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Fukumori K, Kondo NI, Kohzu A, Tsuchiya K, Ito H, Kadoya T. Vertical eDNA distribution of cold-water fishes in response to environmental variables in stratified lake. Ecol Evol 2024; 14:e11091. [PMID: 38500853 PMCID: PMC10945234 DOI: 10.1002/ece3.11091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Revised: 01/22/2024] [Accepted: 02/16/2024] [Indexed: 03/20/2024] Open
Abstract
In summer, the survival zones of cold-water species are predicted to narrow by both increasing water temperatures from the surface and by expanding hypoxic zones from the lake bottom. To examine how the abundance of cold-water fishes changes along environmental gradients, we assessed the vertical environmental DNA (eDNA) distributions of three salmonid species which may have different water temperature tolerances during both stratification and turnover periods using quantitative PCR (qPCR). In addition, we examined on the vertical distribution of diverse fish fauna using an eDNA metabarcoding assay. The results suggested that the kokanee salmon (Oncorhynchus nerka) eDNA were abundant in deep, cold waters. On the other hand, rainbow trout (O. mykiss) eDNA were distributed uniformly throughout the water column, suggesting that they may have high water-temperature tolerance compared with kokanee salmon. The eDNA concentrations of masu salmon (O. masou) were below the detection limit (i.e., <10 copies μL-1) at all stations and depths and hence could not be quantified during stratification. Together with the finding that the eDNA distributions of other prey fish species were also constrained vertically in species-specific ways, our results suggest that climate change will result in substantial changes in the vertical distributions of lake fish species and thus affect their populations and interactions.
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Affiliation(s)
- Kayoko Fukumori
- Biodiversity DivisionNational Institute for Environmental Studies (NIES)IbarakiJapan
| | - Natsuko I. Kondo
- Biodiversity DivisionNational Institute for Environmental Studies (NIES)IbarakiJapan
| | - Ayato Kohzu
- Regional Environment Conservation DivisionNational Institute for Environmental Studies (NIES)IbarakiJapan
| | - Kenji Tsuchiya
- Regional Environment Conservation DivisionNational Institute for Environmental Studies (NIES)IbarakiJapan
| | - Hiroshi Ito
- Biodiversity DivisionNational Institute for Environmental Studies (NIES)IbarakiJapan
| | - Taku Kadoya
- Biodiversity DivisionNational Institute for Environmental Studies (NIES)IbarakiJapan
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Gu S, Qi T, Rohr JR, Liu X. Meta-analysis reveals less sensitivity of non-native animals than natives to extreme weather worldwide. Nat Ecol Evol 2023; 7:2004-2027. [PMID: 37932385 DOI: 10.1038/s41559-023-02235-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Accepted: 09/21/2023] [Indexed: 11/08/2023]
Abstract
Extreme weather events (EWEs; for example, heatwaves, cold spells, storms, floods and droughts) and non-native species invasions are two major threats to global biodiversity and are increasing in both frequency and consequences. Here we synthesize 443 studies and apply multilevel mixed-effects metaregression analyses to compare the responses of 187 non-native and 1,852 native animal species across terrestrial, freshwater and marine ecosystems to different types of EWE. Our results show that marine animals, regardless of whether they are non-native or native, are overall insensitive to EWEs, except for negative effects of heatwaves on native mollusks, corals and anemone. By contrast, terrestrial and freshwater non-native animals are only adversely affected by heatwaves and storms, respectively, whereas native animals negatively respond to heatwaves, cold spells and droughts in terrestrial ecosystems and are vulnerable to most EWEs except cold spells in freshwater ecosystems. On average, non-native animals displayed low abundance in terrestrial ecosystems, and decreased body condition and life history traits in freshwater ecosystems, whereas native animals displayed declines in body condition, life history traits, abundance, distribution and recovery in terrestrial ecosystems, and community structure in freshwater ecosystems. By identifying areas with high overlap between EWEs and EWE-tolerant non-native species, we also provide locations where native biodiversity might be adversely affected by their joint effects and where EWEs might facilitate the establishment and/or spread of non-native species under continuing global change.
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Affiliation(s)
- Shimin Gu
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Tianyi Qi
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Jason R Rohr
- Department of Biological Sciences, Environmental Change Initiative, University of Notre Dame, Notre Dame, IN, USA
| | - Xuan Liu
- Key Laboratory of Animal Ecology and Conservation Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.
- University of Chinese Academy of Sciences, Beijing, China.
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Suzuki T, Yano K, Okamoto S, Ueki G, Fukakusa A, Ikeda M, Inoue G, Tagashira H, Yoshida T, Tojo K. A major flood caused by a typhoon did not affect the population genetic structure of a river mayfly metapopulation. Proc Biol Sci 2023; 290:20230177. [PMID: 37072040 PMCID: PMC10113026 DOI: 10.1098/rspb.2023.0177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Accepted: 03/20/2023] [Indexed: 04/20/2023] Open
Abstract
Floods affect the population structure of organisms that inhabit streams. In recent decades, the scale of floods has become larger due to climate change. Under these circumstances, on 12 October 2019, the largest typhoon in the history of observation in Japan struck the Japanese Archipelago. This typhoon caused heavy rainfall in various places, and the Chikuma-Shinano River System (Japan's largest) suffered great damage. Eight years before the large-scale disturbance in the river system, the population structure of the mayfly Isonychia japonica was studied in detail using quantitative sampling (population numbers and biomass) and by sequencing the mtDNA cytochrome c oxidase subunit I. To understand the impact of the flood on the population and genetic structures, we repeated the same research approximately 1 year after the flood. Direct comparison of sites before and after the flood revealed no significant changes between pre- and post-flood population genetic structure. This indicates high in situ resistance and/or resilience recovery of the populations to the disturbance. We hypothesize that this high resistance/resilience to flood disturbance is a result of strong selection for such traits in the rivers of the Japanese Archipelago, which are short, steep, flow rapidly and violently, and are strongly affected by floods.
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Affiliation(s)
- Tomoya Suzuki
- Faculty of Science, Shinshu University, Asahi 3-1-1, Matsumoto, Nagano 390-8621, Japan
| | - Koki Yano
- Faculty of Science, Shinshu University, Asahi 3-1-1, Matsumoto, Nagano 390-8621, Japan
| | - Seiya Okamoto
- Faculty of Science, Shinshu University, Asahi 3-1-1, Matsumoto, Nagano 390-8621, Japan
| | - Gaku Ueki
- Faculty of Science, Shinshu University, Asahi 3-1-1, Matsumoto, Nagano 390-8621, Japan
| | - Ayako Fukakusa
- Faculty of Science, Shinshu University, Asahi 3-1-1, Matsumoto, Nagano 390-8621, Japan
| | - Maki Ikeda
- Faculty of Science, Shinshu University, Asahi 3-1-1, Matsumoto, Nagano 390-8621, Japan
| | - Gaku Inoue
- Faculty of Science, Shinshu University, Asahi 3-1-1, Matsumoto, Nagano 390-8621, Japan
| | - Haruno Tagashira
- Faculty of Science, Shinshu University, Asahi 3-1-1, Matsumoto, Nagano 390-8621, Japan
| | - Takumi Yoshida
- Faculty of Science, Shinshu University, Asahi 3-1-1, Matsumoto, Nagano 390-8621, Japan
| | - Koji Tojo
- Faculty of Science, Shinshu University, Asahi 3-1-1, Matsumoto, Nagano 390-8621, Japan
- Institute of Mountain Science, Shinshu University, Asahi 3-1-1, Matsumoto, Nagano 390-8621, Japan
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Uchida K, Okazaki A, Akasaka T, Negishi JN, Nakamura F. Disturbance legacy of a 100-year flood event: large wood accelerates plant diversity resilience on gravel-bed rivers. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 317:115467. [PMID: 35710604 DOI: 10.1016/j.jenvman.2022.115467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 05/29/2022] [Accepted: 05/29/2022] [Indexed: 06/15/2023]
Abstract
Understanding biodiversity resilience after a major disturbance is a key issue in basic and applied science. Plant diversity in gravel-bed rivers is affected by flood events, which are one of the most effective disturbance agents in the flow regime, affecting species distribution, and ecosystem dynamics. Although disturbance plays a critical role in community assembly mechanisms, how plant diversity recovers after a severe disturbance, such as a 100-year flood event remains unknown. The present study examined how the disturbance legacy of large wood in gravel-bed river ecosystems contributes to the resilience of plant diversity. The present study demonstrated that the resilience of plant species in disturbance legacy sites, namely deposited large wood sites, was higher than that in open habitat sites. Indicator species analysis revealed that perennial plants were the most important indicator species of disturbance legacy sites. These results suggest that perennial species richness contributes to the resilience of high plant diversity across the disturbance legacy sites in this region. After major flood events, land managers often remove large wood and debris jams to avoid secondary disasters, such as embankment collapse. However, we suggest that large wood should be retained on the gravel beds to aid the recovery of biodiversity and ecosystems. Furthermore, understanding the relationships between disturbance legacies and ecosystem resilience can contribute to the formulation of strategies for sustainable ecosystem management and biodiversity conservation in the future.
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Affiliation(s)
- Kei Uchida
- Institute for Sustainable Agro-ecosystem Services, The University of Tokyo, Nishi-Tokyo, Japan.
| | - Azumi Okazaki
- Division of Earth System Science, Graduate School of Environmental Science, Hokkaido University, Sapporo, Japan
| | - Takumi Akasaka
- Laboratory of Conservation Ecology, Department of Agriculture and Animal Science, Obihiro University of Agriculture and Veterinary Medicine, Obihiro, Japan
| | - Junjiro N Negishi
- Laboratory of Watershed Conservation and Management, Faculty of Environmental Earth Science, Hokkaido University, Sapporo, Japan
| | - Futoshi Nakamura
- Laboratory of Ecosystem Management, Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan
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Rahman MATMT, Negishi JN, Akasaka T, Nakamura F. Estimates of resource transfer via winged adult insects from the hyporheic zone in a gravel-bed river. Ecol Evol 2021; 11:4656-4669. [PMID: 33976838 PMCID: PMC8093731 DOI: 10.1002/ece3.7366] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 01/28/2021] [Accepted: 02/01/2021] [Indexed: 11/10/2022] Open
Abstract
Hyporheic zone (HZ) locates below the riverbed providing habitat for macroinvertebrates from where the winged adult insects (i.e., hyporheic insects, HIs) emerge and bring out aquatic resources to the riparian zone. This study estimated mean daily flux as dry biomass (BM), carbon (C), and nitrogen (N) deriving from the dominant HI species Alloperla ishikariana (Plecoptera, Chloroperlidae) for a 4th-order gravel-bed river during the early-summer to summer periods. We hypothesized that HIs were an important contributor in total aquatic resources to the riparian zone. In 2017 and 2018, we set parallelly (May to August) and perpendicularly (June to October) oriented Malaise traps to catch the lateral and longitudinal directional dispersing winged adults of A. ishikariana, and other Ephemeroptera, Plecoptera, Trichoptera, and Diptera from the river and estimated the directional fluxes of them. We further split the directional fluxes as moving away or back to the channel (for lateral) and from down- to upstream or up- to downstream (for longitudinal). Alloperla ishikariana was similar to other Plecoptera species and differed clearly from Ephemeroptera and Trichoptera in directional characteristics of resources flux, suggesting that the extent and directions of HZ-derived resource transfer depend on taxon-specific flight behaviors of HIs. Contributions of A. ishikariana to the riparian zone in total aquatic C and N transfer seasonally varied and were lower in May (5%-6%) and August (2%-4%) and the highest in July (52%-70%). These conservative estimates largely increased (9% in May) after the supplementary inclusion of Diptera (Chironomidae and Tipulidae), part of which were considered HIs. We demonstrated that HZ could seasonally contribute a significant portion of aquatic resources to the riparian zone and highlighted the potential importance of HZ in nutrient balance in the river-riparian ecosystem.
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Affiliation(s)
- Mirza A. T. M. Tanvir Rahman
- Laboratory of Watershed Conservation and Management, Graduate School of Environmental ScienceHokkaido UniversitySapporoJapan
- Department of Environmental SciencesJahangirnagar UniversityDhakaBangladesh
| | - Junjiro N. Negishi
- Laboratory of Watershed Conservation and Management, Faculty of Environmental Earth ScienceHokkaido UniversitySapporoJapan
| | - Takumi Akasaka
- Laboratory of Conservation Ecology, Department of Agriculture and Animal ScienceObihiro University of Agriculture and Veterinary MedicineObihiroJapan
| | - Futoshi Nakamura
- Laboratory of Ecosystem Management, Research Faculty of AgricultureHokkaido UniversitySapporoJapan
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Invertebrate Responses to Restoration across Benthic and Hyporheic Stream Compartments. WATER 2021. [DOI: 10.3390/w13070996] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
River restoration is a multi-billion-dollar business, yet it is unclear whether benthic community health, which is routinely monitored, can be used as a proxy for the health of the hyporheos. Applying a Before-After-Control-Impact approach to a UK case study, we compared the effects of removing an impoundment on the hyporheos with effects on the benthos. We compared invertebrate biological traits that we expected to respond to the restoration. We constructed sample-size based diversity curves and determined β-diversity between compartments and reaches. Two years post-restoration, hyporheic taxon richness was significantly lower in the restored reach compared to the control. However, three years post-restoration taxon richness was significantly higher in the impact reach. The composition of the control and impact reach hyporheos was most dissimilar at the first sampling time point post-restoration and at this time there was a universal decrease in the relative abundance of burrowing organisms respiring through gills. We did not detect a signal of restoration on benthic assemblage diversity and composition, perhaps because reach-scale restorations can be overwhelmed by catchment-scale disturbances. Thus, the hyporheos and the benthos responded differently to restoration. Given the importance of the hyporheic zone in the provision of ecosystem function and services, it is clear that it should be included in future monitoring protocols that aim to assess river restoration success.
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Morimoto J, Negishi J. Ecological resilience of ecosystems to human impacts: resilience of plants and animals. LANDSCAPE AND ECOLOGICAL ENGINEERING 2019. [DOI: 10.1007/s11355-019-00376-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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