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Patel AK, Singhania RR, Albarico FPJB, Pandey A, Chen CW, Dong CD. Organic wastes bioremediation and its changing prospects. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 824:153889. [PMID: 35181362 DOI: 10.1016/j.scitotenv.2022.153889] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 02/04/2022] [Accepted: 02/11/2022] [Indexed: 05/21/2023]
Abstract
Increasing inappropriate anthropogenic activities and industrialization have resulted in severe environmental pollution worldwide. Their effective treatment is vital for general health concerns. Depending on the characteristics of pollutants, the severity of pollution may differ. For sustainable treatment of polluted environments, bioremediation is accepted as the most efficient, economical, and environmentally friendly method hence largely preferred. However, every bioremediation technique has its own unique advantages and limitations due to its defined applications criteria. In bioremediation, microorganisms play a decisive role in detoxification by degrading, mineralizing and accumulating various forms of harmful and biodegradable pollutants from the surroundings and transforming them into less lethal forms. Bioremediation is performed ex-situ or in-situ, based on location of polluted site as well as characteristics, type and strength of the pollutants. Furthermore, the most popular methodologies for bioremediation include bioaugmentation, biostimulation, bioattenuation among others which depend on the prevailing environmental factors into the microbial system. Implementing them appropriately and effectively under ex-situ or in-situ method is extremely important not only for obtaining efficient treatment but also for the best economic, environmental, and social impacts. Therefore, this review aims to analyze various bioremediation methods for organic pollutants remediation from soil/sediments and wastewater, their strength, limitation, and insights for the selection of appropriate bioremediation techniques based on nature, types, degree, and location of the pollution. The novelty aspect of the article is to give updates on several key supporting technologies which have recently emerged and exhibited great potential to enhance the present bioremediation efficiency such as nanobubble, engineered biochar, mixotrophic microalgae, nanotechnology etc. Moreover, amalgamation of these technologies with existing bioremediation facilities are significantly changing the scenario and scope of environmental remediation towards sustainable bioremediation.
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Affiliation(s)
- Anil Kumar Patel
- Department of Marine Environmental Engineering, National Kaohsiung University of Science and Technology, Kaohsiung City 81157, Taiwan; Sustainable Environment Research Center, National Kaohsiung University of science and Technology, Kaohsiung City 81157, Taiwan; Centre for Energy and Environmental Sustainability, Lucknow 226 029, Uttar Pradesh, India.
| | - Reeta Rani Singhania
- Department of Marine Environmental Engineering, National Kaohsiung University of Science and Technology, Kaohsiung City 81157, Taiwan; Sustainable Environment Research Center, National Kaohsiung University of science and Technology, Kaohsiung City 81157, Taiwan; Centre for Energy and Environmental Sustainability, Lucknow 226 029, Uttar Pradesh, India
| | - Frank Paolo Jay B Albarico
- Department of Marine Environmental Engineering, National Kaohsiung University of Science and Technology, Kaohsiung City 81157, Taiwan; Institute of Aquatic Science and Technology, National Kaohsiung University of Science and Technology, Kaohsiung City 81157, Taiwan; Fisheries and Marine Research Station (FaMaRS), Fisheries and Marine Sciences Department, College of Fisheries and Allied Sciences, Northern Negros State College of Science and Technology, Sagay City 6122, Philippines
| | - Ashok Pandey
- Centre for Energy and Environmental Sustainability, Lucknow 226 029, Uttar Pradesh, India; Centre for Innovation and Translational Research, CSIR-Indian Institute of Toxicology Research, Lucknow 226 001, India; Sustainability Cluster, School of Engineering, University of Petroleum and Energy Studies, Dehradun 248 007, Uttarakhand, India
| | - Chiu-Wen Chen
- Department of Marine Environmental Engineering, National Kaohsiung University of Science and Technology, Kaohsiung City 81157, Taiwan; Sustainable Environment Research Center, National Kaohsiung University of science and Technology, Kaohsiung City 81157, Taiwan
| | - Cheng-Di Dong
- Department of Marine Environmental Engineering, National Kaohsiung University of Science and Technology, Kaohsiung City 81157, Taiwan; Sustainable Environment Research Center, National Kaohsiung University of science and Technology, Kaohsiung City 81157, Taiwan.
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Vasco-Correa J, Capouya R, Shah A, Mitchell TK. Sequential fungal pretreatment of unsterilized Miscanthus: changes in composition, cellulose digestibility and microbial communities. Appl Microbiol Biotechnol 2022; 106:2263-2279. [PMID: 35171342 DOI: 10.1007/s00253-022-11833-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 02/08/2022] [Accepted: 02/10/2022] [Indexed: 11/30/2022]
Abstract
A sequential fungal pretreatment of Miscanthus × giganteus was conducted by mixing unsterilized Miscanthus with material previously colonized with the white-rot fungus Ceriporiopsis subvermispora. For three generations, each generation started with inoculation by mixing unsterilized fresh Miscanthus with end material from the previous generation and ended after 28 days of incubation at 28 °C. After the first generation, the cellulose digestibility of the material doubled, compared to that of the unsterilized Miscanthus, but the second and third generations showed no enhancements in cellulose digestibility. Furthermore, high degradation of Miscanthus structural carbohydrates occurred during the first generation. A microbial community study showed that, even though the fungal community of the material previously colonized by C. subvermispora was composed mainly of this fungus (> 99%), by the first generation its relative abundance was down to only 9%, and other microbes had prevailed. Additionally, changes in the bacterial community occurred that might be associated with unwanted cellulose degradation in the system. This reiterates the necessity of feedstock microbial load reduction for the stability and reproducibility of fungal pretreatment of lignocellulosic biomass. KEY POINTS: • Sequential fungal pretreatment of unsterilized Miscanthus was unsuccessful. • Feedstock changes with white-rot fungi favored the growth of other microorganisms. • Feedstock microbial reduction is necessary for pretreatment with C. subvermispora.
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Affiliation(s)
- Juliana Vasco-Correa
- Department of Food, Agricultural and Biological Engineering, The Ohio State University/Ohio Agricultural Research and Development Center, Wooster, OH, 44691, USA. .,Department of Agricultural and Biological Engineering, Penn State University, University Park, PA, 16802, USA.
| | - Rachel Capouya
- Department of Plant Pathology, The Ohio State University, Columbus, OH, 43210, USA
| | - Ajay Shah
- Department of Food, Agricultural and Biological Engineering, The Ohio State University/Ohio Agricultural Research and Development Center, Wooster, OH, 44691, USA
| | - Thomas K Mitchell
- Department of Plant Pathology, The Ohio State University, Columbus, OH, 43210, USA
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3
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Stachurová T, Piková H, Bartas M, Semerád J, Svobodová K, Malachová K. Beta-lactam resistance development during the treatment processes of municipal wastewater treatment plants. CHEMOSPHERE 2021; 280:130749. [PMID: 33971421 DOI: 10.1016/j.chemosphere.2021.130749] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Revised: 04/05/2021] [Accepted: 04/29/2021] [Indexed: 05/29/2023]
Abstract
This work monitored the effect of a municipal and a village wastewater treatment plant (WWTP) technology on the fate of beta-lactam resistance genes in bacterial populations in different phases of the wastewater treatment process. In case of the municipal WWTP1, the bacteria possessing a high ampicillin resistance (minimal inhibitory concentration (MIC) values of 20 mg/mL) accumulated in the sedimentation tank, which was accompanied with a higher concentration of ampicillin in the wastewater samples (28.09 ng/L) and an increase in the relative abundance of the blaTEM gene in the bacterial population. However, an opposite trend was revealed with the blaNDM-1 gene, making the sedimentation processes of WWTP1 crucial only for the accumulation of the blaTEM gene. Similarly, the comparison with the WWTP2 showed that the accumulation of the ampicillin resistance in bacterial population probably depended on the WWTP technology and wastewater composition. Out of the four tested resistance genes (blaTEM, blaKPC, blaNDM-1, and blaOXA-48), blaTEM and blaNDM-1 genes were the only two detected in this study. According to NGS analysis of bacterial 16 S rRNA gene, Gammaproteobacteria dominated the ampicillin-resistant bacteria of the WWTP sedimentation tanks. Their relative abundance in the bacterial population also increased during the sedimentation processes in WWTP1. It could indicate the role of the bacterial taxon in ampicillin resistance accumulation in this WWTP and show that only 9.29% of the original bacterial population from the nitrification tank is involved in the documented shifts in beta-lactam resistance of the bacterial population.
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Affiliation(s)
- Tereza Stachurová
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Chittussiho 10, CZ-710 00, Ostrava, Czech Republic.
| | - Hana Piková
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Chittussiho 10, CZ-710 00, Ostrava, Czech Republic
| | - Martin Bartas
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Chittussiho 10, CZ-710 00, Ostrava, Czech Republic
| | - Jaroslav Semerád
- Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, CZ-142 20, Prague, Czech Republic; Institute for Environmental Studies, Faculty of Science, Charles University, Benátská 2, CZ-128 01, Prague, Czech Republic
| | - Kateřina Svobodová
- Institute of Medical Biochemistry and Laboratory Diagnostics, Clinical Microbiology and ATB Center, General University Hospital in Prague, U Nemocnice 2, CZ-128 08, Prague, Czech Republic
| | - Kateřina Malachová
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Chittussiho 10, CZ-710 00, Ostrava, Czech Republic
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Espinosa-Ortiz EJ, Rene ER, Gerlach R. Potential use of fungal-bacterial co-cultures for the removal of organic pollutants. Crit Rev Biotechnol 2021; 42:361-383. [PMID: 34325585 DOI: 10.1080/07388551.2021.1940831] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Fungi and bacteria coexist in a wide variety of natural and artificial environments which can lead to their association and interaction - ranging from antagonism to cooperation - that can affect the survival, colonization, spatial distribution and stress resistance of the interacting partners. The use of polymicrobial cultivation approaches has facilitated a more thorough understanding of microbial dynamics in mixed microbial communities, such as those composed of fungi and bacteria, and their influence on ecosystem functions. Mixed (multi-domain) microbial communities exhibit unique associations and interactions that could result in more efficient systems for the degradation and removal of organic pollutants. Several previous studies have reported enhanced biodegradation of certain pollutants when using combined fungal-bacterial treatments compared to pure cultures or communities of either fungi or bacteria (single domain systems). This article reviews: (i) the mechanisms of pollutant degradation that can occur in fungal-bacterial systems (e.g.: co-degradation, production of secondary metabolites, enhancement of degradative enzyme production, and transport of bacteria by fungal mycelia); (ii) case studies using fungal-bacterial co-cultures for the removal of various organic pollutants (synthetic dyes, polycyclic aromatic hydrocarbons, pesticides, and other trace or volatile organic compounds) in different environmental matrices (e.g. water, gas/vapors, soil); (iii) the key aspects of engineering artificial fungal-bacterial co-cultures, and (iv) the current challenges and future perspectives of using fungal-bacterial co-cultures for environmental remediation.
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Affiliation(s)
- Erika J Espinosa-Ortiz
- Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA.,Department of Chemical and Biological Engineering, Montana State University, Bozeman, MT, USA
| | - Eldon R Rene
- Department of Water Supply, Sanitary and Environmental Engineering, IHE Delft Institute for Water Education, 2601DA Delft, The Netherlands
| | - Robin Gerlach
- Center for Biofilm Engineering, Montana State University, Bozeman, MT, USA.,Department of Chemical and Biological Engineering, Montana State University, Bozeman, MT, USA
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Pereira JCV, Serbent MP, Skoronski E. Application of immobilized mycelium-based pellets for the removal of organochlorine compounds: a review. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2021; 83:1781-1796. [PMID: 33905352 DOI: 10.2166/wst.2021.093] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Organochlorines have diverse structures and applications and are included in the list of persistent organic pollutants (POPs) due to their toxicity and environmental persistence. The reduced capacity of conventional wastewater treatment plants to remove these compounds encourages the development of cost-effective and efficient remediation approaches. Fungal biotechnology can contribute to the development of these technologies through their enzymatic machinery but faces several drawbacks related to the use of dispersed mycelium. In this sense, investigations concerning the degradation of organochlorines using immobilized fungi demonstrated an increase in contaminant removal efficiency compared with degradation by free cells. Despite this interest, the mechanisms of immobilized fungi have not been comprehensively reviewed. In this paper, recent advances of laboratory and field studies in organochlorine compounds removal by fungi are reviewed, focusing on the role of immobilization techniques. Firstly, the mechanisms of organochlorines bioconversion by fungi and the factors affecting enzyme activity are elucidated and discussed in detail. Then, the main targeted compounds, fungi, technics, and materials used for immobilization are discussed, as well as their advantages and limitations. Furthermore, critical points for future studies of fungi immobilization for organochlorine removal are proposed.
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Affiliation(s)
- J C V Pereira
- Department of Sanitary Engineering, State University of Santa Catarina, 2822 Dr Getúlio Vargas Road, Ibirama, Brazil E-mail:
| | - M P Serbent
- Department of Sanitary Engineering, State University of Santa Catarina, 2822 Dr Getúlio Vargas Road, Ibirama, Brazil E-mail:
| | - E Skoronski
- Department of Environmental and Sanitary Engineering, State University of Santa Catarina, 2090 Luís de Camões Avenue, Lages, Brazil
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Spennati F, Ricotti A, Mori G, Siracusa G, Becarelli S, Gregorio SD, Tigini V, Varese GC, Munz G. The role of cosubstrate and mixing on fungal biofilm efficiency in the removal of tannins. ENVIRONMENTAL TECHNOLOGY 2020; 41:3515-3523. [PMID: 31072243 DOI: 10.1080/09593330.2019.1615128] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2018] [Accepted: 02/05/2019] [Indexed: 06/09/2023]
Abstract
Tannins are polyphenolic compounds produced by plants and they are used in industrial vegetable tanning of leather. Tannins represent one of the low biodegradability substances in tannery wastewaters with high recalcitrant soluble chemical oxygen demand, furthermore high concentration of tannins can inhibit biological treatment. In the present study, four novel rotating submerged packed bed reactors were inoculated with a selected fungal strain to reach a biological degradation of tannins in non-sterile conditions. The selected fungal strain, Aspergillus tubingensis MUT 990, was immobilised in polyurethane foam cubes carriers and inserted inside a submerged rotating cage reactors. The reactors were feed with a solution composed of four tannins: Quebracho (Schinopsis spp.), Wattle (Mimosa spp.), Chestnut (Castanea spp.) and Tara (Caesalpinia spp.). Four reactors with a volume of 4 L each were used, the co-substrate was pure malt extract, the hydraulic retention time was 24 h and the pH setpoint was 5.5. The reactors configuration was chosen to allow the study of the effect of rotation and the co-substrate addition on tannins removal. The experiment lasted two months and it was achieved 80% of chemical oxygen demand and up to 90% dissolved organic carbon removal, furthermore it was detected an important tannase activity.
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Affiliation(s)
- Francesco Spennati
- Department of Civil and Environmental Engineering, University of Florence, Firenze, Italy
| | | | | | - Giovanna Siracusa
- MUT, Department of Life Sciences and Systems Biology, University of Turin, Torino, Italy
| | - Simone Becarelli
- MUT, Department of Life Sciences and Systems Biology, University of Turin, Torino, Italy
| | - Simona Di Gregorio
- MUT, Department of Life Sciences and Systems Biology, University of Turin, Torino, Italy
| | | | | | - Giulio Munz
- Department of Civil and Environmental Engineering, University of Florence, Firenze, Italy
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Šlosarčíková P, Plachá D, Malachová K, Rybková Z, Novotný Č. Biodegradation of Reactive Orange 16 azo dye by simultaneous action of Pleurotus ostreatus and the yeast Candida zeylanoides. Folia Microbiol (Praha) 2020; 65:629-638. [PMID: 31970597 DOI: 10.1007/s12223-019-00767-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2019] [Accepted: 12/23/2019] [Indexed: 02/06/2023]
Abstract
The purpose was to investigate a simultaneous biodegradation of the recalcitrant monoazo dye Reactive Orange 16 (RO16) in a mixed culture consisting of a biofilm of Pleurotus ostreatus-colonizing polyamide carrier and a suspension of the yeast Candida zeylanoides to see their biological interactions and possible synergistic action during degradation. Decolorization in the mixed culture was more effective than in the fungal monoculture, the respective decolorizations reaching 87.5% and 70% on day 11. The proliferation of yeast was reduced compared with the C. zeylanoides monoculture but enabled the yeast to participate in decolorization. The interaction of P. ostreatus with the yeast resulted in a gradual decrease of fungal manganese-dependent peroxidase (MnP) and laccase activities. Gas chromatography-mass spectrometry (GC-MS) analysis of the degradation products brought evidence that P. ostreatus split the dye molecule asymmetrically to provide 4-(ethenylsulfonyl) benzene whose concentration was much decreased in the mixed culture suggesting its increased metabolization in the presence of the yeast. In contrast, C. zeylanoides split the azo bond symmetrically producing the metabolites 4-(ethenylsulfonyl) aniline and α-hydroxybenzenepropanoic acid. Those metabolites were rapidly degraded in the mixed culture. A novel aspect is represented by the evidence of a mutual cooperative action of the fungal and yeast microorganisms in the mixed culture resulting in rapid decolorization and degradation of the dye.
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Affiliation(s)
- Pavlína Šlosarčíková
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Chittussiho 10, 710 00, Slezská Ostrava, Czech Republic.
| | - Daniela Plachá
- Nanotechnology Centre VŠB-Technical University of Ostrava, 17. listopadu 15/2172, 708 33, Ostrava-Poruba, Czech Republic
| | - Kateřina Malachová
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Chittussiho 10, 710 00, Slezská Ostrava, Czech Republic
| | - Zuzana Rybková
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Chittussiho 10, 710 00, Slezská Ostrava, Czech Republic
| | - Čeněk Novotný
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Chittussiho 10, 710 00, Slezská Ostrava, Czech Republic.,Laboratory of Environmental Biotechnology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 142 20, Prague 4, Czech Republic
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9
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Svobodová K, Semerád J, Petráčková D, Novotný Č. Antibiotic Resistance in Czech Urban Wastewater Treatment Plants: Microbial and Molecular Genetic Characterization. Microb Drug Resist 2018; 24:830-838. [DOI: 10.1089/mdr.2017.0406] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Affiliation(s)
- Kateřina Svobodová
- Laboratory of Environmental Biotechnology, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic
| | - Jaroslav Semerád
- Laboratory of Environmental Biotechnology, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic
- Faculty of Science, Institute for Environmental Studies, Charles University, Prague, Czech Republic
| | - Denisa Petráčková
- Laboratory of Post-Transcriptional Control of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic
| | - Čeněk Novotný
- Laboratory of Environmental Biotechnology, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic
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Tigini V, Bevione F, Prigione V, Poli A, Ranieri L, Spennati F, Munz G, Varese GC. Tannery mixed liquors from an ecotoxicological and mycological point of view: Risks vs potential biodegradation application. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 627:835-843. [PMID: 29426208 DOI: 10.1016/j.scitotenv.2018.01.240] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Revised: 01/23/2018] [Accepted: 01/24/2018] [Indexed: 06/08/2023]
Abstract
Fungi are known to be present in the activated sludge of wastewater treatment plants (WWTP). Their study should be at the base of an overall vision of the plant effectiveness and of effluents sanitary impact. Moreover, it could be fundamental for the implementation of successful bioaugmentation strategies aimed at the removal of recalcitrant or toxic compounds. This is one of the first studies on the cultivable autochthonous mycoflora present in the mixed liquors of two WWTP treating either vegetable or chromium tannery effluents. All samples showed a risk associated with potential pathogens or toxigenic species and high ecotoxicity (Lepidium sativum and Raphidocelis subcapitata were the most sensitive organisms). Diverse fungal populations developed, depending on the origin of the samples (63% of the 102 identified taxa were sample-specific). The use of a fungistatic was determinant for the isolation and, thus, for the identification of sample-specific species with a lower growth rate. The incubation temperature also affected the mycoflora composition, even though at lower extent. A selective medium, consisting of agarised wastewater, allowed isolating fungi with a biodegradation potential. Pseudallescheria boydii/Scedosporium apiospermum species complex was ubiquitously dominant, indicating a possible role in the degradation of pollutants in both WWTP. Other species, i.e. Trichoderma spp., Trematosphaeria grisea, Geotrichum candidum, Lichtheimia corymbifera, Acremonium furcatum, Penicillium simplicissimum, Penicillium dangeardii, Fusarium solani, Scopulariopsis brevicaulis potentially could be involved in the degradation of specific pollutants of vegetable or chromium tannery wastewaters. However, several of these fungi are potential pathogens and their application, for an in situ treatment, must be carefully evaluated.
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Affiliation(s)
- Valeria Tigini
- Department of Life Sciences and Systems Biology, University of Turin, viale Mattioli 25, 10125 Turin, Italy.
| | - Federico Bevione
- Department of Life Sciences and Systems Biology, University of Turin, viale Mattioli 25, 10125 Turin, Italy
| | - Valeria Prigione
- Department of Life Sciences and Systems Biology, University of Turin, viale Mattioli 25, 10125 Turin, Italy
| | - Anna Poli
- Department of Life Sciences and Systems Biology, University of Turin, viale Mattioli 25, 10125 Turin, Italy
| | - Lucrezia Ranieri
- Department of Life Sciences and Systems Biology, University of Turin, viale Mattioli 25, 10125 Turin, Italy
| | - Francesco Spennati
- Department of Environmental and Civil Engineering, University or Florence, via Santa Marta 3, 50139 Firenze, Italy
| | - Giulio Munz
- Department of Environmental and Civil Engineering, University or Florence, via Santa Marta 3, 50139 Firenze, Italy
| | - Giovanna Cristina Varese
- Department of Life Sciences and Systems Biology, University of Turin, viale Mattioli 25, 10125 Turin, Italy
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Svobodová K, Novotný Č. Bioreactors based on immobilized fungi: bioremediation under non-sterile conditions. Appl Microbiol Biotechnol 2017; 102:39-46. [PMID: 29038974 DOI: 10.1007/s00253-017-8575-z] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Revised: 10/05/2017] [Accepted: 10/06/2017] [Indexed: 12/18/2022]
Abstract
White-rot fungi are renowned for their remarkable potential to degrade a wide range of organic pollutants. They are applicable in standard bioreactors offering both the use of the continuous mode of action and easy upscaling of the biodegradation process. The recent advance in this field consisted in the use of various fungi and different types of reactors in the treatment of real wastewaters. Most degradation studies involving white-rot fungi carried out so far used controlled, aseptic conditions. However, during bioremediation of real wastewaters, the degradation capacity of the fungi would be significantly affected by autochthonous microorganisms. Consequently, for the development of sustainable bioremediation technologies, it is important to understand the mechanisms involved in the intermicrobial interactions occurring during the bioremediation process. This review summarizes recent applications of white-rot fungi to biodegradation of recalcitrant organopollutants under non-sterile conditions describing the invading microorganism(s) and the way how they affect the stability and degradation efficiency of the fungal bioreactor cultures. In addition, studies where fungal cultures were exposed to defined microbial stress are also reported documenting the effect and mechanisms of microbial interactions. Advanced OMICs techniques, specifically the genomics and metabolomics analyses, are suggested to help in identification of the invading microorganisms and in discovery of mechanisms taking part in the interspecific interactions.
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Affiliation(s)
- Kateřina Svobodová
- Laboratory of Environmental Biotechnology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220, Prague, Czech Republic.
| | - Čeněk Novotný
- Laboratory of Environmental Biotechnology, Institute of Microbiology of the Czech Academy of Sciences, Vídeňská 1083, 14220, Prague, Czech Republic
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