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Richter J, Nitzler J, Pegolotti L, Menon K, Biehler J, Wall WA, Schiavazzi DE, Marsden AL, Pfaller MR. Bayesian Windkessel calibration using optimized zero-dimensional surrogate models. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2025; 383:20240223. [PMID: 40078147 DOI: 10.1098/rsta.2024.0223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 07/29/2024] [Accepted: 08/09/2024] [Indexed: 03/14/2025]
Abstract
Bayesian boundary condition (BC) calibration approaches from clinical measurements have successfully quantified inherent uncertainties in cardiovascular fluid dynamics simulations. However, estimating the posterior distribution for all BC parameters in three-dimensional (3D) simulations has been unattainable due to infeasible computational demand. We propose an efficient method to identify Windkessel parameter posteriors: We only evaluate the 3D model once for an initial choice of BCs and use the result to create a highly accurate zero-dimensional (0D) surrogate. We then perform Sequential Monte Carlo (SMC) using the optimized 0D model to derive the high-dimensional Windkessel BC posterior distribution. Optimizing 0D models to match 3D data a priori lowered their median approximation error by nearly one order of magnitude in 72 publicly available vascular models. The optimized 0D models generalized well to a wide range of BCs. Using SMC, we evaluated the high-dimensional Windkessel parameter posterior for different measured signal-to-noise ratios in a vascular model, which we validated against a 3D posterior. The minimal computational demand of our method using a single 3D simulation, combined with the open-source nature of all software and data used in this work, will increase access and efficiency of Bayesian Windkessel calibration in cardiovascular fluid dynamics simulations.This article is part of the theme issue 'Uncertainty quantification for healthcare and biological systems (Part 1)'.
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Affiliation(s)
- Jakob Richter
- Department of Pediatrics, Stanford University, Stanford, CA, USA
- Institute for Computational Mechanics, Technical University of Munich, München, Bayern, Germany
| | - Jonas Nitzler
- Institute for Computational Mechanics, Technical University of Munich, München, Bayern, Germany
- Professorship for Data-Driven Materials Modeling, Technical University of Munich, München, Bayern, Germany
| | - Luca Pegolotti
- Department of Pediatrics, Stanford University, Stanford, CA, USA
- 2Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA
| | - Karthik Menon
- Department of Pediatrics, Stanford University, Stanford, CA, USA
- 2Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA
| | - Jonas Biehler
- Institute for Computational Mechanics, Technical University of Munich, München, Bayern, Germany
| | - Wolfgang A Wall
- Institute for Computational Mechanics, Technical University of Munich, München, Bayern, Germany
| | - Daniele E Schiavazzi
- Department of Applied and Computational Mathematics and Statistics, University of Notre Dame College of Science, Notre Dame, IN, USA
| | - Alison L Marsden
- Department of Pediatrics, Stanford University, Stanford, CA, USA
- 2Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA
| | - Martin R Pfaller
- Department of Pediatrics, Stanford University, Stanford, CA, USA
- 2Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA
- Department of Biomedical Engineering, Yale University, New Haven, CT, USA
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Zanoni A, Geraci G, Salvador M, Menon K, Marsden AL, Schiavazzi DE. Improved multifidelity Monte Carlo estimators based on normalizing flows and dimensionality reduction techniques. COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING 2024; 429:117119. [PMID: 38912105 PMCID: PMC11192502 DOI: 10.1016/j.cma.2024.117119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/25/2024]
Abstract
We study the problem of multifidelity uncertainty propagation for computationally expensive models. In particular, we consider the general setting where the high-fidelity and low-fidelity models have a dissimilar parameterization both in terms of number of random inputs and their probability distributions, which can be either known in closed form or provided through samples. We derive novel multifidelity Monte Carlo estimators which rely on a shared subspace between the high-fidelity and low-fidelity models where the parameters follow the same probability distribution, i.e., a standard Gaussian. We build the shared space employing normalizing flows to map different probability distributions into a common one, together with linear and nonlinear dimensionality reduction techniques, active subspaces and autoencoders, respectively, which capture the subspaces where the models vary the most. We then compose the existing low-fidelity model with these transformations and construct modified models with an increased correlation with the high-fidelity model, which therefore yield multifidelity estimators with reduced variance. A series of numerical experiments illustrate the properties and advantages of our approaches.
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Affiliation(s)
- Andrea Zanoni
- Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA
| | - Gianluca Geraci
- Center for Computing Research, Sandia National Laboratories, Albuquerque, NM, USA
| | - Metteo Salvador
- Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA
| | - Karthik Menon
- Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA
| | - Alison L Marsden
- Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA
- Pediatric Cardiology, Stanford University, Stanford, CA, USA
- Bioengineering, Stanford University, Stanford, CA, USA
| | - Daniele E Schiavazzi
- Department of Applied and Computational Mathematics and Statistics, University of Notre Dame, Notre Dame, IN, USA
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Goetz A, Jeken-Rico P, Pelissier U, Chau Y, Sédat J, Hachem E. AnXplore: a comprehensive fluid-structure interaction study of 101 intracranial aneurysms. Front Bioeng Biotechnol 2024; 12:1433811. [PMID: 39007055 PMCID: PMC11243300 DOI: 10.3389/fbioe.2024.1433811] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Accepted: 06/03/2024] [Indexed: 07/16/2024] Open
Abstract
Advances in computational fluid dynamics continuously extend the comprehension of aneurysm growth and rupture, intending to assist physicians in devising effective treatment strategies. While most studies have first modelled intracranial aneurysm walls as fully rigid with a focus on understanding blood flow characteristics, some researchers further introduced Fluid-Structure Interaction (FSI) and reported notable haemodynamic alterations for a few aneurysm cases when considering wall compliance. In this work, we explore further this research direction by studying 101 intracranial sidewall aneurysms, emphasizing the differences between rigid and deformable-wall simulations. The proposed dataset along with simulation parameters are shared for the sake of reproducibility. A wide range of haemodynamic patterns has been statistically analyzed with a particular focus on the impact of the wall modelling choice. Notable deviations in flow characteristics and commonly employed risk indicators are reported, particularly with near-dome blood recirculations being significantly impacted by the pulsating dynamics of the walls. This leads to substantial fluctuations in the sac-averaged oscillatory shear index, ranging from -36% to +674% of the standard rigid-wall value. Going a step further, haemodynamics obtained when simulating a flow-diverter stent modelled in conjunction with FSI are showcased for the first time, revealing a 73% increase in systolic sac-average velocity for the compliant-wall setting compared to its rigid counterpart. This last finding demonstrates the decisive impact that FSI modelling can have in predicting treatment outcomes.
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Affiliation(s)
- Aurèle Goetz
- Computing and Fluids Research Group, CEMEF, Mines Paris PSL, Sophia Antipolis, France
| | - Pablo Jeken-Rico
- Computing and Fluids Research Group, CEMEF, Mines Paris PSL, Sophia Antipolis, France
| | - Ugo Pelissier
- Computing and Fluids Research Group, CEMEF, Mines Paris PSL, Sophia Antipolis, France
| | - Yves Chau
- Department of Neuro-Interventional and Vascular Interventional, University Hospital of Nice, Nice, France
| | - Jacques Sédat
- Department of Neuro-Interventional and Vascular Interventional, University Hospital of Nice, Nice, France
| | - Elie Hachem
- Computing and Fluids Research Group, CEMEF, Mines Paris PSL, Sophia Antipolis, France
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Menon K, Khan MO, Sexton ZA, Richter J, Nguyen PK, Malik SB, Boyd J, Nieman K, Marsden AL. Personalized coronary and myocardial blood flow models incorporating CT perfusion imaging and synthetic vascular trees. NPJ IMAGING 2024; 2:9. [PMID: 38706558 PMCID: PMC11062925 DOI: 10.1038/s44303-024-00014-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 02/25/2024] [Indexed: 05/07/2024]
Abstract
Computational simulations of coronary artery blood flow, using anatomical models based on clinical imaging, are an emerging non-invasive tool for personalized treatment planning. However, current simulations contend with two related challenges - incomplete anatomies in image-based models due to the exclusion of arteries smaller than the imaging resolution, and the lack of personalized flow distributions informed by patient-specific imaging. We introduce a data-enabled, personalized and multi-scale flow simulation framework spanning large coronary arteries to myocardial microvasculature. It includes image-based coronary anatomies combined with synthetic vasculature for arteries below the imaging resolution, myocardial blood flow simulated using Darcy models, and systemic circulation represented as lumped-parameter networks. We propose an optimization-based method to personalize multiscale coronary flow simulations by assimilating clinical CT myocardial perfusion imaging and cardiac function measurements to yield patient-specific flow distributions and model parameters. Using this proof-of-concept study on a cohort of six patients, we reveal substantial differences in flow distributions and clinical diagnosis metrics between the proposed personalized framework and empirical methods based purely on anatomy; these errors cannot be predicted a priori. This suggests virtual treatment planning tools would benefit from increased personalization informed by emerging imaging methods.
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Affiliation(s)
- Karthik Menon
- Department of Pediatrics (Cardiology), Stanford School of Medicine, Stanford, CA USA
- Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA USA
| | - Muhammed Owais Khan
- Department of Electrical, Computer, and Biomedical Engineering, Toronto Metropolitan University, Toronto, ON Canada
| | | | - Jakob Richter
- Department of Pediatrics (Cardiology), Stanford School of Medicine, Stanford, CA USA
| | - Patricia K. Nguyen
- VA Palo Alto Healthcare System, Palo Alto, CA USA
- Division of Cardiovascular Medicine, Stanford School of Medicine, Stanford, CA USA
| | | | - Jack Boyd
- Department of Cardiothoracic Surgery, Stanford School of Medicine, Stanford, CA USA
| | - Koen Nieman
- Division of Cardiovascular Medicine, Stanford School of Medicine, Stanford, CA USA
- Department of Radiology, Stanford School of Medicine, Stanford, CA USA
| | - Alison L. Marsden
- Department of Pediatrics (Cardiology), Stanford School of Medicine, Stanford, CA USA
- Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA USA
- Department of Bioengineering, Stanford University, Stanford, CA USA
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Burns JC. The etiologies of Kawasaki disease. J Clin Invest 2024; 134:e176938. [PMID: 38426498 PMCID: PMC10904046 DOI: 10.1172/jci176938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2024] Open
Abstract
Kawasaki disease (KD) is a systemic vasculitis that affects young children and can result in coronary artery aneurysms. The etiology is currently unknown, but new clues from the epidemiology of KD in Japan, the country of highest incidence, are beginning to shed light on what may trigger this acute inflammatory condition. Additional clues from the global changes in KD incidence during the COVID-19 pandemic, coupled with a new birth cohort study from Japan, point to the potential role of person-to-person transmission of an infectious agent. However, the rising incidence of KD in Japan, with coherent waves across the entire country, points to an increasing intensity of exposure that cannot be explained by person-to-person spread. This Review discusses new and historical observations that guide us toward a better understanding of KD etiology and explores hypotheses and interpretations that can provide direction for future investigations. Once the etiology of KD is determined, accurate diagnostic tests will become available, and new, less expensive, and more effective targeted therapies will likely be possible. Clearly, solving the mystery of the etiologies of KD remains a priority for pediatric research.
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Menon K, Khan MO, Sexton ZA, Richter J, Nieman K, Marsden AL. Personalized coronary and myocardial blood flow models incorporating CT perfusion imaging and synthetic vascular trees. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2023:2023.08.17.23294242. [PMID: 37645850 PMCID: PMC10462196 DOI: 10.1101/2023.08.17.23294242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/31/2023]
Abstract
Computational simulations of coronary artery blood flow, using anatomical models based on clinical imaging, are an emerging non-invasive tool for personalized treatment planning. However, current simulations contend with two related challenges - incomplete anatomies in image-based models due to the exclusion of arteries smaller than the imaging resolution, and the lack of personalized flow distributions informed by patient-specific imaging. We introduce a data-enabled, personalized and multi-scale flow simulation framework spanning large coronary arteries to myocardial microvasculature. It includes image-based coronary models combined with synthetic vasculature for arteries below the imaging resolution, myocardial blood flow simulated using Darcy models, and systemic circulation represented as lumped-parameter networks. Personalized flow distributions and model parameters are informed by clinical CT myocardial perfusion imaging and cardiac function using surrogate-based optimization. We reveal substantial differences in flow distributions and clinical diagnosis metrics between the proposed personalized framework and empirical methods based on anatomy; these errors cannot be predicted a priori. This suggests virtual treatment planning tools would benefit from increased personalization informed by emerging imaging methods.
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Affiliation(s)
- Karthik Menon
- Department of Pediatrics (Cardiology), Stanford School of Medicine, Stanford, CA, USA
- Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA
| | - Muhammed Owais Khan
- Department of Electrical, Computer, and Biomedical Engineering, Toronto Metropolitan University, Toronto, Ontario, Canada
| | - Zachary A Sexton
- Department of Bioengineering, Stanford University, Stanford, CA, USA
| | - Jakob Richter
- Department of Pediatrics (Cardiology), Stanford School of Medicine, Stanford, CA, USA
| | - Koen Nieman
- Departments of Radiology and Medicine (Cardiovascular Medicine), Stanford School of Medicine, Stanford, CA, USA
| | - Alison L Marsden
- Department of Pediatrics (Cardiology), Stanford School of Medicine, Stanford, CA, USA
- Institute for Computational and Mathematical Engineering, Stanford University, Stanford, CA, USA
- Department of Bioengineering, Stanford University, Stanford, CA, USA
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