Nitrogen transformation under different dissolved oxygen levels by the anoxygenic phototrophic bacterium Marichromatium gracile

Optimization and action mechanism of pollutant removal performance of unsaturated vertical flow constructed wetland (UVFCW) driven by substained-release carbon source

Constructed wetland (CW) technology has attracted much attention due to its economical and environmentally friendly features. The low dissolved oxygen (DO) and low carbon/nitrogen (C/N) ratio in the wetland influent water affect the treatment performance of CW, resulting in a decrease in the removal efficiency of ammonia nitrogen (NH4 +-N) and nitrate nitrogen (NO3 --N). In order to address this problem, this study optimized the pollutants removal performance of unsaturated vertical flow constructed wetland (UVFCW) by adding sustained-release carbon sources (corn cobs + polybutylene adipate terephthalate (PBAT)). The results showed that the sustained-release of carbon source increased the carbon source in UVFCW, thus increasing the abundance and activity of denitrifying microorganisms and enhancing the denitrification reaction, ultimately improving the removal of NO3 --N, with its removal efficiency reaching up to 95.50%. The placement method of sustained-release carbon source mainly affected the distribution of carbon source and DO in water body, thus influencing the relative abundance of microorganisms, finally affecting the removal of pollutants. Among them, the removal efficiency of total nitrogen (TN), NO3 --N, and total phosphorus (TP), and the relative abundance of denitrifying microorganisms in the CWR-Cu (uniform placement of sustained-release carbon source) were significantly higher than those in the CWR-Ca (centralized placement above) and CWR-Cb (centralized placement below) (p < 0.05). The surface C:O (carbon:oxygen) ratio of sustained-release carbon source after water treatment showed a decreasing trend, and CWR-Cu exhibited the greatest decrease in C:O ratio. In summary, CWR-Cu achieved the highest utilization of the carbon source and produced the largest number of heterotrophic microorganisms. This study reveals that CWR-Cu is a structural process for the efficient removal of nitrogen and phosphorus pollutants, and our findings provide theoretical basis and technical support for actual projects.

Evaluation of Non-Biodegradable Organic Matter and Microbial Community’s Effects on Achievement of Partial Nitrification Coupled with ANAMMOX for Treating Low-Carbon Livestock Wastewater

After the anaerobic digestion of livestock manure, high concentrations of nutrients still remain. Treatment of livestock wastewater through partial nitrification coupled with anaerobic ammonium oxidation (ANAMMOX) could be a useful technology depending on the investigation of microorganism enrichment and partial nitrification coupled with achievement of the ANAMMOX process. The results show 78.4% and 64.7% nitrite accumulation efficiency was successfully obtained in an intermittent aeration sequencing batch reactor and a continuous aeration sequencing batch reactor, respectively, at a loading rate of 0.93 kg ammonium/(m3·d). The main reason for the high nitrite accumulation efficiency was the intermittent aeration strategy which generated a 20–30 min lag reaction for nitrite oxidation and promoted the growth of the dominant ammonium oxidation bacteria (Nitrosomonas). Non-biodegradable organic matter in the effluents of partial nitrification did not have obvious influence on ANAMMOX activity at low loading rates (118 ± 13 mg COD/L and 168 ± 9 mg COD/L), and up to 87.4% average nitrite removal rate was observed. However, with the influent COD concentration increasing to 242 ± 17 mg/L, the potential inhibition of ANAMMOX activity was exerted by non-biodegradable organic matter.

Effects of Supplement of Marichromatium gracile YL28 on Water Quality and Microbial Structures in Shrimp Mariculture Ecosystems

The elevated NH₃-N and NO₂-N pollution problems in mariculture have raised concerns because they pose threats to animal health and coastal and offshore environments. Supplement of Marichromatium gracile YL28 (YL28) into polluted shrimp rearing water and sediment significantly decreased ammonia and nitrite concentrations, showing that YL28 functioned as a novel safe marine probiotic in the shrimp culture industry. The diversity of aquatic bacteria in the shrimp mariculture ecosystems was studied by sequencing the V4 region of 16S rRNA genes, with respect to additions of YL28 at the low and high concentrations. It was revealed by 16S rRNA sequencing analysis that Proteobacteria, Planctomycete and Bacteroidetes dominated the community (>80% of operational taxonomic units (OTUs)). Up to 41.6% of the predominant bacterial members were placed in the classes Gammaproteobacteria (14%), Deltaproteobacteria (14%), Planctomycetacia (8%) and Alphaproteobacteria (5.6%) while 40% of OTUs belonged to unclassified ones or others, indicating that the considerable bacterial populations were novel in our shrimp mariculture. Bacterial communities were similar between YL28 supplements and control groups (without addition of YL28) revealed by the β-diversity using PCoA, demonstrating that the additions of YL28 did not disturb the microbiota in shrimp mariculture ecosystems. Instead, the addition of YL28 increased the relative abundance of ammonia-oxidizing and denitrifying bacteria. The quantitative PCR analysis further showed that key genes including nifH and amoA involved in nitrification and nitrate or nitrite reduction significantly increased with YL28 supplementation (p < 0.05). The supplement of YL28 decreased the relative abundance of potential pathogen Vibrio. Together, our studies showed that supplement of YL28 improved the water quality by increasing the relative abundance of ammonia-oxidizing and denitrifying bacteria while the microbial community structure persisted in shrimp mariculture ecosystems.

Effects of substrate type on denitrification efficiency and microbial community structure in constructed wetlands

Three constructed wetland systems were established to treat saline sewage via high-porosity ceramsite, activated carbon, and low-porosity sand: A (ceramsite + activated carbon + sand), B (sand + activated carbon + ceramsite), and C (sand). The distribution of dissolved oxygen in these systems varied with different filling methods with the best removal efficiency of ammonium nitrogen and total nitrogen observed in system B (97.4 and 96.2%, respectively). The 16S rDNA amplicon sequencing results showed that all the systems had a high abundance of salt-tolerant denitrifiers, and the filling method significantly impacted denitrifying bacteria (e.g., Vibrio and Planctomyces) in the substrate. System B had more diverse dissolved oxygen conditions than system A and showcased aerobic nitrification-denitrification and anaerobic ammonium oxidation pathways. Therefore, the use of substrates with different porosities can improve the dissolved oxygen supply and enhance nitrogen removal efficiency in constructed wetlands.

Influences of organic nitrogen on the removal of inorganic nitrogen from complicated marine aquaculture water by Marichromatium gracile YL28

The sediment-water interface is not only an important location for substrate conversion in a mariculture system, but also a major source of eutrophication. This study aimed to clarify the characteristics of inorganic nitrogen (ammonia, nitrite and nitrate) removal by Marichromatium gracile YL28 in the presence of both organic nitrogen and inorganic nitrogen. The results showed that, in the presence of peptone or urea, seaweed oligosaccharides (SOS) effectively enhanced the ammonia removal capacity of YL28 (6.42 mmol/L) and decreased the residual rate by 54.04% or 8.17%, respectively. With increasing peptone or urea concentrations, the removal of both ammonia and nitrate was gradually inhibited, and the residual rates of ammonia and nitrate reached 22.56-34.36% and 12.03-15.64% in the peptone system and 20.65-24.03% and 12.20-13.21% in the urea system, respectively. However, in the control group the residual rates of ammonia and nitrate reached 11.97% and 5.12%, respectively. In addition, the concentrations of peptone and urea did not affect nitrite removal, and YL28 displayed better cell growth and nitrogen removal activity in the presence of bait and SOS. Overall, the ability of YL28 to remove inorganic nitrogen was enhanced in the presence of organic nitrogen.

Effects of Marichromatium gracile YL28 on the nitrogen management in the aquaculture pond water

Nitrogen pollution in aquaculture needs the efficient and cost-effective in-situ technology. This study aims to apply Marichromatium gracile YL28 to in-situ bioremediation and test its ability to maintain the nitrogen balance in aquaculture. In laboratory aquaculture system, approximately 99.96% of nitrite (1 mg/L) was removed within 7 d through denitrification coupled with assimilatory nitrate reduction. Ammonium (3.5 mg/L) of 95.6% was directly assimilated by YL28 within 7 d. Moreover, in zero exchange water from shrimp (Penaeus vannamei) aquaculture field trials (20 days), YL28 significantly reduced the ammonium accumulation (0.6 mg/L) and 99.3% of nitrite (1.25 mg/L). Toxicological studies with the Institute of Cancer Research (ICR) mice and Oryzias melastigma indicated that M. gracile YL28 can be safely applied in aquatic ecosystems. All results demonstrate that strain YL28 has high promise for future applications of removing inorganic nitrogen and maintaining the nitrogen balance from in-situ aquaculture.

Comparative genome analysis of marine purple sulfur bacterium Marichromatium gracile YL28 reveals the diverse nitrogen cycle mechanisms and habitat-specific traits

Mangrove ecosystems are characteristic of the high salinity, limited nutrients and S-richness. Marichromatium gracile YL28 (YL28) isolated from mangrove tolerates the high concentrations of nitrite and sulfur compounds and efficiently eliminates them. However, the molecular mechanisms of nitrite and sulfur compounds utilization and the habitat adaptation remain unclear in YL28. We sequenced YL28 genome and further performed the comparative genome analysis in 36 purple bacteria including purple sulfur bacteria (PSB) and purple non-sulfur bacteria (PNSB). YL28 has 6 nitrogen cycle pathways (up to 40 genes), and possibly removes nitrite by denitrification, complete assimilation nitrate reduction and fermentative nitrate reduction (DNRA). Comparative genome analysis showed that more nitrogen utilization genes were detected in PNSB than those in PSB. The partial denitrification pathway and complete assimilation nitrate reduction were reported in PSB and DNRA was reported in purple bacteria for the first time. The three sulfur metabolism genes such as oxidation of sulfide, reversed dissimilatory sulfite reduction and sox system allowed to eliminate toxic sulfur compounds in the mangrove ecosystem. Several unique stress response genes facilitate to the tolerance of the high salinity environment. The CRISPR systems and the transposon components in genomic islands (GIs) likely contribute to the genome plasticity in purple bacteria.