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Guseva GB, Antina EV, Berezin MB, Ksenofontov AA, Bocharov PS, Smirnova AS, Pavelyev RS, Gilfanov IR, Pestova SV, Izmest'ev ES, Rubtsova SA, Kayumov AR, Kiselev SV, Azizova ZR, Ostolopovskaya OV, Efimov SV, Klochkov VV, Khodov IA, Nikitina LE. Conjugate of meso-carboxysubstituted-BODIPY with thioterpenoid as an effective fluorescent probe: Synthesis, structure, spectral characteristics, and molecular docking. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 268:120638. [PMID: 34840052 DOI: 10.1016/j.saa.2021.120638] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 10/20/2021] [Accepted: 11/12/2021] [Indexed: 06/13/2023]
Abstract
This paper is devoted to the design of a fluorescent probe based on meso-carboxysubstituted-BODIPY with a thioterpene fragment. The functional replacement of the methoxy group in the BODIPY molecule on a thioterpene fragment was carried out in order to find out the antiplatelet and anticoagulant action mechanisms of thioterpenoids and to assess the membrane and receptor factors contributions. The molecular structure of the conjugate was confirmed via UV/vis-, NMR- and MS-spectra. It is found that the probe is a high fluorescence quantum yield (to ∼ 100%) in the blue-green region at 509-516 nm. Molecular docking of all studied molecules showed that the BODIPY with terpenoid conjugation is an excellent way to increase their affinity to platelet receptor P2Y12.
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Affiliation(s)
- Galina B Guseva
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia.
| | - Elena V Antina
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia
| | - Mikhail B Berezin
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia
| | - Alexander A Ksenofontov
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia
| | - Pavel S Bocharov
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia; Ivanovo State University of Chemistry and Technology, 7, Sheremetevskiy Avenue, 153000 Ivanovo, Russia
| | - Anastassia S Smirnova
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia; Ivanovo State University of Chemistry and Technology, 7, Sheremetevskiy Avenue, 153000 Ivanovo, Russia
| | - Roman S Pavelyev
- Kazan Federal University, 18 Kremlevskaya st., 420008 Kazan, Russia
| | - Ilmir R Gilfanov
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia
| | - Svetlana V Pestova
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", Ural Branch, Russian Academy of Sciences, ul. Pervomaiskaya 48, 167000 Syktyvkar, Russia
| | - Evgeny S Izmest'ev
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", Ural Branch, Russian Academy of Sciences, ul. Pervomaiskaya 48, 167000 Syktyvkar, Russia
| | - Svetlana A Rubtsova
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", Ural Branch, Russian Academy of Sciences, ul. Pervomaiskaya 48, 167000 Syktyvkar, Russia
| | - Airat R Kayumov
- Kazan Federal University, 18 Kremlevskaya st., 420008 Kazan, Russia
| | - Sergei V Kiselev
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia
| | - Zulfiya R Azizova
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia
| | | | - Sergey V Efimov
- Kazan Federal University, 18 Kremlevskaya st., 420008 Kazan, Russia
| | | | - Ilya A Khodov
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia
| | - Liliya E Nikitina
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia; Kazan Federal University, 18 Kremlevskaya st., 420008 Kazan, Russia
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Unraveling the Mechanism of Platelet Aggregation Suppression by Monoterpenoids. BIOENGINEERING (BASEL, SWITZERLAND) 2022; 9:bioengineering9010024. [PMID: 35049733 PMCID: PMC8773274 DOI: 10.3390/bioengineering9010024] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2021] [Revised: 12/31/2021] [Accepted: 01/06/2022] [Indexed: 11/17/2022]
Abstract
Platelet aggregation causes various diseases and therefore challenges the development of novel antiaggregatory drugs. In this study, we report the possible mechanism of platelet aggregation suppression by newly synthesized myrtenol-derived monoterpenoids carrying different heteroatoms (sulphur, oxygen, or nitrogen). Despite all tested compounds suppressed the platelet aggregation in vitro, the most significant effect was observed for the S-containing compounds. The molecular docking confirmed the putative interaction of all tested compounds with the platelet’s P2Y12 receptor suggesting that the anti-aggregation properties of monoterpenoids are implemented by blocking the P2Y12 function. The calculated binding force depended on heteroatom in monoterpenoids and significantly decreased with the exchanging of the sulphur atom with oxygen or nitrogen. On the other hand, in NMR studies on dodecyl phosphocholine (DPC) as a membrane model, only S-containing compound was found to be bound with DPC micelles surface. Meanwhile, no stable complexes between DPC micelles with either O- or N-containing compounds were observed. The binding of S-containing compound with cellular membrane reinforces the mechanical properties of the latter, thereby preventing its destabilization and subsequent clot formation on the phospholipid surface. Taken together, our data demonstrate that S-containing myrtenol-derived monoterpenoid suppresses the platelet aggregation in vitro via both membrane stabilization and blocking the P2Y12 receptor and, thus, appears as a promising agent for hemostasis control.
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Lodochnikova OA, Islamov DR, Gerasimova DP, Zakharychev DV, Saifina AF, Pestova SV, Izmest'ev ES, Rubtsova SA, Pavelyev RS, Rakhmatullin IZ, Klochkov VV, Ostolopovskaya OV, Nikitina LE, Rollin P. Isobornanyl sulfoxides and isobornanyl sulfone: Physicochemical characteristics and the features of crystal structure. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130491] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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Guseva GB, Antina EV, Berezin MB, Pavelyev RS, Kayumov AR, Ostolopovskaya OV, Gilfanov IR, Frolova LL, Kutchin AV, Akhverdiev RF, Lisovskaya SA, Trizna EY, Lodochnikova OA, Islamov DR, Efimov SV, Klochkov VV, Khodov IA, Boichuk SV, Nikitina LE. Design, Spectral Characteristics, and Possibilities for Practical Application of BODIPY FL-Labeled Monoterpenoid. ACS APPLIED BIO MATERIALS 2021; 4:6227-6235. [PMID: 35006906 DOI: 10.1021/acsabm.1c00550] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This article describes the design and biological properties of a BODIPY FL-labeled monoterpenoid BF2-meso-(4-((1″R)-6″,6″-dimethylbicyclo[3.1.1]hept-2″-ene-2″)yl-methoxycarbonylpropyl)-3,3',5,5'-tetramethyl-2,2'-dipyrromethene conjugate (BODIPYmyrt). The fluorophore was characterized using X-ray, NMR, MS, and UV/vis spectroscopy. The conjugate exhibits a high quantum yield (to ∼100%) in the region 515-518 nm. BODIPYmyrt effectively penetrates the membranes of the bacterial and fungal cells and therefore can be used to examine the features of a broad spectrum of Gram-positive and Gram-negative bacteria and pathogenic fungi as well. Moreover, BODIPYmyrt exhibits a moderate tropism to the subcellular structures in mammalian cells (e.g., mitochondria), thereby providing an attractive scaffold for fluorophores to examine these particular organelles.
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Affiliation(s)
- Galina B Guseva
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences (ISC RAS), 153045 Ivanovo, Russian Federation
| | - Elena V Antina
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences (ISC RAS), 153045 Ivanovo, Russian Federation
| | - Mikhail B Berezin
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences (ISC RAS), 153045 Ivanovo, Russian Federation
| | | | | | | | - Ilmir R Gilfanov
- Kazan State Medical University, 420012 Kazan, Russian Federation
| | - Larisa L Frolova
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", 167000 Syktyvkar, Russian Federation
| | - Alexander V Kutchin
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", 167000 Syktyvkar, Russian Federation
| | | | - Svetlana A Lisovskaya
- Kazan State Medical University, Scientific Research Institute of Epidemiology and Microbiology, 420012 Kazan, Russian Federation
| | - Elena Y Trizna
- Kazan Federal University, 420008 Kazan, Russian Federation
| | - Olga A Lodochnikova
- Kazan Federal University, 420008 Kazan, Russian Federation.,Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center of Russian Academy of Sciences, 420008 Kazan, Russian Federation
| | - Daut R Islamov
- Kazan Federal University, 420008 Kazan, Russian Federation.,Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center of Russian Academy of Sciences, 420008 Kazan, Russian Federation
| | | | | | - Ilya A Khodov
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences (ISC RAS), 153045 Ivanovo, Russian Federation.,Kazan Federal University, 420008 Kazan, Russian Federation
| | - Sergei V Boichuk
- Kazan State Medical University, 420012 Kazan, Russian Federation
| | - Liliya E Nikitina
- Kazan Federal University, 420008 Kazan, Russian Federation.,Kazan State Medical University, 420012 Kazan, Russian Federation
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Tarasov AS, Rakhmatullin IZ, Shurshalova GS, Klochkov AV, Il’yasov KA, Klochkov VV. The Affect of Gadolinium Ion on Micelles and Reverse Micelles by NMR Spectroscopy. BIONANOSCIENCE 2021. [DOI: 10.1007/s12668-020-00813-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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Phase diagrams of new lamellar liquid crystalline systems based on 2H NMR spectroscopy data. MENDELEEV COMMUNICATIONS 2021. [DOI: 10.1016/j.mencom.2021.01.044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Efimov S, Dubinin M, Kobchikova P, Zgadzay Y, Khodov I, Belosludtsev K, Klochkov V. Comparison of cyclosporin variants B–E based on their structural properties and activity in mitochondrial membranes. Biochem Biophys Res Commun 2020; 526:1054-1060. [DOI: 10.1016/j.bbrc.2020.03.184] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2020] [Accepted: 03/31/2020] [Indexed: 12/17/2022]
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Nikitina LE, Pavelyev RS, Startseva VA, Kiselev SV, Galiullina LF, Aganova OV, Timerova AF, Boichuk SV, Azizova ZR, Klochkov VV, Huster D, Khodov IA, Scheidt HA. Structural details on the interaction of biologically active sulfur-containing monoterpenoids with lipid membranes. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2019.112366] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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Nikitina LE, Kiselev SV, Startseva VA, Bodrov AV, Azizova ZR, Shipina OT, Fedyunina IV, Boichuk SV, Lodochnikova OA, Klochkov VV, Galiullina LF, Khaliullina AV. Sulfur-Containing Monoterpenoids as Potential Antithrombotic Drugs: Research in the Molecular Mechanism of Coagulation Activity Using Pinanyl Sulfoxide as an Example. Front Pharmacol 2018. [PMID: 29515444 PMCID: PMC5825891 DOI: 10.3389/fphar.2018.00116] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
In this article we present the synthesis of enantiomerically pure sulfoxide and study the influence of this compound on hemostasis. Detailed NMR studies and molecular dynamics simulations using sodium dodecyl sulfate (SDS) membrane models indicated that the bicyclic fragment of sulfoxide was embedded into the SDS micelle whereas the -SO(CH2)2OH fragment remained on the surface of the micelle and was in contact with the solvent. We also found that the pro-coagulative activity of sulfoxide was due to its ability to inhibit platelet activation and inhibited the catalytic activity of phospholipid surface which was involved in formation of coagulation clotting factor complexes.
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Affiliation(s)
- Liliya E Nikitina
- Department of General and Organic Chemistry, Kazan State Medical University, Kazan, Russia.,Medical Physics Department, Institute of Physics, Kazan Federal University, Kazan, Russia
| | - Sergei V Kiselev
- Department of General and Organic Chemistry, Kazan State Medical University, Kazan, Russia
| | - Valeriya A Startseva
- Department of General and Organic Chemistry, Kazan State Medical University, Kazan, Russia
| | - Andrei V Bodrov
- Department of General and Organic Chemistry, Kazan State Medical University, Kazan, Russia
| | - Zulfiya R Azizova
- Department of General and Organic Chemistry, Kazan State Medical University, Kazan, Russia
| | - Olga T Shipina
- Department of Chemistry and Technology of Macromolecular Compounds, Kazan National Research Technological University, Kazan, Russia
| | - Inna V Fedyunina
- Department of General and Organic Chemistry, Kazan State Medical University, Kazan, Russia
| | - Sergei V Boichuk
- Department of General and Organic Chemistry, Kazan State Medical University, Kazan, Russia
| | - Olga A Lodochnikova
- A.E. Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center, Russian Academy of Sciences, Kazan, Russia
| | - Vladimir V Klochkov
- Medical Physics Department, Institute of Physics, Kazan Federal University, Kazan, Russia
| | - Leisan F Galiullina
- Medical Physics Department, Institute of Physics, Kazan Federal University, Kazan, Russia
| | - Aliya V Khaliullina
- Department of General and Organic Chemistry, Kazan State Medical University, Kazan, Russia.,Medical Physics Department, Institute of Physics, Kazan Federal University, Kazan, Russia
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