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Guseva GB, Eremeeva YV, Antina EV, Gilfanov IR, Lisovskaya SA, Ostolopovskaya OV, Trizna EY, Kayumov AR, Nikitina LE. Effect of meso-substituents and medium properties on the photo- and pH-stability, penetration efficiency into bacterial and microscopic fungi cells of terpene-BODIPY conjugates. Spectrochim Acta A Mol Biomol Spectrosc 2024; 308:123701. [PMID: 38070313 DOI: 10.1016/j.saa.2023.123701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 11/17/2023] [Accepted: 11/26/2023] [Indexed: 01/13/2024]
Abstract
In order to expand the arsenal of tools and areas for practical use of BODIPY dyes as bifunctional fluorescent theranostics, we studied the effect of the meso-substituents nature and medium properties on photo- and pH-stability, efficiency of singlet oxygen generation, and affinity to biostructures of terpene-BODIPY conjugates. The BODIPYs fused with myrtenol or thiotherpenoid via carboxylic acid residues exhibit high stability over a wide pH range and the presence of a bulky substituent at the meso-position of BODIPY conjugates increases their photostability two-fold compared to structurally related meso-unsubstituted analogues. Furthermore, the photodegradation rate of the conjugates directly depends on their ability to generate singlet oxygen and the course probability of the corresponding red-ox reactions involving reactive oxygen species. The conjugate of BODIPY with a thiotherpenoid demonstrated high ability to penetrate the membranes of filamentous and yeast-like fungi and bind to membrane of organelles in the fungal cell. At the same time, this compound also had a high ability to penetrate into biofilms of Staphylococcus aureus and Klebsiella pneumoniae and into bacterial cells within the matrix, which makes this compound promising for staining intracellular structures of eukaryotic cells and bacteria embedded into biofilms.
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Affiliation(s)
- Galina B Guseva
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 153045 Ivanovo, Russia.
| | - Yuliya V Eremeeva
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 153045 Ivanovo, Russia.
| | - Elena V Antina
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 153045 Ivanovo, Russia.
| | - Ilmir R Gilfanov
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia.
| | - Svetlana A Lisovskaya
- Kazan State Medical University, Faculty of Medicine and Biology, 420012 Kazan, Russia; Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia; Scientific Research Institute of Epidemiology and Microbiology, 420015 Kazan, Russia.
| | - Olga V Ostolopovskaya
- Kazan State Medical University, Faculty of Medicine and Biology, 420012 Kazan, Russia; Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia.
| | - Elena Y Trizna
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia.
| | - Airat R Kayumov
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia.
| | - Liliya E Nikitina
- Kazan State Medical University, Faculty of Medicine and Biology, 420012 Kazan, Russia; Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia.
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Nikitina LE, Bocharov PS, Ksenofontov AA, Antina EV, Gilfanov IR, Pavelyev RS, Ostolopovskaya OV, Fedyunina IV, Azizova ZR, Pestova SV, Izmest’ev ES, Rubtsova SA, Boichuk SV, Galembikova AR, Smolyarchuk EA, Mustafin IG, Kayumov AR, Samorodov AV. Unraveling the Mechanism of Platelet Aggregation Suppression by Thioterpenoids: Molecular Docking and In Vivo Antiaggregant Activity. Biomimetics (Basel) 2023; 8:570. [PMID: 38132509 PMCID: PMC10742178 DOI: 10.3390/biomimetics8080570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 11/14/2023] [Accepted: 11/23/2023] [Indexed: 12/23/2023] Open
Abstract
Natural monoterpenes and their derivatives are widely considered the effective ingredients for the design and production of novel biologically active compounds. In this study, by using the molecular docking technique, we examined the effects of two series of "sulfide-sulfoxide-sulfone" thioterpenoids containing different (e.g., bornane and pinane) monoterpene skeletons on the platelet's aggregation. Our data revealed that all the synthesized compounds exhibit inhibitory activities on platelet aggregation. For example, compound 1 effectively inhibited platelet activation and demonstrated direct binding with CD61 integrin, a well-known platelet GPIIb-IIIa receptor on platelets. We further examined the antiaggregant activity of the most active compound, 1, in vivo and compared its activity with that of acetylsalicylic acid and an oral GPIIb-IIIa blocker, orbofiban. We found that compound 1 demonstrates antiaggregant activity in rats when administered per os and its activity was comparable with that of acetylsalicylic acid and orbofiban. Moreover, similarly, tirofiban, a well-known GPIIb-IIIa blocker, compound 1, effectively decreased the expression of P-selectin to the values similar to those of the intact platelets. Collectively, here, we show, for the first time, the potent antiaggregant activity of compound 1 both in vitro and in vivo due to its ability to bind with the GPIIb-IIIa receptor on platelets.
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Affiliation(s)
- Liliya E. Nikitina
- General and Organic Chemistry Department, Kazan State Medical University, 420012 Kazan, Russia; (O.V.O.); (I.V.F.); (Z.R.A.)
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia; (I.R.G.); (R.S.P.); (S.V.B.)
| | - Pavel S. Bocharov
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 153045 Ivanovo, Russia; (P.S.B.); (A.A.K.); (E.V.A.)
| | - Alexander A. Ksenofontov
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 153045 Ivanovo, Russia; (P.S.B.); (A.A.K.); (E.V.A.)
- Department of Inorganic Chemistry, Ivanovo State University of Chemistry and Technology, 153045 Ivanovo, Russia
| | - Elena V. Antina
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 153045 Ivanovo, Russia; (P.S.B.); (A.A.K.); (E.V.A.)
| | - Ilmir R. Gilfanov
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia; (I.R.G.); (R.S.P.); (S.V.B.)
- Varnishes and Paints Coatings Department, Kazan National Research Technological University, 420015 Kazan, Russia
| | - Roman S. Pavelyev
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia; (I.R.G.); (R.S.P.); (S.V.B.)
| | - Olga V. Ostolopovskaya
- General and Organic Chemistry Department, Kazan State Medical University, 420012 Kazan, Russia; (O.V.O.); (I.V.F.); (Z.R.A.)
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia; (I.R.G.); (R.S.P.); (S.V.B.)
| | - Inna V. Fedyunina
- General and Organic Chemistry Department, Kazan State Medical University, 420012 Kazan, Russia; (O.V.O.); (I.V.F.); (Z.R.A.)
| | - Zulfiya R. Azizova
- General and Organic Chemistry Department, Kazan State Medical University, 420012 Kazan, Russia; (O.V.O.); (I.V.F.); (Z.R.A.)
| | - Svetlana V. Pestova
- Medical Chemistry Laboratory, Institute of Chemistry, Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 167000 Syktyvkar, Russia; (S.V.P.); (E.S.I.); (S.A.R.)
| | - Evgeniy S. Izmest’ev
- Medical Chemistry Laboratory, Institute of Chemistry, Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 167000 Syktyvkar, Russia; (S.V.P.); (E.S.I.); (S.A.R.)
| | - Svetlana A. Rubtsova
- Medical Chemistry Laboratory, Institute of Chemistry, Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 167000 Syktyvkar, Russia; (S.V.P.); (E.S.I.); (S.A.R.)
| | - Sergei V. Boichuk
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia; (I.R.G.); (R.S.P.); (S.V.B.)
- Department of Pathology, Kazan State Medical University, 420012 Kazan, Russia;
- Department of Radiotherapy and Radiology, Russian Medical Academy of Continuous Professional Education, 125993 Moscow, Russia
| | | | - Elena A. Smolyarchuk
- Department of Pharmacology, Sechenov First Moscow State Medical University (Sechenov University), 125993 Moscow, Russia;
| | - Ilshat G. Mustafin
- Biochemistry Department, Kazan State Medical University, 420012 Kazan, Russia;
| | - Airat R. Kayumov
- Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia; (I.R.G.); (R.S.P.); (S.V.B.)
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Baidamshina DR, Trizna EY, Goncharova SS, Sorokin AV, Lavlinskaya MS, Melnik AP, Gafarova LF, Kharitonova MA, Ostolopovskaya OV, Artyukhov VG, Sokolova EA, Holyavka MG, Bogachev MI, Kayumov AR, Zelenikhin PV. The Effect of Ficin Immobilized on Carboxymethyl Chitosan on Biofilms of Oral Pathogens. Int J Mol Sci 2023; 24:16090. [PMID: 38003281 PMCID: PMC10671066 DOI: 10.3390/ijms242216090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Revised: 10/31/2023] [Accepted: 11/07/2023] [Indexed: 11/26/2023] Open
Abstract
In the last decade, Ficin, a proteolytic enzyme extracted from the latex sap of the wild fig tree, has been widely investigated as a promising tool for the treatment of microbial biofilms, wound healing, and oral care. Here we report the antibiofilm properties of the enzyme immobilized on soluble carboxymethyl chitosan (CMCh) and CMCh itself. Ficin was immobilized on CMCh with molecular weights of either 200, 350 or 600 kDa. Among them, the carrier with a molecular weight of 200 kDa bound the maximum amount of enzyme, binding up to 49% of the total protein compared to 19-32% of the total protein bound to other CMChs. Treatment with pure CMCh led to the destruction of biofilms formed by Streptococcus salivarius, Streptococcus gordonii, Streptococcus mutans, and Candida albicans, while no apparent effect on Staphylococcus aureus was observed. A soluble Ficin was less efficient in the destruction of the biofilms formed by Streptococcus sobrinus and S. gordonii. By contrast, treatment with CMCh200-immobilized Ficin led to a significant reduction of the biofilms of the primary colonizers S. gordonii and S. mutans. In model biofilms obtained by the inoculation of swabs from teeth of healthy volunteers, the destruction of the biofilm by both soluble and immobilized Ficin was observed, although the degree of the destruction varied between artificial plaque samples. Nevertheless, combined treatment of oral Streptococci biofilm by enzyme and chlorhexidine for 3 h led to a significant decrease in the viability of biofilm-embedded cells, compared to solely chlorhexidine application. This suggests that the use of either soluble or immobilized Ficin would allow decreasing the amount and/or concentration of the antiseptics required for oral care or improving the efficiency of oral cavity sanitization.
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Affiliation(s)
- Diana R. Baidamshina
- Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 420008 Kazan, Russia; (D.R.B.); (E.Y.T.); (A.P.M.); (L.F.G.); (M.A.K.); (O.V.O.); (E.A.S.); (A.R.K.)
| | - Elena Yu. Trizna
- Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 420008 Kazan, Russia; (D.R.B.); (E.Y.T.); (A.P.M.); (L.F.G.); (M.A.K.); (O.V.O.); (E.A.S.); (A.R.K.)
| | - Svetlana S. Goncharova
- Department of Biophysics and Biotechnology, Voronezh State University, 394018 Voronezh, Russia; (S.S.G.); (A.V.S.); (M.S.L.); (V.G.A.); (M.G.H.)
| | - Andrey V. Sorokin
- Department of Biophysics and Biotechnology, Voronezh State University, 394018 Voronezh, Russia; (S.S.G.); (A.V.S.); (M.S.L.); (V.G.A.); (M.G.H.)
- Laboratory of Bioresource Potential of Coastal Area, Institute for Advanced Studies, Sevastopol State University, 299053 Sevastopol, Russia
| | - Maria S. Lavlinskaya
- Department of Biophysics and Biotechnology, Voronezh State University, 394018 Voronezh, Russia; (S.S.G.); (A.V.S.); (M.S.L.); (V.G.A.); (M.G.H.)
- Laboratory of Bioresource Potential of Coastal Area, Institute for Advanced Studies, Sevastopol State University, 299053 Sevastopol, Russia
| | - Anastasia P. Melnik
- Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 420008 Kazan, Russia; (D.R.B.); (E.Y.T.); (A.P.M.); (L.F.G.); (M.A.K.); (O.V.O.); (E.A.S.); (A.R.K.)
| | - Leysan F. Gafarova
- Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 420008 Kazan, Russia; (D.R.B.); (E.Y.T.); (A.P.M.); (L.F.G.); (M.A.K.); (O.V.O.); (E.A.S.); (A.R.K.)
| | - Maya A. Kharitonova
- Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 420008 Kazan, Russia; (D.R.B.); (E.Y.T.); (A.P.M.); (L.F.G.); (M.A.K.); (O.V.O.); (E.A.S.); (A.R.K.)
| | - Olga V. Ostolopovskaya
- Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 420008 Kazan, Russia; (D.R.B.); (E.Y.T.); (A.P.M.); (L.F.G.); (M.A.K.); (O.V.O.); (E.A.S.); (A.R.K.)
| | - Valeriy G. Artyukhov
- Department of Biophysics and Biotechnology, Voronezh State University, 394018 Voronezh, Russia; (S.S.G.); (A.V.S.); (M.S.L.); (V.G.A.); (M.G.H.)
| | - Evgenia A. Sokolova
- Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 420008 Kazan, Russia; (D.R.B.); (E.Y.T.); (A.P.M.); (L.F.G.); (M.A.K.); (O.V.O.); (E.A.S.); (A.R.K.)
| | - Marina G. Holyavka
- Department of Biophysics and Biotechnology, Voronezh State University, 394018 Voronezh, Russia; (S.S.G.); (A.V.S.); (M.S.L.); (V.G.A.); (M.G.H.)
- Laboratory of Bioresource Potential of Coastal Area, Institute for Advanced Studies, Sevastopol State University, 299053 Sevastopol, Russia
| | - Mikhail I. Bogachev
- Biomedical Engineering Research Centre, St. Petersburg Electrotechnical University, 197022 St. Petersburg, Russia;
| | - Airat R. Kayumov
- Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 420008 Kazan, Russia; (D.R.B.); (E.Y.T.); (A.P.M.); (L.F.G.); (M.A.K.); (O.V.O.); (E.A.S.); (A.R.K.)
- Interdepartment Research Laboratory, Kazan State Academy of Veterinary Medicine Named after N. E. Bauman, 420029 Kazan, Russia
| | - Pavel V. Zelenikhin
- Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, 420008 Kazan, Russia; (D.R.B.); (E.Y.T.); (A.P.M.); (L.F.G.); (M.A.K.); (O.V.O.); (E.A.S.); (A.R.K.)
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Nikitina LE, Lisovskaya S A, Gilfanov IR, Pavelyev R S, Ostolopovskaya OV, Fedyunina IV, Kiselev SV, Azizova ZR, Pestova SV, Izmest’ev ES, Rubtsova SA, Akhverdiev RF, Gerasimov AV, Sarbazyan EA, Shipina OT, Boichuk SV, Izmailov AG. Thioterpenoids of the Bornane Series with Potent Activity Against Opportunistic Micromycetes. BioNanoSci 2023. [DOI: 10.1007/s12668-023-01069-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
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Ksenofontov AA, Bocharov PS, Antina EV, Shevchenko OG, Samorodov AV, Gilfanov IR, Pavelyev RS, Ostolopovskaya OV, Startseva VA, Fedyunina IV, Azizova ZR, Gaysin SI, Pestova SV, Izmest’ev ES, Rubtsova SA, Khelkhal MA, Nikitina LE. Thioterpenoids as Potential Antithrombotic Drugs: Molecular Docking, Antiaggregant, Anticoagulant and Antioxidant Activities. Biomolecules 2022; 12:1599. [PMID: 36358949 PMCID: PMC9687754 DOI: 10.3390/biom12111599] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2022] [Revised: 10/27/2022] [Accepted: 10/28/2022] [Indexed: 01/09/2024] Open
Abstract
Natural monoterpenes and their derivatives are widely considered as effective ingredients for the design and production of new biologically active compounds with high antioxidant, antimicrobial and anti-protozoa properties. In this study, we synthesized two series of thiotherpenoids "sulfide-sulfoxide-sulfone", with different bicyclic monoterpene skeleton (bornane and pinane) structures. The effect of the obtained compounds on platelet aggregation was investigated by using the molecular docking technique. The obtained data revealed that all the synthesized compounds may act as potential inhibitors of platelet aggregation. Moreover, the studied sulfides have shown high antioxidant activity as revealed by lipid peroxidation (LPO) process inhibition in a non-cellular substrate containing animal lipids. The sulfides were able to inhibit erythrocyte oxidative hemolysis, to reduce the accumulation of secondary LPO products in cells and to prevent the oxidation of native oxyhemoglobin. Additionally, the corresponding sulfones and sulfoxides exhibited insignificant antioxidant activity. However, the sulfides were found to exhibit significant antiaggregant and anticoagulant effects. These findings suggest as well that the sulfides could serve as a leader compound for future research and possible practical applications.
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Affiliation(s)
- Alexander A. Ksenofontov
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia
- Biologically Active Terpenoids Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia
| | - Pavel S. Bocharov
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia
| | - Elena V. Antina
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia
| | - Oksana G. Shevchenko
- Center of Collective Usage «Molecular Biology», Institute of Biology, Komi Science Centre, Ural Branch of Russian Academy of Sciences, 28 Kommunisticheskaya Street, 167982 Syktyvkar, Russia
| | - Aleksandr V. Samorodov
- Biologically Active Terpenoids Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia
- Department of Pharmacology, Bashkir State Medical University, 3 Lenina str., 450008 Ufa, Russia
| | - Ilmir R. Gilfanov
- Biologically Active Terpenoids Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia
- Varnishes and Paints Department, Kazan National Research Technological University, 68 K. Marksa Street, 420015 Kazan, Russia
| | - Roman S. Pavelyev
- Biologically Active Terpenoids Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia
| | - Olga V. Ostolopovskaya
- Biologically Active Terpenoids Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia
- General and Organic Chemistry Department, Kazan State Medical University, 49 Butlerova Street, 420012 Kazan, Russia
| | - Valeriya A. Startseva
- Biologically Active Terpenoids Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia
- General and Organic Chemistry Department, Kazan State Medical University, 49 Butlerova Street, 420012 Kazan, Russia
| | - Inna V. Fedyunina
- Biologically Active Terpenoids Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia
- General and Organic Chemistry Department, Kazan State Medical University, 49 Butlerova Street, 420012 Kazan, Russia
| | - Zulfiya R. Azizova
- Biologically Active Terpenoids Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia
| | - Salavat I. Gaysin
- General and Organic Chemistry Department, Kazan State Medical University, 49 Butlerova Street, 420012 Kazan, Russia
| | - Svetlana V. Pestova
- Medical Chemistry Laboratory, Institute of Chemistry, Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 48 Pervomaiskaya Street, 167000 Syktyvkar, Russia
| | - Evgeniy S. Izmest’ev
- Medical Chemistry Laboratory, Institute of Chemistry, Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 48 Pervomaiskaya Street, 167000 Syktyvkar, Russia
| | - Svetlana A. Rubtsova
- Medical Chemistry Laboratory, Institute of Chemistry, Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 48 Pervomaiskaya Street, 167000 Syktyvkar, Russia
| | - Mohammed A. Khelkhal
- Biologically Active Terpenoids Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia
| | - Liliya E. Nikitina
- Biologically Active Terpenoids Laboratory, Institute of Fundamental Medicine and Biology, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia
- General and Organic Chemistry Department, Kazan State Medical University, 49 Butlerova Street, 420012 Kazan, Russia
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6
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Guseva GB, Antina EV, Berezin MB, Smirnova AS, Pavelyev RS, Gilfanov IR, Shevchenko OG, Pestova SV, Izmest’ev ES, Rubtsova SA, Ostolopovskaya OV, Efimov SV, Klochkov VV, Rakhmatullin IZ, Timerova AF, Khodov IA, Lodochnikova OA, Islamov DR, Dorovatovskii PV, Nikitina LE, Boichuk SV. Design, Spectral Characteristics, Photostability, and Possibilities for Practical Application of BODIPY FL-Labeled Thioterpenoid. Bioengineering (Basel) 2022; 9:bioengineering9050210. [PMID: 35621488 PMCID: PMC9138141 DOI: 10.3390/bioengineering9050210] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2022] [Revised: 05/03/2022] [Accepted: 05/05/2022] [Indexed: 11/16/2022] Open
Abstract
This paper presents the design and a comparative analysis of the structural and solvation factors on the spectral and biological properties of the BODIPY biomarker with a thioterpene fragment. Covalent binding of the thioterpene moiety to the butanoic acid residue of meso-substituted BODIPY was carried out to find out the membranotropic effect of conjugate to erythrocytes, and to assess the possibilities of its practical application in bioimaging. The molecular structure of the conjugate was confirmed via X-ray, UV/vis-, NMR-, and MS-spectra. It was found that dye demonstrates high photostability and high fluorescence quantum yield (to ~100%) at 514–519 nm. In addition, the marker was shown to effectively penetrate the erythrocytes membrane in the absence of erythrotoxicity. The conjugation of BODIPY with thioterpenoid is an excellent way to increase affinity dyes to biostructures, including blood components.
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Affiliation(s)
- Galina B. Guseva
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia; (G.B.G.); (E.V.A.); (M.B.B.); (A.S.S.); (I.A.K.)
| | - Elena V. Antina
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia; (G.B.G.); (E.V.A.); (M.B.B.); (A.S.S.); (I.A.K.)
| | - Mikhail B. Berezin
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia; (G.B.G.); (E.V.A.); (M.B.B.); (A.S.S.); (I.A.K.)
| | - Anastassia S. Smirnova
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia; (G.B.G.); (E.V.A.); (M.B.B.); (A.S.S.); (I.A.K.)
- Faculty of Fundamental and Applied Chemistry, Ivanovo State University of Chemistry and Technology, 7, Sheremetevskiy Avenue, 153000 Ivanovo, Russia
| | - Roman S. Pavelyev
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
| | - Ilmir R. Gilfanov
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
- Varnishes and Paints Department, Kazan National Research Technological University, 68 K. Marksa Street, 420015 Kazan, Russia
| | - Oksana G. Shevchenko
- Center of Collective Usage Molecular Biology, Institute of Biology, Komi Science Centre, Ural Branch of Russian Academy of Sciences, 28 Kommunisticheskaya Street, 167982 Syktyvkar, Russia;
| | - Svetlana V. Pestova
- Medical Chemistry Laboratory, Institute of Chemistry, Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 48 Pervomaiskaya Street, 167000 Syktyvkar, Russia; (S.V.P.); (E.S.I.); (S.A.R.)
| | - Evgeny S. Izmest’ev
- Medical Chemistry Laboratory, Institute of Chemistry, Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 48 Pervomaiskaya Street, 167000 Syktyvkar, Russia; (S.V.P.); (E.S.I.); (S.A.R.)
| | - Svetlana A. Rubtsova
- Medical Chemistry Laboratory, Institute of Chemistry, Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 48 Pervomaiskaya Street, 167000 Syktyvkar, Russia; (S.V.P.); (E.S.I.); (S.A.R.)
| | - Olga V. Ostolopovskaya
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
- General and Organic Chemistry Department, Kazan State Medical University, 49 Butlerova Street, 420012 Kazan, Russia
| | - Sergey V. Efimov
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
| | - Vladimir V. Klochkov
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
| | - Ilfat Z. Rakhmatullin
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
| | - Ayzira F. Timerova
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
| | - Ilya A. Khodov
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, 1 Akademicheskaya Street, 153045 Ivanovo, Russia; (G.B.G.); (E.V.A.); (M.B.B.); (A.S.S.); (I.A.K.)
| | - Olga A. Lodochnikova
- Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center, Russian Academy of Sciences, 8 Arbuzova Street, 420029 Kazan, Russia;
| | - Daut R. Islamov
- Laboratory for Structural Analysis of Biomacromolecules, Kazan Scientific Center, Russian Academy of Sciences, 18 Kremlevskaya Street, 420008 Kazan, Russia;
| | - Pavel V. Dorovatovskii
- National Research Centre “Kurchatov Institute”, 1 Academician Kurchatov Street, 123098 Moscow, Russia;
| | - Liliya E. Nikitina
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
- General and Organic Chemistry Department, Kazan State Medical University, 49 Butlerova Street, 420012 Kazan, Russia
| | - Sergei V. Boichuk
- Biologically Active Terpenoids Laboratory, Kazan Federal University, 18 Kremlevskaya Street, 420008 Kazan, Russia; (R.S.P.); (I.R.G.); (O.V.O.); (S.V.E.); (V.V.K.); (I.Z.R.); (A.F.T.); (L.E.N.)
- General and Organic Chemistry Department, Kazan State Medical University, 49 Butlerova Street, 420012 Kazan, Russia
- Correspondence:
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Guseva GB, Antina EV, Berezin MB, Ksenofontov AA, Bocharov PS, Smirnova AS, Pavelyev RS, Gilfanov IR, Pestova SV, Izmest'ev ES, Rubtsova SA, Kayumov AR, Kiselev SV, Azizova ZR, Ostolopovskaya OV, Efimov SV, Klochkov VV, Khodov IA, Nikitina LE. Conjugate of meso-carboxysubstituted-BODIPY with thioterpenoid as an effective fluorescent probe: Synthesis, structure, spectral characteristics, and molecular docking. Spectrochim Acta A Mol Biomol Spectrosc 2022; 268:120638. [PMID: 34840052 DOI: 10.1016/j.saa.2021.120638] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 10/20/2021] [Accepted: 11/12/2021] [Indexed: 06/13/2023]
Abstract
This paper is devoted to the design of a fluorescent probe based on meso-carboxysubstituted-BODIPY with a thioterpene fragment. The functional replacement of the methoxy group in the BODIPY molecule on a thioterpene fragment was carried out in order to find out the antiplatelet and anticoagulant action mechanisms of thioterpenoids and to assess the membrane and receptor factors contributions. The molecular structure of the conjugate was confirmed via UV/vis-, NMR- and MS-spectra. It is found that the probe is a high fluorescence quantum yield (to ∼ 100%) in the blue-green region at 509-516 nm. Molecular docking of all studied molecules showed that the BODIPY with terpenoid conjugation is an excellent way to increase their affinity to platelet receptor P2Y12.
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Affiliation(s)
- Galina B Guseva
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia.
| | - Elena V Antina
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia
| | - Mikhail B Berezin
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia
| | - Alexander A Ksenofontov
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia
| | - Pavel S Bocharov
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia; Ivanovo State University of Chemistry and Technology, 7, Sheremetevskiy Avenue, 153000 Ivanovo, Russia
| | - Anastassia S Smirnova
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia; Ivanovo State University of Chemistry and Technology, 7, Sheremetevskiy Avenue, 153000 Ivanovo, Russia
| | - Roman S Pavelyev
- Kazan Federal University, 18 Kremlevskaya st., 420008 Kazan, Russia
| | - Ilmir R Gilfanov
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia
| | - Svetlana V Pestova
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", Ural Branch, Russian Academy of Sciences, ul. Pervomaiskaya 48, 167000 Syktyvkar, Russia
| | - Evgeny S Izmest'ev
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", Ural Branch, Russian Academy of Sciences, ul. Pervomaiskaya 48, 167000 Syktyvkar, Russia
| | - Svetlana A Rubtsova
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", Ural Branch, Russian Academy of Sciences, ul. Pervomaiskaya 48, 167000 Syktyvkar, Russia
| | - Airat R Kayumov
- Kazan Federal University, 18 Kremlevskaya st., 420008 Kazan, Russia
| | - Sergei V Kiselev
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia
| | - Zulfiya R Azizova
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia
| | | | - Sergey V Efimov
- Kazan Federal University, 18 Kremlevskaya st., 420008 Kazan, Russia
| | | | - Ilya A Khodov
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences, 1 Akademicheskaya st., 153045 Ivanovo, Russia
| | - Liliya E Nikitina
- Kazan State Medical University, 49 Butlerova st., 420012 Kazan, Russia; Kazan Federal University, 18 Kremlevskaya st., 420008 Kazan, Russia
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8
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Nikitina LE, Lisovskaya SA, Startseva VA, Frolova LL, Kutchin AV, Shevchenko OG, Ostolopovskaya OV, Pavelyev RS, Khelkhal MA, Gilfanov IR, Fedyunina IV, Khaliullin RR, Akhverdiev RF, Gerasimov AV, Abzaldinova EV, Izmailov AG. Biological Activity of Bicyclic Monoterpene Alcohols. BioNanoSci 2021. [DOI: 10.1007/s12668-021-00912-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Lodochnikova OA, Islamov DR, Gerasimova DP, Zakharychev DV, Saifina AF, Pestova SV, Izmest'ev ES, Rubtsova SA, Pavelyev RS, Rakhmatullin IZ, Klochkov VV, Ostolopovskaya OV, Nikitina LE, Rollin P. Isobornanyl sulfoxides and isobornanyl sulfone: Physicochemical characteristics and the features of crystal structure. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130491] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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10
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Guseva GB, Antina EV, Berezin MB, Pavelyev RS, Kayumov AR, Ostolopovskaya OV, Gilfanov IR, Frolova LL, Kutchin AV, Akhverdiev RF, Lisovskaya SA, Trizna EY, Lodochnikova OA, Islamov DR, Efimov SV, Klochkov VV, Khodov IA, Boichuk SV, Nikitina LE. Design, Spectral Characteristics, and Possibilities for Practical Application of BODIPY FL-Labeled Monoterpenoid. ACS Appl Bio Mater 2021; 4:6227-6235. [PMID: 35006906 DOI: 10.1021/acsabm.1c00550] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This article describes the design and biological properties of a BODIPY FL-labeled monoterpenoid BF2-meso-(4-((1″R)-6″,6″-dimethylbicyclo[3.1.1]hept-2″-ene-2″)yl-methoxycarbonylpropyl)-3,3',5,5'-tetramethyl-2,2'-dipyrromethene conjugate (BODIPYmyrt). The fluorophore was characterized using X-ray, NMR, MS, and UV/vis spectroscopy. The conjugate exhibits a high quantum yield (to ∼100%) in the region 515-518 nm. BODIPYmyrt effectively penetrates the membranes of the bacterial and fungal cells and therefore can be used to examine the features of a broad spectrum of Gram-positive and Gram-negative bacteria and pathogenic fungi as well. Moreover, BODIPYmyrt exhibits a moderate tropism to the subcellular structures in mammalian cells (e.g., mitochondria), thereby providing an attractive scaffold for fluorophores to examine these particular organelles.
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Affiliation(s)
- Galina B Guseva
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences (ISC RAS), 153045 Ivanovo, Russian Federation
| | - Elena V Antina
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences (ISC RAS), 153045 Ivanovo, Russian Federation
| | - Mikhail B Berezin
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences (ISC RAS), 153045 Ivanovo, Russian Federation
| | | | | | | | - Ilmir R Gilfanov
- Kazan State Medical University, 420012 Kazan, Russian Federation
| | - Larisa L Frolova
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", 167000 Syktyvkar, Russian Federation
| | - Alexander V Kutchin
- Institute of Chemistry, Federal Research Center "Komi Scientific Centre", 167000 Syktyvkar, Russian Federation
| | | | - Svetlana A Lisovskaya
- Kazan State Medical University, Scientific Research Institute of Epidemiology and Microbiology, 420012 Kazan, Russian Federation
| | - Elena Y Trizna
- Kazan Federal University, 420008 Kazan, Russian Federation
| | - Olga A Lodochnikova
- Kazan Federal University, 420008 Kazan, Russian Federation.,Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center of Russian Academy of Sciences, 420008 Kazan, Russian Federation
| | - Daut R Islamov
- Kazan Federal University, 420008 Kazan, Russian Federation.,Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center of Russian Academy of Sciences, 420008 Kazan, Russian Federation
| | | | | | - Ilya A Khodov
- G.A. Krestov Institute of Solution Chemistry of Russian Academy of Sciences (ISC RAS), 153045 Ivanovo, Russian Federation.,Kazan Federal University, 420008 Kazan, Russian Federation
| | - Sergei V Boichuk
- Kazan State Medical University, 420012 Kazan, Russian Federation
| | - Liliya E Nikitina
- Kazan Federal University, 420008 Kazan, Russian Federation.,Kazan State Medical University, 420012 Kazan, Russian Federation
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Nikitina LE, Lisovskaya SА, Startseva VA, Pavelyev RS, Gilfanov IR, Fedyunina IV, Ostolopovskaya OV, Akhverdiev RF. Development of Novel Effective Agents Against Candida albicans Biofilms. BioNanoSci 2019. [DOI: 10.1007/s12668-019-00648-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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