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Dorafshan Tabatabai AS, Dehghanian E, Mansouri-Torshizi H. Exploring the Interaction Between the Newly Designed Antitumor Zn(II) Complex and CT-DNA/BSA: Spectroscopic Methods, DFT Computational Analysis, and Docking Simulation. Appl Biochem Biotechnol 2023; 195:6276-6308. [PMID: 36856984 DOI: 10.1007/s12010-023-04394-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/17/2023] [Indexed: 03/02/2023]
Abstract
A new zinc(II) complex formulated as [Zn(pipr-ac)2], where pipr-ac stands for piperidineacetate, was synthesized and structurally identified with the help of experimental and DFT methods. Frontier molecular orbital (FMO) analysis demonstrated that the new complex has higher biological activity compared to the free ligand. Molecular electrostatic potential (MEP) showed the nitrogen atoms and oxygen of carbonyl groups are the active sites of Zn(II) compound. Also, natural bond orbital (NBO) analysis confirmed the charge transfer from the ligating atoms to the metal ion and formation of four coordinated Zn(II) complex. MTT assay illustrated a noticeable cytotoxic activity of the new zinc(II) complex compared to cisplatin on K562 cell line. The CT-DNA and serum albumin (SA) binding of the Zn(II) complex were explored individually. In this regard, UV-Vis spectroscopy and florescence titration revealed the occurrences of fluorescence quenching of CT-DNA/SA by metal compound via static mechanism and creation of hydrogen bonds and van der Waals interactions between them. The binding was further confirmed by viscosity measurement and gel electrophoresis assay for CT-DNA and circular dichroism spectroscopy for SA. Moreover, molecular docking simulation demonstrated that the new compound binds mainly through hydrogen bonds to the groove of DNA and hydrogen bonds and van der Waals interactions to site I of SA.
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Affiliation(s)
| | - Effat Dehghanian
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran.
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Feizi-Dehnayebi M, Dehghanian E, Mansouri-Torshizi H. Biological activity of bis-(morpholineacetato)palladium(II) complex: Preparation, structural elucidation, cytotoxicity, DNA-/serum albumin-interaction, density functional theory, in-silico prediction and molecular modeling. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 281:121543. [PMID: 35797947 DOI: 10.1016/j.saa.2022.121543] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2022] [Revised: 06/03/2022] [Accepted: 06/18/2022] [Indexed: 06/15/2023]
Abstract
In an effort to discover a novel potential bioactive compound, a mono-nuclear Pd(II) complex with an amino acid derivative as ligand was synthesized and characterized through experimental and computational methodologies. A square-planar configuration was suggested for palladium(II) complex utilizing density functional theory. MEP map and Mulliken atomic charge were detected electrophilic and nucleophilic regions of the compound for reactions. The lipophilicity and cytotoxic activity of the complex was more effective than cisplatin. Also, OSIRIS DataWarrior revealed proper oral bioavailability and good drug-likeness for the compound. In-vitro binding behavior of the Pd(II) complex with DNA and serum albumin (BSA) were fully determined via variety of procedures including fluorescence, UV-Vis, CD, viscosity, gel electrophoresis experiments and molecular simulation. The negative signs of ΔH° and ΔS° for Pd(II) complex-CT-DNA/-BSA systems indicated the existence of hydrogen bonding/van der Waals interactions for both binding systems. Additionally, docking simulation illustrated the interaction of Pd(II) complex with the minor groove of DNA and the hydrophobic cavity of the BSA (drug binding site I).
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Affiliation(s)
| | - Effat Dehghanian
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran.
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Alisufi N, Mansouri-Torshizi H. Preparation, characterization, DNA/BSA interaction and computational binding analyses of a dinuclear, biopotency Pd+2 coordinated with 1,4-phenylenediamine and ethylenediamine as ligands. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2021. [DOI: 10.1007/s13738-020-02098-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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He C, Heidari Majd M, Shiri F, Shahraki S. Palladium and platinum complexes of folic acid as new drug delivery systems for treatment of breast cancer cells. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129806] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Saeidifar M, Sabbaghzadeh R, Nasab NA. Biophysical Investigation and Antitumor Potential of Heterocyclic Palladium-Based Agent: Cytotoxicity, Spectroscopic and Molecular Docking Approaches in Interaction with Human Serum Albumin. Polycycl Aromat Compd 2020. [DOI: 10.1080/10406638.2020.1718717] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Maryam Saeidifar
- Nanotechnology and Advanced Materials Department, Materials and Energy Research Center, Karaj, Iran
| | - Reihaneh Sabbaghzadeh
- Department of Biology, Faculty of sciences, Hakim Sabzevari University, Sabzevar, Iran
| | - Navid Ahmadi Nasab
- Faculty of Pharmacy, Hormozgan University of Medical Science, Bandar Abbas, Iran
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Sorinezami Z, Mansouri-Torshizi H, Aminzadeh M, Ghahghaei A, Jamgohari N, Heidari Majd M. Synthesis of new ultrasonic-assisted palladium oxide nanoparticles: an in vitro evaluation on cytotoxicity and DNA/BSA binding properties. J Biomol Struct Dyn 2019; 37:4238-4250. [DOI: 10.1080/07391102.2018.1546619] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
| | | | - Mohammad Aminzadeh
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran
| | - Arezou Ghahghaei
- Department of Biology, University of Sistan and Baluchestan, Zahedan, Iran
| | - Nasimeh Jamgohari
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran
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Siidra OI, Nazarchuk EV, Charkin DO, Chukanov NV, Zakharov AY, Kalmykov SN, Ikhalaynen YA, Sharikov MI. Open-framework sodium uranyl selenate and sodium uranyl sulfate with protonated morpholino-N-acetic acid. Z KRIST-CRYST MATER 2018. [DOI: 10.1515/zkri-2018-2103] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Abstract
The reaction of sodium N-morpholine acetate with selenic and sulfuric acid and uranyl nitrate results in the formation of two novel open-framework compounds, |Na(Hmfa)|[(UO2)2(SeO4)3(H2O)](H2O)2 (NaUSe) and [Na2(SO3OH)(Hmfa)]|(UO2)(SO4)2| (NaUS), respectively. Despite identical synthetic procedures, sulfate structure dramatically differs from selenate compound. Their common feature is an open-framework featuring two-dimensional system of channels occupied by protonated morpholino-N-acetic acid species. Coordination of Na atoms is different. In NaUSe, [(UO2)2 (SeO4)3(H2O)]2− layers are pillared by {Na2O8(H2O)2(Hmfa)2} complexes to form a microporous framework. In NaUS, UO7 and SO4 polyhedra of [(UO2)(SO4)2]2− chains share common oxygen atoms with Na-centered tetrameric complexes providing a three-dimensional integrity of the structure. Both of the compounds are characterized by IR spectroscopy.
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Affiliation(s)
- Oleg I. Siidra
- Department of Crystallography , St. Petersburg State University, University Emb. 7/9 , St. Petersburg 199034 , Russia
- Nanomaterials Research Center, Kola Science Center, Russian Academy of Sciences, Apatity 184200 , Murmansk Region , Russia
| | - Evgeny V. Nazarchuk
- Department of Crystallography , St. Petersburg State University, University Emb. 7/9 , St. Petersburg 199034 , Russia
| | - Dmitry O. Charkin
- Department of Chemistry , Moscow State University, Leninskie Gory 1 , Moscow 119991 , Russia
| | - Nikita V. Chukanov
- Institute of Problems of Chemical Physics , Chernogolovka, Moscow Region 142432 , Russia
| | - Alexander Yu. Zakharov
- Department of Chemistry , Moscow State University, Leninskie Gory 1 , Moscow 119991 , Russia
| | - Stepan N. Kalmykov
- Department of Chemistry , Moscow State University, Leninskie Gory 1 , Moscow 119991 , Russia
| | - Yuriy A. Ikhalaynen
- Department of Chemistry , Moscow State University, Leninskie Gory 1 , Moscow 119991 , Russia
| | - Mikhail I. Sharikov
- Department of Chemistry , Moscow State University, Leninskie Gory 1 , Moscow 119991 , Russia
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Mansouri-Torshizi H, Khosravi F, Ghahghaei A, Shahraki S, Zareian-Jahromi S. Investigation on the interaction of newly designed potential antibacterial Zn(II) complexes with CT-DNA and HSA. J Biomol Struct Dyn 2017; 36:2713-2737. [DOI: 10.1080/07391102.2017.1363086] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
| | - Fatemeh Khosravi
- Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran
| | - Arezou Ghahghaei
- Department of Biology, University of Sistan and Baluchestan, Zahedan, Iran
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Alasvand N, Saeidifar M, Saboury AA, Mozafari M. Controllable synthesis and characterisation of palladium (II) anticancer complex-loaded colloidal gelatin nanoparticles as a novel sustained-release delivery system in cancer therapy. IET Nanobiotechnol 2017; 11:591-596. [PMID: 28745294 PMCID: PMC8676265 DOI: 10.1049/iet-nbt.2016.0164] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2016] [Revised: 12/01/2016] [Accepted: 01/13/2017] [Indexed: 12/16/2022] Open
Abstract
Over the past few years, there have been several attempts to deliver anticancer drugs into the body. It has been shown that compared to other available carriers, colloidal gelatin nanoparticles (CGNPs) have distinct properties due to their exceptional physico-chemical and biological characteristics. In this study, a novel water-soluble palladium (II) anticancer complex was first synthesised, and then loaded into CGNPs. The CGNPs were synthesised through a two-step desolvation method with an average particle size of 378 nm. After confirming the stability of the drug in the nanoparticles, the drug-loaded CGNPs were tested for in vitro cytotoxicity against human breast cancer cells. The results showed that the average drug encapsulating efficiency and drug loading of CGNPs were 64 and 10 ± 2.1% (w/w), respectively. There was a slight shift to higher values of cumulative release, when the samples were tested in lower pH values. In addition, the in vitro cytotoxicity test indicated that the number of growing cells significantly decreased after 48 h in the presence of different concentrations of drug. The results also demonstrated that the released drug could bind to DNA by a static mechanism at low concentrations (0.57 µM) on the basis of hydrophobic and hydrogen binding interactions.
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Affiliation(s)
- Neda Alasvand
- Bioengineering Research Group, Nanotechnology and Advanced Materials Department, Materials and Energy Research Center (MERC), P.O. Box 14155-4777, Tehran, Iran
| | - Maryam Saeidifar
- Bioengineering Research Group, Nanotechnology and Advanced Materials Department, Materials and Energy Research Center (MERC), P.O. Box 14155-4777, Tehran, Iran
| | - Ali Akbar Saboury
- Institute of Biochemistry and Biophysics (IBB), University of Tehran, Tehran, Iran
| | - Masoud Mozafari
- Bioengineering Research Group, Nanotechnology and Advanced Materials Department, Materials and Energy Research Center (MERC), P.O. Box 14155-4777, Tehran, Iran.
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Dustkami M, Mansouri-Torshizi H. Refolding and unfolding of CT-DNA by newly designed Pd(II) complexes. Their synthesis, characterization and antitumor effects. Int J Biol Macromol 2017; 99:319-334. [DOI: 10.1016/j.ijbiomac.2017.02.063] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Revised: 02/16/2017] [Accepted: 02/17/2017] [Indexed: 11/30/2022]
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Saeidifar M, Mansouri-Torshizi H. Investigation of the interaction between human serum albumin and antitumor palladium(II) complex containing 1,10-phenanthroline and dithiocarbamate ligands. NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS 2015; 34:16-32. [PMID: 25513861 DOI: 10.1080/15257770.2014.955192] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The interaction between [Pd(But-dtc)(phen)]NO3 (where But-dtc = butyldithiocarbamate and phen = 1,10-phenanthroline) with HSA (Human Serum Albumin) was investigated by applying fluorescence, UV-Vis and circular dichroism techniques under physiological conditions. The results of fluorescence spectra indicated that the Pd(II) complex could effectively quench the fluorescence intensity of HSA molecules via static mechanism. The number of binding sites and binding constant of HSA-Pd(II) complex were calculated. Analysis of absorption titration data on the interaction between Pd(II) complex and HSA revealed the formation of HSA-Pd(II) complex with high-binding affinity. Thermodynamic parameters indicated that hydrophobic forces play a major role in this interaction. Furthermore, CD measurements were taken to explore changes in HSA secondary structure induced by the Pd(II) complex.
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Affiliation(s)
- Maryam Saeidifar
- a Department of Nanotechnology and Advanced Materials , Materials and Energy Research Center , Karaj , Iran
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