A Validated Assay of Urease Enzyme in Different Sources Using Silver Nanoparticles

Immobilizing lead in aqueous solution and loess soil using microbially induced carbonate/phosphate precipitation (MICP/MIPP) under harsh pH environments

The bioaccumulation of heavy metals due to metallurgical and smelting activities threatens human health. Although microbial-induced carbonate/phosphate precipitation (MICP/MIPP) technology has been applied to heavy metal remediation, the relative merits of MICP and MIPP, especially under extreme pH environments, have not yet been documented. In this study, Sporosarcina pasteurii (SP)-based MICP and Bacillus megaterium (BM)-based MIPP were applied to immobilize lead (Pb) in aqueous solution and loess soil. The results showed that the BM retained a strong phosphorolysis ability when under strongly acidic conditions, while the ureolysis ability of SP approached zero. Furthermore, the bioprecipitates obtained under BM-based MIPP had a denser appearance, presumably due to the enrichment of calcite and apatite crystals. The results also showed that Pb immobilization was achieved through bacterial adsorption, the chelate function of sodium glycerophosphate (SGP), large organic matter complexation, and biomineralization through the MICP/MIPP mechanism. Under SP-based MICP, SP and large organic matter immobilized Pb2+ at rates of 17.6 % and 31.7 %, respectively, while under BM-based MIPP, BM, organic matter, and SGP immobilized Pb2+ at rates of 21.5 %, 23.4 %, and 48.5 % respectively. The MICP and MIPP mechanisms dominated Pb immobilization at rates of 78.6 % and 99.6 %, respectively.

Investigating immobilization efficiency of Pb in solution and loess soil using bio-inspired carbonate precipitation

Lead (Pb) metal accumulation in surrounding environments can cause serious threats to human health, causing liver and kidney function damage. This work explored the potential of applying the MICP technology to remediate Pb-rich water bodies and Pb-contaminated loess soil sites. In the test tube experiments, the Pb immobilization efficiency of above 85% is attained through PbCO₃ and Pb(CO₃)₂(OH)₂ precipitation. Notwithstanding that, in the loess soil column tests, the Pb immobilization efficiency decreases with the increase in depth and could be as low as approximately 40% in the deep ground. PbCO₃ and Pb(CO₃)₂(OH)₂ precipitation has not been detected as the majority of Pb²⁺ combines with -OH (hydroxyl group) when subjected to 500 mg/kg Pb²⁺. The alkaline front promotes the chemisorption of Pb²⁺ with CO₃^2- reducing the depletion of quartz mineral close to the surface. However, OH^- is in shortage in the deep ground retarding the Pb immobilization. The Pb immobilization efficiency thus decreases with the increase in depth. Quartz and albite minerals, when subjected to 16,000 mg/kg Pb²⁺, appear not to intervene in the chemisorption with Pb²⁺ where the chemisorption of Pb²⁺ with CO₃^2- plays a major role in the Pb immobilization. Compared to the nanoscale urease applied to the enzyme-induced carbonate precipitation (EICP) technology, the micrometer scale ureolytic bacteria penetrate into the deep ground with difficulty. The 'size' issue remains to be addressed in near future.

Immobilizing of lead and copper using chitosan-assisted enzyme-induced carbonate precipitation

Enzyme-induced carbonate precipitation (EICP) is considered as an environmentally friendly method for immobilizing heavy metals (HMs). The fundamental of the EICP method is to catalyze urea hydrolysis using the urease, discharging CO₃^2- and NH₄⁺. CO₃^2- helps to form carbonates that immobilize HMs afterwards. However, HMs can depress urease activity and reduce the degree of urea hydrolysis. Herein, the potential of applying the chitosan-assisted EICP method to Pb and Cu immobilization was explored. The chitosan addition elevated the degree of urea hydrolysis when subjected to the effect of Cu²⁺ toxicity where the protective effect, flocculation and adsorption, and the formation of precipitation, play parts in improving the Cu immobilization efficiency. The use of chitosan addition, however, also causes the side effect (copper-ammonia complex formation). Two calcium source additions, CaCl₂ and Ca(CH₃COO)₂, intervened in the test tube experiments not only to prevent pH from raising to values where Cu²⁺ complexes with NH₃ but also to separate the urease enzyme and Cu²⁺ from each other with the repulsion of charges. The FTIR spectra indicate that the chitosan addition adsorbs Cu²⁺ through its surface hydroxyl and carboxyl groups, while the SEM images distinguish who the mineral are nucleating with. The findings shed light on the potential of applying the chitosan-assisted EICP method to remedy lead- and copper-rich water bodies.

Bioanalytical insight into the life of microbial populations: A chemical monitoring of ureolytic bacteria growth

In this publication an alternative approach to investigations of bacterial growth is proposed. Contrary to the conventional physical methods it is based on enzyme activity detection. The procedure for real-time and on-line monitoring of microbial ureolytic activity (applied as a model experimental biosystem) in the flow analysis format is presented. The developed fully-mechanized bioanalytical flow system is composed of solenoid micropumps and microvalves actuated by Arduino microcontroller. The photometric detection based on Nessler reaction is performed using dedicated flow-through optoelectronic detector made of paired light emitting diodes. The developed bioanalytical system allows discrete assaying of microbial urease in the wide range of activity up to 5.4 U mL^-1 with detection limit below 0.44 U mL^-1, a high sensitivity in the linear range of response (up to 200 mV U^-1 mL and relatively high throughput (9 detection per hour). The proposed differential procedure of measurements (i.e. a difference between peaks register for sample with and without external addition of urea is treated as an analytical signal) allows elimination of interfering effects from substrate and products of biocatalysed reaction as well as other components of medium used for microbial growth. The developed bioanalytical system was successfully applied for the control of growth of urease-positive bacteria strains (Proteus vulgaris, Klebsiella pneumoniae and Paracoccus yeei) including examination of effects from various microbial cultivation conditions like temperature, composition of culture medium and amount of substrate required for induction of bacterial enzymatic activity. The developed bioanalytical flow system can be applied for metabolic activity-based estimation of parameters of lag and log phases of microbial growth as well as for detection of decline phase.

Paper-based analytical device with colorimetric detection for urease activity determination in soils and evaluation of potential inhibitors

Urease is an enzyme associated with the degradation of urea, an important nitrogen fertilizer in agriculture. Thus, this current report describes the use of a paper-based analytical device (UrePAD) designed to contain a microzone array for colorimetric determination of urease activity in soils in the absence/presence of potential enzyme inhibitors. The UrePAD can be used at the point-of-need (point-of-care), and it offers advantages such as low cost, simplicity in handling, low sample/reagent volumes, and no use of toxic reagents. The acid-base indicator phenol red was used to monitor the urea hydrolysis reaction catalyzed by urease in the evaluated systems. The images were digitalized in a bench scanner, and the analysis was performed using Corel Draw X8 software. The device offered a LOD of 0.10 U mL^-1 with linearity between 0.25 and 4.0 U mL^-1 and a relative standard deviation ≤ 1.38%. UrePAD was tested in four soil samples of different characteristics and with eight urease inhibitors of varied classes. The results obtained through the proposed device did not differ statistically (95% confidence interval) from those employing the classic method based on the Berthelot reaction, thus indicating that UrePAD was effective for determining urease activity and screening inhibitors, besides showing the capacity to simplify fieldwork involving the application of urea in the soil.

Complexes of N- and O-Donor Ligands as Potential Urease Inhibitors

We report five new transition-metal complexes that inhibit the urease enzyme. Barbituric acid (BTA), thiobarbituric acid (TBA), isoniazid (INZ), and nicotinamide (NCA) ligands were employed in complexation reactions. The resulting complexes were characterized using a variety of analytical techniques including infra-red and UV-vis spectroscopy, ¹H NMR spectroscopy, elemental analysis, and single-crystal X-ray diffraction analysis. We describe two mononuclear complexes with a general formula {[M(NCA)₂(H₂O)₄](BTA)₂(H₂O)}, where M = Co (1) and Zn (2), a mononuclear complex {[Ni(NCA)₂(H₂O)₄](TBA)₂(H₂O)} (3), and two polymeric chains of a general formula {[M(INZ) (H₂O)₃](BTA)₂(H₂O)₃}, where M = Co (4) and Zn (5). These complexes displayed significant urease enzyme inhibition with IC₅₀ values in the range of 3.9-19.9 μM.

A mechanized urease activity assay

Two fully mechanized flow analysis systems for urease activity assays have been developed, characterized and compared. Both of them are based on almost the same compact system of solenoid micropumps and microvalves controlled and actuated by highly effective, low-power and economic Arduino microcontroller. For photometric detection of ammonia formed in the course of enzymatic hydrolysis of urea, the Berthelot method and the Nessler reaction have been examined. For both these detection schemes very simple dedicated optoelectronic flow-through detectors made of paired light emitting diodes have been developed. In both systems single enzyme assay lasting a few minutes allows determination of urease in activity range 0.02-5.3 U mL^-1 with detection limit 0.02 U mL^-1 and in 1.3-5.3 U mL^-1 range with 0.75 U mL^-1 detection limit for Nessler reaction and Berthelot method based systems, respectively. When compared with mechanized Berthelot method, the bioanalytical system based on Nessler reaction offers higher sensitivity, lower detection/determination limits, better selectivity and lower cost of the assay. It has been demonstrated that the developed bioanalytical flow systems could be useful for urease determination in complex biological matrix like plant extracts and media for microbial cultures as well as for inhibitive determination of heavy metals at sub-ppm levels.