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Rabiee N, Ahmadi S, Rahimizadeh K, Chen S, Veedu RN. Metallic nanostructure-based aptasensors for robust detection of proteins. NANOSCALE ADVANCES 2024; 6:747-776. [PMID: 38298588 PMCID: PMC10825927 DOI: 10.1039/d3na00765k] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 11/29/2023] [Indexed: 02/02/2024]
Abstract
There is a significant need for fast, cost-effective, and highly sensitive protein target detection, particularly in the fields of food, environmental monitoring, and healthcare. The integration of high-affinity aptamers with metal-based nanomaterials has played a crucial role in advancing the development of innovative aptasensors tailored for the precise detection of specific proteins. Aptamers offer several advantages over commonly used molecular recognition methods, such as antibodies. Recently, a variety of metal-based aptasensors have been established. These metallic nanomaterials encompass noble metal nanoparticles, metal oxides, metal-carbon nanotubes, carbon quantum dots, graphene-conjugated metallic nanostructures, as well as their nanocomposites, metal-organic frameworks (MOFs), and MXenes. In general, these materials provide enhanced sensitivity through signal amplification and transduction mechanisms. This review primarily focuses on the advancement of aptasensors based on metallic materials for the highly sensitive detection of protein targets, including enzymes and growth factors. Additionally, it sheds light on the challenges encountered in this field and outlines future prospects. We firmly believe that this review will offer a comprehensive overview and fresh insights into metallic nanomaterials-based aptasensors and their capabilities, paving the way for the development of innovative point-of-care (POC) diagnostic devices.
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Affiliation(s)
- Navid Rabiee
- Centre for Molecular Medicine and Innovative Therapeutics, Health Futures Institute, Murdoch University Perth WA 6150 Australia
- Precision Nucleic Acid Therapeutics, Perron Institute for Neurological and Translational Science Perth WA 6009 Australia
| | - Sepideh Ahmadi
- Student Research Committee, Department of Medical Biotechnology, School of Advanced Technologies in Medicine, Shahid Beheshti University of Medical Sciences Tehran Iran
| | - Kamal Rahimizadeh
- Centre for Molecular Medicine and Innovative Therapeutics, Health Futures Institute, Murdoch University Perth WA 6150 Australia
- Precision Nucleic Acid Therapeutics, Perron Institute for Neurological and Translational Science Perth WA 6009 Australia
| | - Suxiang Chen
- Centre for Molecular Medicine and Innovative Therapeutics, Health Futures Institute, Murdoch University Perth WA 6150 Australia
- Precision Nucleic Acid Therapeutics, Perron Institute for Neurological and Translational Science Perth WA 6009 Australia
| | - Rakesh N Veedu
- Centre for Molecular Medicine and Innovative Therapeutics, Health Futures Institute, Murdoch University Perth WA 6150 Australia
- Precision Nucleic Acid Therapeutics, Perron Institute for Neurological and Translational Science Perth WA 6009 Australia
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Akpe MA, Okon GA, Louis H, Benjamin I, Akem MU, Brown OI, Adalikwu SA, Adeyinka AS. Metals (Ga, In) decorated fullerenes as nanosensors for the adsorption of 2,2-dichlorovinyldimethylphosphate agrochemical based pollutant. Sci Rep 2023; 13:10470. [PMID: 37380664 DOI: 10.1038/s41598-023-37650-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Accepted: 06/25/2023] [Indexed: 06/30/2023] Open
Abstract
Owing to the fact that the use of 2,2-dichlorovinyldimethylphosphate (DDVP) as an agrochemical has become a matter of concern due to its persistence and potential harm to the environment and human health. Detecting and addressing DDVP contamination is crucial to protect human health and mitigate ecological impacts. Hence, this study focuses on harnessing the properties of fullerene (C60) carbon materials, known for their biological activities and high importance, to develop an efficient sensor for DDVP. Additionally, the sensor's performance is enhanced by doping it with gallium (Ga) and indium (In) metals to investigate the sensing and trapping capabilities of DDVP molecules. The detection of DDVP is carefully examined using first-principles density functional theory (DFT) at the Def2svp/B3LYP-GD3(BJ) level of theory, specifically analyzing the adsorption of DDVP at the chlorine (Cl) and oxygen (O) sites. The adsorption energies at the Cl site were determined as - 57.894 kJ/mol, - 78.107 kJ/mol, and - 99.901 kJ/mol for Cl_DDVP@C60, Cl_DDVP@Ga@C60, and Cl_DDVP@In@C60 interactions, respectively. At the O site, the adsorption energies were found to be - 54.400 kJ/mol, - 114.060 kJ/mol, and - 114.056 kJ/mol for O_DDVP@C60, O_DDVP@Ga@C60, and O_DDVP@In@C60, respectively. The adsorption energy analysis highlights the chemisorption strength between the surfaces and the DDVP molecule at the Cl and O sites of adsorption, indicating that the O adsorption site exhibits higher adsorption energy, which is more favorable according to the thermodynamics analysis. Thermodynamic parameters (∆H and ∆G) obtained from this adsorption site suggest considerable stability and indicate a spontaneous reaction in the order O_DDVP@Ga@C60 > O_DDVP@In@C60 > O_DDVP@C60. These findings demonstrate that the metal-decorated surfaces adsorbed on the oxygen (O) site of the biomolecule offer high sensitivity for detecting the organophosphate molecule DDVP.
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Affiliation(s)
- Michael A Akpe
- Computational and Bio-Simulation Research Group, University of Calabar, Calabar, Nigeria
- Department of Pure and Applied Chemistry, University of Calabar, Calabar, Nigeria
| | - Gideon A Okon
- Computational and Bio-Simulation Research Group, University of Calabar, Calabar, Nigeria
- Department of Chemical Sciences, Clifford University, Owerrinta, Nigeria
| | - Hitler Louis
- Computational and Bio-Simulation Research Group, University of Calabar, Calabar, Nigeria.
- Department of Pure and Applied Chemistry, University of Calabar, Calabar, Nigeria.
| | - Innocent Benjamin
- Computational and Bio-Simulation Research Group, University of Calabar, Calabar, Nigeria.
| | - Martilda U Akem
- Computational and Bio-Simulation Research Group, University of Calabar, Calabar, Nigeria
- Department of Pure and Applied Chemistry, University of Calabar, Calabar, Nigeria
| | - Onyebuenyi I Brown
- Computational and Bio-Simulation Research Group, University of Calabar, Calabar, Nigeria
- Department of Pure and Applied Chemistry, University of Calabar, Calabar, Nigeria
| | - Stephen A Adalikwu
- Computational and Bio-Simulation Research Group, University of Calabar, Calabar, Nigeria
| | - Adedapo S Adeyinka
- Department of Chemical Sciences, Research Centre for Synthesis and Catalysis, University of Johannesburg, Johannesburg, 2006, South Africa
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Recent Progresses in Development of Biosensors for Thrombin Detection. BIOSENSORS 2022; 12:bios12090767. [PMID: 36140153 PMCID: PMC9496736 DOI: 10.3390/bios12090767] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Revised: 09/10/2022] [Accepted: 09/13/2022] [Indexed: 12/11/2022]
Abstract
Thrombin is a serine protease with an essential role in homeostasis and blood coagulation. During vascular injuries, thrombin is generated from prothrombin, a plasma protein, to polymerize fibrinogen molecules into fibrin filaments. Moreover, thrombin is a potent stimulant for platelet activation, which causes blood clots to prevent bleeding. The rapid and sensitive detection of thrombin is important in biological analysis and clinical diagnosis. Hence, various biosensors for thrombin measurement have been developed. Biosensors are devices that produce a quantifiable signal from biological interactions in proportion to the concentration of a target analyte. An aptasensor is a biosensor in which a DNA or RNA aptamer has been used as a biological recognition element and can identify target molecules with a high degree of sensitivity and affinity. Designed biosensors could provide effective methods for the highly selective and specific detection of thrombin. This review has attempted to provide an update of the various biosensors proposed in the literature, which have been designed for thrombin detection. According to their various transducers, the constructions and compositions, the performance, benefits, and restrictions of each are summarized and compared.
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Zhang Q, Liu X, Wang H, Liu Q, Liu Q, Zhang X. Photoelectrochemical thrombin biosensor based on perylene-3,4,9,10-tetracarboxylic acid and Au co-functionalized ZnO nanorods with signal-off quenching effect of Ag@Ag 2S. Analyst 2021; 146:855-863. [PMID: 33295340 DOI: 10.1039/d0an02167a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
In this work, a thrombin photoelectrochemical aptasensor was reported based on a photoanode of perylene-3,4,9,10-tetracarboxylic acid (PTCA), Au nanoparticle co-functionalized ZnO nanorods (ZnO NRs) and the "signal-off" amplification effect of Ag@Ag2S. The photocurrent response of the ZnO NRs was improved greatly due to the excellent visible-light photoelectric performance of PTCA and the surface plasmon resonance (SPR) effect of Au nanoparticles. Due to the specific recognition between thrombin and aptamers, the non-conductive complex with a steric hindrance structure blocked the diffusion path of the electron donating ascorbic acid (AA) and then the "signal-off" Ag@Ag2S quencher was captured. The quencher blocked the irradiation light toward the ZnO NRs/PTCA/Au electrode and competitively consumed the electron donor AA that could have been involved in the oxidation reaction with photogenerated holes of PTCA, resulting in the further decrease of the photocurrent. Based on the evident photocurrent response of the photoanode and the superior quenching strategies, the detection limit of thrombin is as low as 33 fM with a wide linear detection range from 0.0001 nM to 50 nM. The prepared biosensor also exhibited good specificity, reproducibility and stability, suggesting potential application in thrombin specific detection.
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Affiliation(s)
- Qiaoxia Zhang
- College of Chemical and Biological Engineering; State Key Laboratory of Mining Disaster Prevention and Control Co-founded by Shandong Province and the Ministry of Science and Technology, Shandong University of Science and Technology, Qingdao 266590, China.
| | - Xiangwei Liu
- College of Chemical and Biological Engineering; State Key Laboratory of Mining Disaster Prevention and Control Co-founded by Shandong Province and the Ministry of Science and Technology, Shandong University of Science and Technology, Qingdao 266590, China.
| | - Haoran Wang
- College of Chemical and Biological Engineering; State Key Laboratory of Mining Disaster Prevention and Control Co-founded by Shandong Province and the Ministry of Science and Technology, Shandong University of Science and Technology, Qingdao 266590, China.
| | - Qing Liu
- College of Chemical and Biological Engineering; State Key Laboratory of Mining Disaster Prevention and Control Co-founded by Shandong Province and the Ministry of Science and Technology, Shandong University of Science and Technology, Qingdao 266590, China.
| | - Qingyun Liu
- College of Chemical and Biological Engineering; State Key Laboratory of Mining Disaster Prevention and Control Co-founded by Shandong Province and the Ministry of Science and Technology, Shandong University of Science and Technology, Qingdao 266590, China.
| | - Xianxi Zhang
- Shandong Provincial Key Laboratory/Collaborative Innovation Center of Chemical Energy Storage & Novel Cell Technology; College of Chemical and Chemical Engineering, Liaocheng University, Liaocheng 252059, China
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Visible light driven photoelectrochemical thrombin aptasensor based on uniform TiO2 nanotube arrays modified with CuOx and perylene-3,4,9,10-tetracarboxylic acid. Electrochim Acta 2020. [DOI: 10.1016/j.electacta.2020.136774] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Chen Y, Wang Y, Yan P, Ouyang Q, Dong J, Qian J, Chen J, Xu L, Li H. Co 3O 4 nanoparticles/graphitic carbon nitride heterojunction for photoelectrochemical aptasensor of oxytetracycline. Anal Chim Acta 2020; 1125:299-307. [PMID: 32674777 DOI: 10.1016/j.aca.2020.05.038] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2020] [Revised: 03/25/2020] [Accepted: 05/15/2020] [Indexed: 10/24/2022]
Abstract
As a broad-spectrum tetracycline antibiotic, the overuse of oxytetracycline (OTC) causes antibiotics residues in the environment and seriously threats to human health owing to effective antibacterial properties. Thus, it is particularly important to design a photoelectrochemical (PEC) aptasensor to detect OTC with excellent performance. Herein, we developed a selective and stable PEC aptasensor of OTC on the basis of Co3O4 nanoparticles (Co3O4 NPs)/graphitic carbon nitride (g-CN) heterojunction, used as PEC active materials. The Co3O4 NPs were successfully grown on the g-CN via grinding and calcining mixture of Co3O4 precursors and bulk g-CN. The Co3O4/g-CN heterojunction with improved light utilization and promoted electrons/holes separation capability can exhibit higher PEC signal than that of g-CN. In order to implement the purpose of specific recognition, OTC-aptamer was introduced into modified electrode to construct highly selective PEC aptasensor for OTC determination, which can possess wide linear range (0.01-500 nM) with low detection limit (3.5 pM, S/N = 3). This PEC aptasensor platform with excellent selectivity and high stability can provide a practical application in the field of water monitoring.
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Affiliation(s)
- Yun Chen
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Jiangsu University, Zhenjiang, 212013, China
| | - Yuming Wang
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Jiangsu University, Zhenjiang, 212013, China
| | - Pengcheng Yan
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Jiangsu University, Zhenjiang, 212013, China
| | - Qingqing Ouyang
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Jiangsu University, Zhenjiang, 212013, China
| | - Jintao Dong
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Jiangsu University, Zhenjiang, 212013, China
| | - Junchao Qian
- Jiangsu Key Laboratory for Environment Functional Materials, Jiangsu Key Laboratory of Intelligent Building Energy Efficiency, Suzhou University of Science and Technology, Suzhou, 215009, China
| | - Jianping Chen
- Jiangsu Key Laboratory for Environment Functional Materials, Jiangsu Key Laboratory of Intelligent Building Energy Efficiency, Suzhou University of Science and Technology, Suzhou, 215009, China
| | - Li Xu
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Jiangsu University, Zhenjiang, 212013, China.
| | - Henan Li
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Jiangsu University, Zhenjiang, 212013, China.
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Negahdary M. Electrochemical aptasensors based on the gold nanostructures. Talanta 2020; 216:120999. [PMID: 32456913 DOI: 10.1016/j.talanta.2020.120999] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Revised: 03/29/2020] [Accepted: 04/01/2020] [Indexed: 02/07/2023]
Abstract
Electrochemical aptasensors as novel diagnostic tools have attracted sufficient research interest in biomedical sciences. In this review, recent leading trends about gold (Au) nanostructures based electrochemical aptasensors have been collected, reviewed, and compared. Here, the considered electrochemical aptasensors were categorized based on the analytes and diagnostic techniques. Pharmaceutical analytes and biomolecules were reviewed in a separate section consisting of a variety of antibiotics, analgesics, and other biomolecules. Various aptasensors have also measured toxins, ions, and hazardous chemicals, and the findings of them have also been reviewed. Many aptasensors have been designed to detect different disease biomarkers that will play an essential role in the future of early diagnosis of diseases. Pathogen microorganisms have been considered as the analyte in several designed electrochemical aptasensors in recent researches, and their results have been reviewed and discussed as another section. Important aspects considered in the review of the mentioned aptasensors were the type of analyte, features of the aptamer as the biorecognition element, type of Au nanostructures, diagnostic technique, diagnostic mechanism, detection range and the limit of detection (LOD). In the last section, an in-depth analysis has been provided based on the crucial features of all included aptasensors.
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Affiliation(s)
- Masoud Negahdary
- Nanomedicine and Nanobiology Research Center, Shiraz University of Medical Sciences, Shiraz, Iran.
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Abstract
Aptasensors form a class of biosensors that function on the basis of a biological recognition. An aptasensor is advantageous because it incorporates a unique biologic recognition element, i.e., an aptamer, coupled to a transducer to convert a biological interaction to readable signals that can be easily processed and reported. In such biosensors, the specificity of aptamers is comparable to and sometimes even better than that of antibodies. Using the SELEX technique, aptamers with high specificity and affinity to various targets can be isolated from large pools of different oligonucleotides. Nowadays, new modifications of the SELEX technique and, as a result, easy generation and synthesis of aptamers have led to the wide application of these materials as biological receptors in biosensors. In this regard, aptamers promise a bright future. In the present research a brief account is initially provided of the recent developments in aptasensors for various targets. Then, immobilization methods, design strategies, current limitations and future directions are discussed for aptasensors.
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Affiliation(s)
- Laleh Hosseinzadeh
- Department of Chemistry, Dehloran Branch, Islamic Azad University, Dehloran, Iran
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Dong J, Li H, Yan P, Xu L, Zhang J, Qian J, Chen J, Li H. A composite prepared from BiOBr and gold nanoparticles with electron sink and hot-electron donor properties for photoelectrochemical aptasensing of tetracycline. Mikrochim Acta 2019; 186:794. [PMID: 31734780 DOI: 10.1007/s00604-019-3954-z] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Accepted: 10/17/2019] [Indexed: 01/14/2023]
Abstract
A photoelectrochemical (PEC) aptasensor is described for detecting tetracycline (TC). A gold nanoparticles/BiOBr (AuNPs/BiOBr) composite was prepared where the AuNPs play a key function in carrier transfer which is ascribed to the wavelength-dependent dual function as an electron sink and as a hot-electron donor. Due to this dual function, the composite exhibits a wide photo-response and high electron transfer efficiency. This results in enormously enhanced PEC response. The TC-aptamer was immobilized on an ITO modified with AuNPs/BiOBr via Au-S covalent bonding. The resulting PEC aptasensor possesses a wide linear range (1-104 ng L-1) and a low detection limit (0.35 ng L-1; at S/N = 3). Graphical abstractSchematic representation of a photoelectrochemical aptasensor for tetracycline based on the use of a AuNP/BiOBr composite with electron sink and hot-electron donor properties of the gold nanoparticles.
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Affiliation(s)
- Jintao Dong
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Key Laboratory of Zhenjiang, Jiangsu University, Zhenjiang, 212013, People's Republic of China
| | - Henan Li
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Key Laboratory of Zhenjiang, Jiangsu University, Zhenjiang, 212013, People's Republic of China
| | - Pengcheng Yan
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Key Laboratory of Zhenjiang, Jiangsu University, Zhenjiang, 212013, People's Republic of China
| | - Li Xu
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Key Laboratory of Zhenjiang, Jiangsu University, Zhenjiang, 212013, People's Republic of China.
| | - Jianming Zhang
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Key Laboratory of Zhenjiang, Jiangsu University, Zhenjiang, 212013, People's Republic of China
| | - Junchao Qian
- Jiangsu Key Laboratory for Environment Functional Materials, Jiangsu Key Laboratory of Intelligent Building Energy Efficiency, Suzhou University of Science and Technology, Suzhou, 215009, People's Republic of China
| | - Jianping Chen
- Jiangsu Key Laboratory for Environment Functional Materials, Jiangsu Key Laboratory of Intelligent Building Energy Efficiency, Suzhou University of Science and Technology, Suzhou, 215009, People's Republic of China
| | - Huaming Li
- School of Chemistry and Chemical Engineering, Institute for Energy Research, Key Laboratory of Zhenjiang, Jiangsu University, Zhenjiang, 212013, People's Republic of China.
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Li M, Guo Z, Zheng X, Yang H, Feng W, Kong J. An electrochemical aptasensor based on eATRP amplification for the detection of bisphenol A. Analyst 2019; 144:5691-5699. [PMID: 31508622 DOI: 10.1039/c9an01266d] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Herein, a novel aptasensor was constructed for ultrasensitive detection of bisphenol A (BPA). In this method, an electrochemically mediated atom transfer radical polymerization (eATRP) signal amplification strategy was applied to BPA detection for the first time. The 5'-end modified sulfhydryl group and the 3'-end modified azide group hairpin DNA were immobilized on a gold electrode through an Au-S bond. The double-stranded DNA was formed by the hybridization of an aptamer and a single-stranded DNA partially paired with the hairpin DNA. In the presence of BPA, the aptamer combined with BPA and the single-stranded DNA was released to open the hairpin structure, making the azide groups at the 3' end exposed. Subsequently the initiator of eATRP was introduced into hairpin DNA through click chemistry reaction and eATRP was conducted for the polymerization of the electroactive probe ferrocene methyl methacrylate (FMMA). As a result, the ultrasensitive detection of BPA was realized, and the detection limit of this aptasensor was as low as 59 aM and a good selectivity was obtained in the presence of 100-fold structural analogs. The application of this aptasensor was evaluated by detecting BPA in pure water samples, and recoveries were in the range of 95.23-98.40%, holding promising applications in biological analysis.
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Affiliation(s)
- Manman Li
- Pharmacy College, Henan University of Chinese Medicine, Zhengzhou 450046, P. R. China.
| | - Zhuangzhuang Guo
- Pharmacy College, Henan University of Chinese Medicine, Zhengzhou 450046, P. R. China.
| | - Xiaoke Zheng
- Pharmacy College, Henan University of Chinese Medicine, Zhengzhou 450046, P. R. China.
| | - Huaixia Yang
- Pharmacy College, Henan University of Chinese Medicine, Zhengzhou 450046, P. R. China.
| | - Weisheng Feng
- Pharmacy College, Henan University of Chinese Medicine, Zhengzhou 450046, P. R. China.
| | - Jinming Kong
- School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing 210094, P. R. China.
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