Response of cellular fatty acids to environmental stresses in endophytic Micrococcus spp

Identification and biodegradation characterization of high-density polyethylene using marine bacteria isolated from the coastal region of the Arabian Sea, at Gujarat, India

High-Density Polyethylene (HDPE) PE is one of the primary contributors of long-lasting and prolonged pollution in the environment. In this study, more than three hundred marine isolates collected off the Gujarat Sea coast were tested for HDPE plastic utilizing ability. Among fifty-one positive noted isolates, RS124 as a potential strain was identified as Micrococcus flavus (accession is PP858228) based on 16 S rRNA gene sequencing and total cellular fatty acid profiling. Initial bacterial adherence on the film surface was shown in a scanning electron microscopy (SEM) image as a key step to biodegradation. Moreover, atomic force microscopy (AFM) shows that the film surface became more fragile, damaged, and rougher than untreated films. Shifts and alterations in peak transmittance with emergence of two new shouldered peak in degraded HDPE observed by fourier transform infrared spectroscopy (FTIR) was associated to chemical and mechanical alteration. Thermogravimetric analysis (TGA) analysis designated larger difference in percent weight loss provisions thermal instability. In the enzymatic study, the highest activity of peroxidase and dehydrogenase was recorded on the 3rd and 4th weeks of treatment with strain, respectively, during co-incubation. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis disclosed the presence of a distinct 19 kDa size protein, uncovering its role in the colonization of bacteria on the hydrophilic HDPE surfaces. About 1.8% weight reduction in HDPE was recorded as a result after 30 days of bio-treatment with M. flavus. Hence, the entire observed results reveal that the M. flavus RS124 could be effectively applied for the degradation of HDPE. This is the first report on M. flavus that it exhibits plastic degrading characteristic ever, which may allow for green scavenging of plastic waste.

RNase R Affects the Level of Fatty Acid Biosynthesis Transcripts Leading to Changes in membrane Fluidity

Previous studies on RNase R have highlighted significant effects of this ribonuclease in several processes of Streptococcus pneumoniae biology. In this work we show that elimination of RNase R results in overexpression of most of genes encoding the components of type II fatty acid biosynthesis (FASII) cluster. We demonstrate that RNase R is implicated in the turnover of most of transcripts from this pathway, affecting the outcome of the whole FASII cluster, and ultimately leading to changes in the membrane fatty acid composition. Our results show that the membrane of the deleted strain contains higher proportion of unsaturated and long-chained fatty acids than the membrane of the wild type strain. These alterations render the RNase R mutant more prone to membrane lipid peroxidation and are likely the reason for the increased sensitivity of this strain to detergent lysis and to the action of the bacteriocin nisin. Reprogramming of membrane fluidity is an adaptative cell response crucial for bacterial survival in constantly changing environmental conditions. The data presented here is suggestive of a role for RNase R in the composition of S. pneumoniae membrane, with strong impact on pneumococci adaptation to different stress situations.

Mitigating biomass composition uncertainties in flux balance analysis using ensemble representations

The biomass equation is a critical component in genome-scale metabolic models (GEMs): it is used as the de facto objective function in flux balance analysis (FBA). This equation accounts for the quantities of all known biomass precursors that are required for cell growth based on the macromolecular and monomer compositions measured at certain conditions. However, it is often reported that the macromolecular composition of cells could change across different environmental conditions and thus the use of the same single biomass equation in FBA, under multiple conditions, is questionable. Herein, we first investigated the qualitative and quantitative variations of macromolecular compositions of three representative host organisms, Escherichia coli, Saccharomyces cerevisiae and Cricetulus griseus, across different environmental/genetic variations. While macromolecular building blocks such as RNA, protein, and lipid composition vary notably, changes in fundamental biomass monomer units such as nucleotides and amino acids are not appreciable. We also observed that flux predictions through FBA is quite sensitive to macromolecular compositions but not the monomer compositions. Based on these observations, we propose ensemble representations of biomass equation in FBA to account for the natural variation of cellular constituents. Such ensemble representations of biomass better predicted the flux through anabolic reactions as it allows for the flexibility in the biosynthetic demands of the cells. The current study clearly highlights that certain component of the biomass equation indeed vary across different conditions, and the ensemble representation of biomass equation in FBA by accounting for such natural variations could avoid inaccuracies that may arise from in silico simulations.

Membrane lipid adaptation of soil Bacteroidetes isolates to temperature and pH

3-hydroxy fatty acids (3-OH FAs) are characteristic components of the Gram-negative bacterial membrane, recently proposed as promising temperature and pH (paleo) proxies in soil. Nevertheless, to date, the relationships between the 3-OH FA distribution and temperature/pH are only based on empirical studies, with no ground truthing work at the microbial level. This work investigated the influence of growth temperature and pH on the lipid composition of three strains of soil Gram-negative bacteria belonging to the Bacteroidetes phylum. Even though non-hydroxy FAs were more abundant than 3-OH FAs in the investigated strains, our results suggest that 3-OH FAs are involved in the membrane adaptation of these bacteria to temperature. The strains shared a common adaptation mechanism to temperature, with a significant increase in the ratio of anteiso vs. iso or normal 3-OH FAs at lower temperature. In contrast with temperature, no common adaptation mechanism to pH was observed, as the variations in the FA lipid profiles differed from one strain to another. We suggest that models reconstructing environmental changes in soils should include the whole suite of 3-OH FAs present in the membrane of Gram-negative bacteria, as all of them could be influenced by temperature or pH at the microbial level.

A facile approach for surface alteration of Pseudomonas putida I3 by supplying K2SO4 into growth medium: Enhanced removal of Pb(II) from aqueous solution

A new sight of obtaining a high efficient biosorbent by supplying specific salts into bacterial growth medium was investigated in this study for Pb(II). Among a series of salts including Na₂SO₄, Na₂S₂O₃, KCl, and K₂SO₄, the highest Pb(II) removal efficiency was observed by psychrotrophilic Pseudomonas putida I3 grown in the presence of 30g/L K₂SO₄ (KSI3-30) with biosorption capacity of 62.89mg/g under cold condition (15°C), which was increased by 42.35% as compared to control (without any additive, RI3). This stimulation effect was ascribed to the increase of potassium and sulfur containing groups on KSI3-30 surface via metabolic dependent ways. The probable mechanism for Pb(II) adsorption was ion-exchange and chemical complexation. The thermal and kinetic data well fitted to Langmuir adsorption model and pseudo-second order and intraparticle diffusion kinetic model. Good recyclability and effectively dealing with real wastewater suggested KSI3-30 was a promising biosorbent for Pb-contaminated wastewater treatment.