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Daunoras J, Kačergius A, Gudiukaitė R. Role of Soil Microbiota Enzymes in Soil Health and Activity Changes Depending on Climate Change and the Type of Soil Ecosystem. BIOLOGY 2024; 13:85. [PMID: 38392304 PMCID: PMC10886310 DOI: 10.3390/biology13020085] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 01/25/2024] [Accepted: 01/27/2024] [Indexed: 02/24/2024]
Abstract
The extracellular enzymes secreted by soil microorganisms play a pivotal role in the decomposition of organic matter and the global cycles of carbon (C), phosphorus (P), and nitrogen (N), also serving as indicators of soil health and fertility. Current research is extensively analyzing these microbial populations and enzyme activities in diverse soil ecosystems and climatic regions, such as forests, grasslands, tropics, arctic regions and deserts. Climate change, global warming, and intensive agriculture are altering soil enzyme activities. Yet, few reviews have thoroughly explored the key enzymes required for soil fertility and the effects of abiotic factors on their functionality. A comprehensive review is thus essential to better understand the role of soil microbial enzymes in C, P, and N cycles, and their response to climate changes, soil ecosystems, organic farming, and fertilization. Studies indicate that the soil temperature, moisture, water content, pH, substrate availability, and average annual temperature and precipitation significantly impact enzyme activities. Additionally, climate change has shown ambiguous effects on these activities, causing both reductions and enhancements in enzyme catalytic functions.
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Affiliation(s)
- Jokūbas Daunoras
- Life Sciences Center, Vilnius University, Sauletekis Av. 7, LT-10257 Vilnius, Lithuania
| | - Audrius Kačergius
- Lithuanian Research Centre for Agriculture and Forestry, Kedainiai Distr., LT-58344 Akademija, Lithuania
| | - Renata Gudiukaitė
- Life Sciences Center, Vilnius University, Sauletekis Av. 7, LT-10257 Vilnius, Lithuania
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Yu M, Wu M, Secundo F, Liu Z. Detection, production, modification, and application of arylsulfatases. Biotechnol Adv 2023; 67:108207. [PMID: 37406746 DOI: 10.1016/j.biotechadv.2023.108207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 06/16/2023] [Accepted: 06/30/2023] [Indexed: 07/07/2023]
Abstract
Arylsulfatase is a subset of sulfatase which catalyzes the hydrolysis of aryl sulfate ester. Arylsulfatase is widely distributed among microorganisms, mammals and green algae, but the arylsulfatase-encoding gene has not yet been found in the genomes of higher plants so far. Arylsulfatase plays an important role in the sulfur flows between nature and organisms. In this review, we present the maturation and catalytic mechanism of arylsulfatase, and the recent literature on the expression and production of arylsulfatase in wild-type and engineered microorganisms, as well as the modification of arylsulfatase by genetic engineering are summarized. We focus on arylsulfatases from microbial origin and give an overview of different assays and substrates used to determine the arylsulfatase activity. Furthermore, the researches about arylsulfatase application on the field of agar desulfation, soil sulfur cycle and soil evaluation are also discussed. Finally, the perspectives concerning the future research on arylsulfatase are prospected.
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Affiliation(s)
- Mengjiao Yu
- Qingdao Key Laboratory of Food Biotechnology, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, PR China; Key Laboratory of Biological Processing of Aquatic Products, China National Light Industry, Qingdao 266404, PR China
| | - Meixian Wu
- Qingdao Key Laboratory of Food Biotechnology, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, PR China; Key Laboratory of Biological Processing of Aquatic Products, China National Light Industry, Qingdao 266404, PR China
| | - Francesco Secundo
- Istituto di Scienze e Tecnologie Chimiche "Giulio Natta", Consiglio Nazionale delle Ricerche, via Mario Bianco 9, Milan 20131, Italy
| | - Zhen Liu
- Qingdao Key Laboratory of Food Biotechnology, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, PR China; Key Laboratory of Biological Processing of Aquatic Products, China National Light Industry, Qingdao 266404, PR China.
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Wyszkowska J, Borowik A, Zaborowska M, Kucharski J. Evaluation of the Usefulness of Sorbents in the Remediation of Soil Exposed to the Pressure of Cadmium and Cobalt. MATERIALS (BASEL, SWITZERLAND) 2022; 15:ma15165738. [PMID: 36013875 PMCID: PMC9415538 DOI: 10.3390/ma15165738] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 08/09/2022] [Accepted: 08/17/2022] [Indexed: 06/01/2023]
Abstract
An undesirable side effect of economic progress is increasingly severe pollution with heavy metals, responsible for the degradation of ecosystems, including soil resources. Hence, this research focused on examining six adsorbents in order to distinguish a reactive mineral with the highest capacity to remediate soils contaminated with heavy metals. To this end, the soil was polluted with Co2+ and Cd2+ by applying the metals in concentrations of 100 mg kg-1 d.m. The extent of soil equilibrium disturbances was assessed by evaluating the response of the soil microbiome, activity of seven soil enzymes, and the yields of Helianthus annuus L. Six sorbents were evaluated: a molecular sieve, expanded clay (ExClay), halloysite, zeolite, sepiolite and biochar. Co2+ and Cd2+ proved to be significant inhibitors of the soil's microbiological and biochemical parameters. Organotrophic bacteria among the analysed groups of microorganisms and dehydrogenases among the soil enzymes were most sensitive to the effects of the metals. Both metals significantly distorted the growth and development of sunflower, with Co2+ having a stronger adverse impact on the synthesis of chlorophyll. The molecular sieve and biochar were the sorbents that stimulated the multiplication of microorganisms and enzymatic activity in the contaminated soil. The activity of enzymes was also stimulated significantly by zeolite and sepiolite, while the growth of Helianthus annuus L. biomass was stimulated by the molecular sieve, which can all be considered the most useful reactive materials in the remediation of soils exposed to Co2+ and Cd2+.
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Boros-Lajszner E, Wyszkowska J, Kucharski J. Phytoremediation of soil contaminated with nickel, cadmium and cobalt. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2021; 23:252-262. [PMID: 32854521 DOI: 10.1080/15226514.2020.1807907] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
This pot experiment analyzed the use of Brassica napus, Elymus elongatus and Zea mays in the removal of Cd2+ Co2+ and Ni2+ from the soil. The utility of the plants under study for phytoremediation was analyzed based on the biomass of the aboveground parts and roots and the accumulation of metals, bioaccumulation, bioconcentration and translocation capability in the above-ground parts and roots. The effect of heavy metals on the soil enzyme activity and soil physicochemical properties was also determined. Among the species under study, only E. elongatus was found to be suitable for Cd2+ phytoextraction, whereas E. elongatus and Z. mays proved to be suitable for phytostabilisation of Cd2+ and Co2+ because the criterion of the accumulation of metals in the roots at a sufficient level was fulfilled. The index of bioaccumulation in roots was greater than one. Both plant species met the second condition which determined the utility for phytostabilisation, as since the transport of Cd2+ Co2+ and Ni2+ from the roots to the above-ground parts was limited.
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Affiliation(s)
- Edyta Boros-Lajszner
- Department of Microbiology, University of Warmia and Mazury in Olsztyn, Olsztyn, Poland
| | - Jadwiga Wyszkowska
- Department of Microbiology, University of Warmia and Mazury in Olsztyn, Olsztyn, Poland
| | - Jan Kucharski
- Department of Microbiology, University of Warmia and Mazury in Olsztyn, Olsztyn, Poland
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Borowik A, Wyszkowska J, Kucharski M, Kucharski J. The Role of Dactylis Glomerata and Diesel Oil in the Formation of Microbiome and Soil Enzyme Activity. SENSORS 2020; 20:s20123362. [PMID: 32545819 PMCID: PMC7349710 DOI: 10.3390/s20123362] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 06/08/2020] [Accepted: 06/11/2020] [Indexed: 12/12/2022]
Abstract
The global demand for petroleum contributes to a significant increase in soil pollution with petroleum-based products that pose a severe risk not only to humans but also to plants and the soil microbiome. The increasing pollution of the natural environment urges the search for effective remediation methods. Considering the above, the objective of this study was to determine the usability of Dactylis glomerata for the degradation of hydrocarbons contained in diesel oil (DO), as well as the effects of both the plant tested and DO on the biochemical functionality and changes in the soil microbiome. The experiment was conducted in a greenhouse with non-polluted soil as well as soil polluted with DO and phytoremediated with Dactylis glomerata. Soil pollution with DO increased the numbers of microorganisms and soil enzymes and decreased the value of the ecophysiological diversity index of microorganisms. Besides, it contributed to changes in the bacterial structure at all taxonomic levels. DO was found to increase the abundance of Proteobacteria and to decrease that of Actinobacteria, Acidobacteria, Chloroflexi, Gemmatimonadetes and Firmicutes. In the non-polluted soil, the core microbiome was represented by Kaistobacter and Rhodoplanes, whereas in the DO-polluted soil, it was represented by Parvibaculum and Rhodococcus. In soil sown with Dactylis glomerata, gasoline fraction (C6–C12) degradation was higher by 17%; mineral oil (C12–C35), by 9%; benzene, by 31%; anthracene, by 12%; chrysene, by 38%; benzo(a)anthracene, by 19%; benzo(a)pyrene, by 17%; benzo(b)fluoranthene, by 15%; and benzo(k)fluoranthene, by 18% than in non-sowed soil. To conclude, Dactylis glomerata proved useful in degrading DO hydrocarbons and, therefore, may be recommended for the phytoremediation of soils polluted with petroleum-based products. It has been shown that the microbiological, biochemical and chemical tests are fast and sensitive in the diagnosis of soil contamination with petroleum products, and a combination of all these tests gives a reliable assessment of the state of soils.
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Zaborowska M, Wyszkowska J, Kucharski J. Soil enzyme response to bisphenol F contamination in the soil bioaugmented using bacterial and mould fungal consortium. ENVIRONMENTAL MONITORING AND ASSESSMENT 2019; 192:20. [PMID: 31820108 DOI: 10.1007/s10661-019-7999-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2019] [Accepted: 11/26/2019] [Indexed: 06/10/2023]
Abstract
The concept of the study resulted from the lack of accurate data on the toxicity of bisphenol F (BPF) coinciding with the need for immediate changes in the global economic policy eliminating the effects of environmental contamination with bisphenol A (BPA). The aim of the experiment was to determine the scale of the previously unstudied inhibitory effect of BPF on soil biochemical activity. To this end, in a soil subjected to increasing BPF pressure at three contamination levels of 0, 5, 50 and 500 mg BPF kg-1 DM, responses of soil enzymes, dehydrogenases, catalase, urease, acid phosphatase, alkaline phosphatase, arylsulphatase and β-glucosidase, were examined. Moreover, the study suggested a potentially effective way of biostimulating the soil by means of bioaugmentation with a consortium of four bacterial species: Pseudomonas umsongensis, Bacillus mycoides, Bacillus weihenstephanensis and Bacillus subtilis, and the following fungal species: Mucor circinelloides, Penicillium daleae, Penicillium chrysogenum and Aspergillus niger. It was found that BPF was a controversial BPA analogue due to the fact that it contributed to the inhibition of all the enzyme activities. Dehydrogenases proved to be the most sensitive to bisphenol contamination of the soil. The addition of 5 mg BPF kg-1 DM of soil triggered an escalation of the inhibition comparable to that for the other enzymes only after exposing them to the effects of 50 and 500 mg BPF kg-1 DM of soil. Moreover, BPF generated low activity of urease, acid phosphatase, alkaline phosphatase and β-glucosidase. Bacterial inoculum increased the activity of urease, β-glucosidase, catalase and alkaline phosphatase. Seventy-six percent of BPF underwent biodegradation during the 5 days of the study.
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Affiliation(s)
- Magdalena Zaborowska
- Department of Microbiology, University of Warmia and Mazury in Olsztyn, Plac Łódzki 3, 10-727, Olsztyn, Poland
| | - Jadwiga Wyszkowska
- Department of Microbiology, University of Warmia and Mazury in Olsztyn, Plac Łódzki 3, 10-727, Olsztyn, Poland.
| | - Jan Kucharski
- Department of Microbiology, University of Warmia and Mazury in Olsztyn, Plac Łódzki 3, 10-727, Olsztyn, Poland
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Zaborowska M, Kucharski J, Wyszkowska J. Biochemical and microbiological activity of soil contaminated with o-cresol and biostimulated with Perna canaliculus mussel meal. ENVIRONMENTAL MONITORING AND ASSESSMENT 2018; 190:602. [PMID: 30242485 PMCID: PMC6153515 DOI: 10.1007/s10661-018-6979-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/21/2018] [Accepted: 09/13/2018] [Indexed: 06/08/2023]
Abstract
The choice of the study subject was a consequence of the growing interest in volatile organic compounds which are strongly dispersed in the environment. The knowledge of o-cresol's capability for being broken down by bacteria should be supplemented by studies aimed at determining the biochemical and microbiological activity of soils. o-Cresol was applied at the following rates: 0, 0.1, 1, 10, and 50 mg of o-cresol kg-1 d.m. of soil to determine its effect on the biological properties of soil. The activity of dehydrogenases, catalase, urease, acid phosphatase, alkaline phosphatase, arylsulfatase, and β-glucosidase, the eight groups of microorganism counts, was determined in soil samples after 45 days and the barley yield was determined. Preventive biostimulation with Perna canaliculus mussel meal, illustrated by means of the index of fertility (IF), was conducted in order to eliminate the adverse effect of o-cresol. The soil and crop resistance index (RS) was used to illustrate the response of barley, and R:S-the rhizosphere effect index was used to determine the effect of the crop on the enzymatic activity of soil. o-Cresol had a beneficial effect on the biological activity of soil at an acceptable rate of 0.1 and 1 mg kg-1 d.m. of soil, and it became its inhibitor after being applied at 10 and 50 mg kg-1 d.m. of soil, which also brought about a decrease in the resistance of spring barley. Dehydrogenases are the most sensitive, and catalase is the least sensitive, to the pressure of o-cresol in soil. Mussel meal can be recommended as a biostimulator of soil fertility. It also eliminated the negative effect of o-cresol on its biological activity.
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Affiliation(s)
- Magdalena Zaborowska
- University of Warmia and Mazury in Olsztyn, Plac Łódzki 3, 10-727 Olsztyn, Poland
| | - Jan Kucharski
- University of Warmia and Mazury in Olsztyn, Plac Łódzki 3, 10-727 Olsztyn, Poland
| | - Jadwiga Wyszkowska
- University of Warmia and Mazury in Olsztyn, Plac Łódzki 3, 10-727 Olsztyn, Poland
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