Vienna 8 genetic sexing strain (GSS), a long-established control line, and a wild population recently introduced to laboratory conditions. The bacterial profiles were studied for both strains using amplicon sequencing of the 16S rRNA V3-V4 hypervariable region in larvae and in the gastrointestinal tract of teneral (1 day) and adults (5 and 15 days) reared under laboratory conditions for 14 generations (F0-F13). Findings demonstrated the development of distinct bacterial communities across the generations with differences in the bacterial composition, suggesting a strong impact of laboratory adaptation on the fly bacteriome. Moreover, different bacterial profiles were observed between wild and Vienna 8 FD-GSS displaying different patterns between the developmental stages. Proteobacteria, mainly members of the Enterobacteriaceae family, represented the major component of the bacterial community followed by Firmicutes (mainly in Vienna 8 FD-GSS adults) and Chlamydiae. The distribution of these communities is dynamic across the generations and seems to be strain- and age-specific. In the Vienna 8 FD-GSS population, Providencia exhibited high relative abundance in the first three generations and decreased significantly later, while Klebsiella was relatively stable. In the wild population, Klebsiella was dominant across most of the generations, indicating that the wild population was more resistant to artificial rearing conditions compared with the Vienna 8 FD-GSS colony. Analysis of the core bacteriome revealed the presence of nine shared taxa between most of the examined medfly samples including Klebsiella, Providencia, Pantoea, and Pseudomonas. In addition, the operational taxonomic unit co-occurrence and mutual exclusion networks of the wild population indicated that most of the interactions were classified as co-presence, while in the Vienna 8 FD-GSS population, the number of mutual exclusions and co-presence interactions was equally distributed. Obtained results provided a thorough study of the dynamics of gut-associated bacteria during the laboratory adaptation of different Ceratitis capitata populations, serving as guidance for the design of colonization protocols, improving the effectiveness of artificial rearing and the SIT application.
Collapse
Affiliation(s)
- Naima Bel Mokhtar
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, Agrinio, Greece
- Laboratory of Innovative Technology, National School of Applied Sciences of Tangier, Abdelmalek Essâadi University, Tétouan, Morocco
| | - Marta Catalá-Oltra
- Empresa de Transformación Agraria S.A., S.M.E., M.P. (TRAGSA), Paterna, Spain
| | - Panagiota Stathopoulou
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, Agrinio, Greece
| | - Elias Asimakis
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, Agrinio, Greece
| | - Imane Remmal
- Laboratory of Innovative Technology, National School of Applied Sciences of Tangier, Abdelmalek Essâadi University, Tétouan, Morocco
| | - Nikolaos Remmas
- Laboratory of Wastewater Management and Treatment Technologies, Department of Environmental Engineering, Democritus University of Thrace, Xanthi, Greece
| | - Amal Maurady
- Laboratory of Innovative Technology, National School of Applied Sciences of Tangier, Abdelmalek Essâadi University, Tétouan, Morocco
- Faculty of Sciences and Technology of Tangier, Abdelmalek Essâadi University, Tétouan, Morocco
| | - Mohammed Reda Britel
- Laboratory of Innovative Technology, National School of Applied Sciences of Tangier, Abdelmalek Essâadi University, Tétouan, Morocco
| | | | - George Tsiamis
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, Agrinio, Greece
| | - Óscar Dembilio
- Empresa de Transformación Agraria S.A., S.M.E., M.P. (TRAGSA), Paterna, Spain
| |
Collapse
|
7
|
Salgueiro J, Nussenbaum AL, Milla FH, Asimakis E, Goane L, Ruiz MJ, Bachmann GE, Vera MT, Stathopoulou P, Bourtzis K, Deutscher AT, Lanzavecchia SB, Tsiamis G, Segura DF. Analysis of the Gut Bacterial Community of Wild Larvae of Anastrepha fraterculus sp. 1: Effect of Host Fruit, Environment, and Prominent Stable Associations of the Genera Wolbachia, Tatumella, and Enterobacter. Front Microbiol 2022; 13:822990. [PMID: 35359740 PMCID: PMC8960962 DOI: 10.3389/fmicb.2022.822990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Accepted: 01/24/2022] [Indexed: 11/13/2022] Open
Abstract
The genus Anastrepha (Diptera Tephritidae) includes some of the most important fruit fly pests in the Americas. Here, we studied the gut bacterial community of 3rd instar larvae of Anastrepha fraterculus sp. 1 through Next Generation Sequencing (lllumina) of the V3-V4 hypervariable region within the 16S rRNA gene. Gut bacterial communities were compared between host species (guava and peach), and geographical origins (Concordia and Horco Molle in Argentina) representing distinct ecological scenarios. In addition, we explored the effect of spatial scale by comparing the samples collected from different trees within each geographic origin and host species. We also addressed the effect of fruit size on bacterial diversity. The gut bacterial community was affected both by host species and geographic origin. At smaller spatial scales, the gut bacterial profile differed among trees of the same species and location at least in one host-location combination. There was no effect of fruit size on the larval gut bacteriome. Operational Taxonomic Units (OTUs) assigned to Wolbachia, Tatumella and Enterobacter were identified in all samples examined, which suggest potential, non-transient symbioses. Better knowledge on the larval gut bacteriome contributes valuable information to develop sustainable control strategies against A. fraterculus targeting key symbionts as the Achilles' heel to control this important fruit fly pest.
Collapse
Affiliation(s)
- Julieta Salgueiro
- Instituto de Genética “Ewald A. Favret” (INTA) – GV IABIMO (CONICET), Hurlingham, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
| | - A. Laura Nussenbaum
- Instituto de Genética “Ewald A. Favret” (INTA) – GV IABIMO (CONICET), Hurlingham, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
| | - Fabián H. Milla
- Instituto de Genética “Ewald A. Favret” (INTA) – GV IABIMO (CONICET), Hurlingham, Argentina
| | - Elias Asimakis
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, Agrinio, Greece
| | - Lucía Goane
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
- Facultad de Agronomía y Zootecnia, Universidad Nacional de Tucumán, San Miguel de Tucumán, Argentina
| | - M. Josefina Ruiz
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
- Facultad de Agronomía y Zootecnia, Universidad Nacional de Tucumán, San Miguel de Tucumán, Argentina
| | - Guillermo E. Bachmann
- Instituto de Genética “Ewald A. Favret” (INTA) – GV IABIMO (CONICET), Hurlingham, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
| | - María T. Vera
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
- Facultad de Agronomía y Zootecnia, Universidad Nacional de Tucumán, San Miguel de Tucumán, Argentina
| | - Panagiota Stathopoulou
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, Agrinio, Greece
| | - Kostas Bourtzis
- Insect Pest Control Laboratory, Joint FAO/IAEA Center of Nuclear Techniques in Food and Agriculture, Vienna, Austria
| | - Ania T. Deutscher
- Biosecurity and Food Safety, NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute (EMAI), Menangle, NSW, Australia
| | - Silvia B. Lanzavecchia
- Instituto de Genética “Ewald A. Favret” (INTA) – GV IABIMO (CONICET), Hurlingham, Argentina
| | - George Tsiamis
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, Agrinio, Greece
| | - Diego F. Segura
- Instituto de Genética “Ewald A. Favret” (INTA) – GV IABIMO (CONICET), Hurlingham, Argentina
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina
| |
Collapse
|
8
|
Liu Y, Xu L, Zhang Z, Huang Z, Fang D, Zheng X, Yang Z, Lu M. Isolation, Identification, and Analysis of Potential Functions of Culturable Bacteria Associated with an Invasive Gall Wasp, Leptocybe invasa. MICROBIAL ECOLOGY 2022; 83:151-166. [PMID: 33758980 DOI: 10.1007/s00248-021-01715-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2020] [Accepted: 02/07/2021] [Indexed: 05/17/2023]
Abstract
Symbioses between invasive insects and bacteria are one of the key drivers of insect invasion success. Gall-inducing insects stimulate host plants to produce galls, which affects the normal growth of plants. Leptocybe invasa Fisher et La Salle, an invasive gall-inducing wasp, mainly damages Eucalyptus plantations in Southern China, but little is known about its associated bacteria. The aim of this study was to assess the diversity of bacterial communities at different developmental stages of L. invasa and to identify possible ecological functions of the associated bacteria. Bacteria associated with L. invasa were isolated using culture-dependent methods and their taxonomic statuses were determined by sequencing the 16S rRNA gene. A total of 88 species belonging to four phyla, 27 families, and 44 genera were identified by phylogenetic analysis. The four phyla were Proteobacteria, Actinobacteria, Firmicutes, and Bacteroidetes, mainly from the genera Pantoea, Enterobacter, Pseudomonas, Bacillus, Acinetobacter, Curtobacterium, Sphingobium, Klebsiella, and Rhizobium. Among them, 72 species were isolated in the insect gall stage and 46 species were isolated from the adult stage. The most abundant bacterial species were γ-Proteobacteria. We found significant differences in total bacterial counts and community compositions at different developmental stages, and identified possible ecological roles of L. invasa-associated bacteria. This study is the first to systematically investigate the associated bacteria of L. invasa using culture-dependent methods, and provides a reference for other gall-inducing insects and associated bacteria.
Collapse
Affiliation(s)
- Yipeng Liu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Letian Xu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
| | - Zhouqiong Zhang
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Zongyou Huang
- Guangxi Key Laboratory of Agric-Environment and Agric-Products Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning, China
| | - Dongxue Fang
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Xialin Zheng
- Guangxi Key Laboratory of Agric-Environment and Agric-Products Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning, China
| | - Zhende Yang
- Guangxi Key Laboratory of Agric-Environment and Agric-Products Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning, China
| | - Min Lu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China.
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China.
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.
| |
Collapse
|
9
|
Asimakis E, Stathopoulou P, Sapounas A, Khaeso K, Batargias C, Khan M, Tsiamis G. New Insights on the Zeugodacus cucurbitae (Coquillett) Bacteriome. Microorganisms 2021; 9:microorganisms9030659. [PMID: 33810199 PMCID: PMC8004655 DOI: 10.3390/microorganisms9030659] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Revised: 03/18/2021] [Accepted: 03/19/2021] [Indexed: 12/19/2022] Open
Abstract
Various factors, including the insect host, diet, and surrounding ecosystem can shape the structure of the bacterial communities of insects. We have employed next generation, high-throughput sequencing of the 16S rRNA to characterize the bacteriome of wild Zeugodacus (Bactrocera) cucurbitae (Coquillett) flies from three regions of Bangladesh. The tested populations developed distinct bacterial communities with differences in bacterial composition, suggesting that geography has an impact on the fly bacteriome. The dominant bacteria belonged to the families Enterobacteriaceae, Dysgomonadaceae and Orbaceae, with the genera Dysgonomonas, Orbus and Citrobacter showing the highest relative abundance across populations. Network analysis indicated variable interactions between operational taxonomic units (OTUs), with cases of mutual exclusion and copresence. Certain bacterial genera with high relative abundance were also characterized by a high degree of interactions. Interestingly, genera with a low relative abundance like Shimwellia, Gilliamella, and Chishuiella were among those that showed abundant interactions, suggesting that they are also important components of the bacterial community. Such knowledge could help us identify ideal wild populations for domestication in the context of the sterile insect technique or similar biotechnological methods. Further characterization of this bacterial diversity with transcriptomic and metabolic approaches, could also reveal their specific role in Z. cucurbitae physiology.
Collapse
Affiliation(s)
- Elias Asimakis
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, 2 Seferi St., 30100 Agrinio, Greece; (E.A.); (P.S.); (K.K.)
| | - Panagiota Stathopoulou
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, 2 Seferi St., 30100 Agrinio, Greece; (E.A.); (P.S.); (K.K.)
| | - Apostolis Sapounas
- Laboratory of Applied Genetics and Fish Breeding, Department of Animal Production, Fisheries and Aquaculture, University of Patras, Nea Ktiria, 30200 Messolonghi, Greece; (A.S.); (C.B.)
| | - Kanjana Khaeso
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, 2 Seferi St., 30100 Agrinio, Greece; (E.A.); (P.S.); (K.K.)
| | - Costas Batargias
- Laboratory of Applied Genetics and Fish Breeding, Department of Animal Production, Fisheries and Aquaculture, University of Patras, Nea Ktiria, 30200 Messolonghi, Greece; (A.S.); (C.B.)
| | - Mahfuza Khan
- Institute of Food and Radiation Biology (IFRB), Atomic Energy Research Establishment (AERE), Ganak bari, Savar, Dhaka 1349, Bangladesh;
| | - George Tsiamis
- Laboratory of Systems Microbiology and Applied Genomics, Department of Environmental Engineering, University of Patras, 2 Seferi St., 30100 Agrinio, Greece; (E.A.); (P.S.); (K.K.)
- Correspondence: ; Tel.: +30-264-107-4149
| |
Collapse
|
10
|
Choudhary JS, Naaz N, Prabhakar CS, Das B, Singh AK, Bhatt BP. High Taxonomic and Functional Diversity of Bacterial Communities Associated with Melon Fly, Zeugodacus cucurbitae (Diptera: Tephritidae). Curr Microbiol 2021; 78:611-623. [PMID: 33392673 DOI: 10.1007/s00284-020-02327-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Accepted: 12/09/2020] [Indexed: 01/16/2023]
Abstract
The next generation sequencing (NGS) approach has facilitated the investigations of gut microbiota with high throughput and resolution. The present study was focused on the taxonomic and functional characterization of bacterial community associated with different developmental stages of melon fly, Zeugodacus cucurbitae using 16S ribosomal RNA (rRNA) gene amplicons metagenomics. Z. cucurbitae is considered an invasive and most staid polyphagous pest of cucurbitaceous and other related crops. The taxonomic analysis of highly variable V3-V4 region of bacterial 16S rRNA gene sequencing indicated that the bacterial community associated with Z. cucurbitae consists of a total of 23 bacterial phyla (including unclassified and unassigned bacteria), comprising 32 classes, 69 orders, 99 families and 130 genera. Proteobacteria, Firmicutes, Actinobacteria and Tenericutes were dominant phyla of which family, Enterobacteriaceae was the most abundant in the larval and adult female stages, whereas Mycoplasmataceae was the dominant in the pupal stage. In larval stages of Z. cucurbitae, genus Providencia and Comamonas were the most abundant. However, genus Candidatus-Bacilloplasma and Klebsiella were the most dominant in pupae and adult females of Z. cucurbitae, respectively. PICRUSt analysis conducted for prediction of metabolic activities revealed that associated microbiota were involved in membrane transport, carbohydrate metabolism, amino acid metabolism, energy metabolism, replication and repair processes as well as cellular processes and signalling. The higher number of OTUs was annotated for phosphoglycerate mutase and transketolase in adult females followed by larval stages, which may support the digestive function of the microbiota in larvae and adult females. Our findings provide insights about the high variation in microbiota across developmental stages and basis for microbiota-based management strategies of fruit flies.
Collapse
Affiliation(s)
- Jaipal S Choudhary
- Farming Systems Research Centre for Hill and Plateau Region, ICAR-RCER, Plandu, Ranchi, Jharkhand, 834 010, India.
| | - Naiyar Naaz
- Farming Systems Research Centre for Hill and Plateau Region, ICAR-RCER, Plandu, Ranchi, Jharkhand, 834 010, India.,University Department of Botany, Ranchi University, Morabadi, Ranchi, Jharkhand, 843 008, India
| | - Chandra S Prabhakar
- Farming Systems Research Centre for Hill and Plateau Region, ICAR-RCER, Plandu, Ranchi, Jharkhand, 834 010, India.,Department of Entomology, Veer Kunwar Singh College of Agriculture, Dumraon (Bihar Agricultural University, Sabour), Buxar, Bihar, 802 136, India
| | - Bikash Das
- Farming Systems Research Centre for Hill and Plateau Region, ICAR-RCER, Plandu, Ranchi, Jharkhand, 834 010, India
| | - Arun K Singh
- Farming Systems Research Centre for Hill and Plateau Region, ICAR-RCER, Plandu, Ranchi, Jharkhand, 834 010, India
| | - B P Bhatt
- ICAR-Research Complex for Eastern Region, ICAR Parisar, P. O. Bihar Veterinary College, Patna, Bihar, 800 014, India
| |
Collapse
|