Deciphering the genetic diversity and population structure of Turkish bread wheat germplasm using iPBS-retrotransposons markers

Exploring the genetic diversity and population structure of upland cotton germplasm by iPBS-retrotransposons markers

BACKGROUND

Upland cotton is one of the utmost significant strategic fiber crops, and play a vital role in the global textile industry.

METHODS AND RESULTS

A total of 128 genotypes comprised Gossypium hirsutum L, Gossypium barbadense L., and pure lines were used to examine genetic diversity using iPBS-retrotransposon markers system. Eleven highly polymorphic primers yielded 287 bands and 99.65% polymorphism was recorded. The mean polymorphism information content was estimated at 0.297 and the average diversity indices for the effective number of alleles, Shannon's information index, and overall gene diversity were 1.481, 0.443, and 0.265, respectively. The analysis of molecular variance (AMOVA) revealed that 69% of the genetic variation was within the population. A model-based STRUCTURE algorithm divided the entire germplasm into four populations and one un-classified population, the genotypes G42 (originating in Egypt) and G128 (originating in the United States), showed the highest genetic distance (0.996) so these genotypes could be suggested for breeding programs as parental lines.

CONCLUSIONS

This is the first investigation using an iPBS-retrotransposon marker system to examine the genetic diversity and population structure of upland cotton germplasm. The rich diversity found in upland cotton germplasm could be exploited as a genetic resource when developing breeding programs and could also help with efforts to breed cotton around the world. These findings also show the applicability and effectiveness of iPBS-retrotransposons for the molecular characterization of cotton germplasm.

Morphological and molecular characterization of some Tomato (Solanum lycopersicum L.) genotypes collected from Erzincan Province of Turkey

BACKGROUND

Turkey is a country with different geographical features and therefore it is extremely diverse in plant diversity. Tomato is one of the most important vegetables produced both in the world and in Turkey. In this study, it was aimed to determine the genetic diversity of 24 tomato genotypes collected from local farmers from "Center villages" and "Üzümlü" district in Erzincan province.

METHODS AND RESULTS

Morphological (qualitative and quantitative) and ISSR(Inter Simple Sequence Repeat)were used to determine genetic diversity among genotypes. Contribution rates of morphological properties to the first three main components differed. Genotype 24 was found to be higher than other genotypes with important quantitative morphological features such as fruit length, fruit width, fruit weight and soluble solid content (SSC). Considering the overall morphological traits, a wide variation was detected between genotypes. Genotypes were divided into 2 main groups according to the evaluation with molecular markers. According to the molecular findings obtained. The polymorphism rate ranged from 0 to 100% and the average polymorphism rate was calculated as 80%.

CONCLUSIONS

Present findings revealed the diversity in tomato genotypes collected from Erzincan province and may constitute the bases for further breeding studies in tomato and will bring an integrity in tomato identification studies.

iPBS-Retrotransposon Markers in the Analysis of Genetic Diversity among Common Bean (Phaseolus vulgaris L.) Germplasm from Türkiye

Beans are legumes that play extremely important roles in human nutrition, serving as good sources of protein, vitamins, minerals, and antioxidants. In this study, we tried to elucidate the genetic diversity and population structure of 40 Turkish bean (Phaseolus vulgaris L.) local varieties and 5 commercial cultivars collected from 8 different locations in Erzurum-Ispir by using inter-primary binding site (iPBS) retrotransposon markers. For molecular characterization, the 26 most polymorphic iPBS primers were used; 52 bands per primer and 1350 bands in total were recorded. The mean polymorphism information content was 0.331. Various diversity indices, such as the mean effective allele number (0.706), mean Shannon’s information index (0.546), and gene diversity (0.361) revealed the presence of sufficient genetic diversity in the germplasm examined. Molecular analysis of variance (AMOVA) revealed that 67% of variation in bean germplasm was due to differences within populations. In addition, population structure analysis exposed all local and commercial bean varieties from five sub-populations. Expected heterozygosity values ranged between 0.1567 (the fourth sub-population) and 0.3210 (first sub-population), with an average value of 0.2103. In contrary, population differentiation measurement (Fst) was identified as 0.0062 for the first sub-population, 0.6372 for the fourth subpopulations. This is the first study to investigate the genetic diversity and population structure of bean germplasm in Erzurum-Ispir region using the iPBS-retrotransposon marker system. Overall, the current results showed that iPBS markers could be used consistently to elucidate the genetic diversity of local and commercial bean varieties and potentially be included in future studies examining diversity in a larger collection of local and commercial bean varieties from different regions.

Deciphering the iPBS retrotransposons based genetic diversity of nanoparticles induced in Vitro seedlings of industrial hemp (Cannabis sativa L.)

BACKGROUND

The phytochemicals contained in hemp are highly significant and can be modified or altered by employing in vitro elicitors like nanoparticles (NPs). Application of NPs type, concentration, and treatment time regulate the germination, growth, and phytohemicals.

METHODS AND RESULTS

In vitro sterilized seeds of cannabis were augmented on Murashige and Skoog (MS) medium supplemented with silver (Ag) and titanium dioxide (TiO₂) nanoparticles at different concentrations (0, 200, 400, 800, 1200 and 1600 mg/L) for one month. Results revealed that supplementation of NPs resulted in reduced germination (%), root length and longer shoots and seedling fresh wt compared to control.

CONCLUSIONS

Maximum germination was recorded on MS medium supplemented with 1600 mg/L TiO₂NPs (92.50%) followed by 1600 mg/L AgNPs (80.00%). Supplementation of 800 mg/L AgNPs yielded longer shoots, roots, seedlings fresh weight, and chlorophyll-b contents compared to all other treatments. Whereas, maximum chlorophyll-a, carotenoids, and MDA contents were attributed to 1200 mg/L TiO₂NPs. PCR results using eight iPBS-retrotransposons primers yielded a total of 101 bands with 98 polymorphic bands. Whereas, minimum (0.28) and maximum (0.42) gene diversity was associated with 2095 and 2228 primers.

Evaluation of genetic diversity by morphological, biochemical and molecular markers in sour cherry genotypes

BACKGROUND

Turkey's ecological and geographical diversity allows the cultivation of most plant species that have economic importance throughout the country. One of these species, sour cherry, is among the stone fruits that are very important for human health. This study aimed to determine genetic diversity of 21 sour cherry genotypes grown from seed in Kelkit Valley and standard Kutahya cultivars.

METHODS AND RESULTS

Morphological, biochemical, and molecular marker techniques [ISSR (Inter Simple Sequence Repeat)] was used to determine genetic diversity. G11 in terms of fruit characteristics, particularly weight with 4.81 g, and G20 in terms of leaf width produced better results than the other genotypes with 40.10 mm. Molecular marker analysis, a total of 70 bands were obtained from 12 ISSR primers and 49 of them were polymorphic. The mean polymorphism rate in the study was 70%, and the DICE's similarity coefficient of genotypes differed between 0.81 and 0.95. Polymorphism percentages of the ISSR primers varied from 20 to 100%. In biochemical analyzes, G17 with 140.18 mg QE/100 g in total flavonoids content, G19 with 208.63 mg GAE/100 g in total phenolics content, G19 with 8.33 mg cyn-3-gluc/100 g in total anthocyanin content compared to other genotypes prominent genotypes.

CONCLUSION

The use of the obtained results in breeding studies to be carried out on this species, as well as the detection and protection of gene sources, may be beneficial for researchers.