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Cheng N, Nakata PA. Disruption of the Arabidopsis Acyl-Activating Enzyme 3 Impairs Seed Coat Mucilage Accumulation and Seed Germination. Int J Mol Sci 2024; 25:1149. [PMID: 38256222 PMCID: PMC10816874 DOI: 10.3390/ijms25021149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2023] [Revised: 01/10/2024] [Accepted: 01/15/2024] [Indexed: 01/24/2024] Open
Abstract
The Acyl-activating enzyme (AAE) 3 gene encodes an oxalyl-CoA synthetase that catalyzes the conversion of oxalate to oxalyl-CoA as the first step in the CoA-dependent pathway of oxalate catabolism. Although the role of this enzyme in oxalate catabolism has been established, its biological roles in plant growth and development are less understood. As a step toward gaining a better understanding of these biological roles, we report here a characterization of the Arabidopsis thaliana aae3 (Ataae3) seed mucilage phenotype. Ruthidium red (RR) staining of Ataae3 and wild type (WT) seeds suggested that the observed reduction in Ataae3 germination may be attributable, at least in part, to a decrease in seed mucilage accumulation. Quantitative RT-PCR analysis revealed that the expression of selected mucilage regulatory transcription factors, as well as of biosynthetic and extrusion genes, was significantly down-regulated in the Ataae3 seeds. Mucilage accumulation in seeds from an engineered oxalate-accumulating Arabidopsis and Atoxc mutant, blocked in the second step of the CoA-dependent pathway of oxalate catabolism, were found to be similar to WT. These findings suggest that elevated tissue oxalate concentrations and loss of the oxalate catabolism pathway downstream of AAE3 were not responsible for the reduced Ataae3 seed germination and mucilage phenotypes. Overall, our findings unveil the presence of regulatory interplay between AAE3 and transcriptional control of mucilage gene expression.
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Affiliation(s)
| | - Paul A. Nakata
- USDA/ARS Children’s Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030-2600, USA;
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Li P, Liu C, Luo Y, Shi H, Li Q, PinChu C, Li X, Yang J, Fan W. Oxalate in Plants: Metabolism, Function, Regulation, and Application. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2022; 70:16037-16049. [PMID: 36511327 DOI: 10.1021/acs.jafc.2c04787] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Characterized by strong acidity, chelating ability, and reducing ability, oxalic acid, a low molecular weight dicarboxylic organic acid, plays important roles in the regulation of plant growth and development, the response to both biotic and abiotic stresses such as plant defense and heavy metals detoxification, and food quality. The metabolism of oxalic acid has been well-studied in microorganisms, fungi, and animals but remains less understood in plants. However, excessive accumulation of oxalic acid is detrimental to plants. Therefore, the level of oxalic acid has to be precisely controlled in plant tissues. In this review, we summarize the metabolism, function, and regulation of oxalic acid in plants, and we discuss solutions such as agricultural practices and plant biotechnology to manipulate oxalic acid metabolism to regulate plant responses to both external stimuli and internal developmental cues.
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Affiliation(s)
- Pengfei Li
- State Key Laboratory of Plant Physiology and Biochemistry, Institute of Plant Biology, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
| | - Chunlan Liu
- College of Resources and Environment, Yunnan Agricultural University, Kunming, 650201, China
| | - Yu Luo
- College of Food Science and Technology, Yunnan Agricultural University, Kunming, 650201, China
| | - Huineng Shi
- College of Resources and Environment, Yunnan Agricultural University, Kunming, 650201, China
| | - Qi Li
- College of Resources and Environment, Yunnan Agricultural University, Kunming, 650201, China
| | - Cier PinChu
- College of Resources and Environment, Yunnan Agricultural University, Kunming, 650201, China
| | - Xuejiao Li
- College of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China
| | - Jianli Yang
- State Key Laboratory of Plant Physiology and Biochemistry, Institute of Plant Biology, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
| | - Wei Fan
- College of Landscape and Horticulture, Yunnan Agricultural University, Kunming 650201, China
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Liu J, Bi B, Tian G, Li Z, Wang W, Ma F, Shi H, Liu W. Crystal idioblasts are involved in the anther dehiscence of Nicotiana tabacum. PHYSIOLOGIA PLANTARUM 2022; 174:e13753. [PMID: 36004735 DOI: 10.1111/ppl.13753] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 07/08/2022] [Accepted: 07/28/2022] [Indexed: 06/15/2023]
Abstract
In Nicotiana tabacum, the degeneration of connective tissue and stomium tissue (the stomium and circular cell cluster [CCC]) is essential for anther dehiscence. Both connective cells and CCC cells are crystal idioblasts, and these cells will undergo degeneration after accumulating calcium oxalate (CaOx) crystals. However, detailed data concerning this process are minimal. Therefore, this study used cellular biological and physiological methods to illustrate this relationship. Results demonstrated that tobacco anther dehiscence is a series of timed programmed cell death (PCD) processes that include the CCC, connective tissue, and stomium. The degenerating crystal idioblasts of the tobacco anther were found to possess two hallmark characteristics that distinguished them from normal PCD cells, namely dynamic changes in CaOx crystals and the appearance of numerous peroxisomes. The accumulation of CaOx and the production of H2 O2 occurred simultaneously or successively before PCD. The peak H2 O2 content was found to appear after the insoluble oxalate. Further, CeCl3 cytochemistry staining was used to detect subcellular H2 O2 , and the precipitate of H2 O2 was primarily present in peroxisomes and around CaOx crystals. These results show that anther dehiscence in N. tabacum is a PCD process in which crystal idioblasts play a vital role in CaOx degradation and H2 O2 production.
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Affiliation(s)
- Jing Liu
- School of Life Science, Northwest University, Xi'an, China
- School of Life Science, Northwest Normal University, Lanzhou, China
| | - Baoxia Bi
- School of Life Science, Northwest University, Xi'an, China
| | - Guanghua Tian
- School of Life Science, Northwest University, Xi'an, China
| | - Ziwei Li
- School of Life Science, Northwest University, Xi'an, China
| | - Weirui Wang
- School of Life Science, Northwest University, Xi'an, China
| | - Fang Ma
- School of Life Science, Northwest University, Xi'an, China
- Institute of Ethnic Preparatory, Ningxia University, Yinchuan, China
| | - Hongyong Shi
- School of Life Science, Guangzhou University, Guangzhou, China
| | - Wenzhe Liu
- School of Life Science, Northwest University, Xi'an, China
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Goldsmith M, Barad S, Peleg Y, Albeck S, Dym O, Brandis A, Mehlman T, Reich Z. The identification and characterization of an oxalyl-CoA synthetase from grass pea (Lathyrus sativus L.). RSC Chem Biol 2022; 3:320-333. [PMID: 35359497 PMCID: PMC8905533 DOI: 10.1039/d1cb00202c] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Accepted: 02/04/2022] [Indexed: 11/21/2022] Open
Abstract
Oxalic acid is a small metabolite that can be found in many plants in which it serves as protection from herbivores, a chelator of metal ions, a regulator of calcium...
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Affiliation(s)
- Moshe Goldsmith
- Dept. of Biomolecular Sciences, Weizmann Institute of Science Rehovot 7610001 Israel +972-8-9344118 +972-8-9343278 +972-8-9342982
| | - Shiri Barad
- Dept. of Biomolecular Sciences, Weizmann Institute of Science Rehovot 7610001 Israel +972-8-9344118 +972-8-9343278 +972-8-9342982
| | - Yoav Peleg
- Dept. of Life Science Core Facilities, Weizmann Institute of Science Rehovot 7610001 Israel
| | - Shira Albeck
- Dept. of Life Science Core Facilities, Weizmann Institute of Science Rehovot 7610001 Israel
| | - Orly Dym
- Dept. of Life Science Core Facilities, Weizmann Institute of Science Rehovot 7610001 Israel
| | - Alexander Brandis
- Dept. of Life Science Core Facilities, Weizmann Institute of Science Rehovot 7610001 Israel
| | - Tevie Mehlman
- Dept. of Life Science Core Facilities, Weizmann Institute of Science Rehovot 7610001 Israel
| | - Ziv Reich
- Dept. of Biomolecular Sciences, Weizmann Institute of Science Rehovot 7610001 Israel +972-8-9344118 +972-8-9343278 +972-8-9342982
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Jin JF, Zhu HH, He QY, Li PF, Fan W, Xu JM, Yang JL, Chen WW. The Tomato Transcription Factor SlNAC063 Is Required for Aluminum Tolerance by Regulating SlAAE3-1 Expression. FRONTIERS IN PLANT SCIENCE 2022; 13:826954. [PMID: 35371150 PMCID: PMC8965521 DOI: 10.3389/fpls.2022.826954] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 01/31/2022] [Indexed: 05/11/2023]
Abstract
Aluminum (Al) toxicity constitutes one of the major limiting factors of plant growth and development on acid soils, which comprises approximately 50% of potentially arable lands worldwide. When suffering Al toxicity, plants reprogram the transcription of genes, which activates physiological and metabolic pathways to deal with the toxicity. Here, we report the role of a NAM, ATAF1, 2 and CUC2 (NAC) transcription factor (TF) in tomato Al tolerance. Among 53 NAC TFs in tomatoes, SlNAC063 was most abundantly expressed in root apex and significantly induced by Al stress. Furthermore, the expression of SlNAC063 was not induced by other metals. Meanwhile, the SlNAC063 protein was localized at the nucleus and has transcriptional activation potentials in yeast. By constructing CRISPR/Cas9 knockout mutants, we found that slnac063 mutants displayed increased sensitivity to Al compared to wild-type plants. However, the mutants accumulated even less Al than wild-type (WT) plants, suggesting that internal tolerance mechanisms but not external exclusion mechanisms are implicated in SlNAC063-mediated Al tolerance in tomatoes. Further comparative RNA-sequencing analysis revealed that only 45 Al-responsive genes were positively regulated by SlNAC063, although the expression of thousands of genes (1,557 upregulated and 636 downregulated) was found to be affected in slnac063 mutants in the absence of Al stress. The kyoto encyclopedia of genes and genomes (KEGG) pathway analysis revealed that SlNAC063-mediated Al-responsive genes were enriched in "phenylpropanoid metabolism," "fatty acid metabolism," and "dicarboxylate metabolism," indicating that SlNAC063 regulates metabolisms in response to Al stress. Quantitative real-time (RT)-PCR analysis showed that the expression of SlAAE3-1 was repressed by SlNAC063 in the absence of Al. However, the expression of SlAAE3-1 was dependent on SlNAC063 in the presence of Al stress. Taken together, our results demonstrate that a NAC TF SlNAC063 is involved in tomato Al tolerance by regulating the expression of genes involved in metabolism, and SlNAC063 is required for Al-induced expression of SlAAE3-1.
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Affiliation(s)
- Jian Feng Jin
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Hui Hui Zhu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Qi Yu He
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Peng Fei Li
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Wei Fan
- State Key Laboratory of Conservation and Utilization of Bio-Resources in Yunnan, The Key Laboratory of Medicinal Plant Biology of Yunnan Province, National and Local Joint Engineering Research Center on Germplasm Innovation and Utilization of Chinese Medicinal Materials in Southwest China, Yunnan Agricultural University, Kunming, China
| | - Ji Ming Xu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Jian Li Yang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China
- *Correspondence: Jian Li Yang,
| | - Wei Wei Chen
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, China
- Research Centre for Plant RNA Signaling, Zhejiang Provincial Key Laboratory for Genetic Improvement and Quality Control of Medicinal Plants, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China
- Wei Wei Chen,
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Foster J, Cheng N, Paris V, Wang L, Wang J, Wang X, Nakata PA. An Arabidopsis Oxalyl-CoA Decarboxylase, AtOXC, Is Important for Oxalate Catabolism in Plants. Int J Mol Sci 2021; 22:ijms22063266. [PMID: 33806862 PMCID: PMC8004701 DOI: 10.3390/ijms22063266] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 03/17/2021] [Accepted: 03/19/2021] [Indexed: 01/17/2023] Open
Abstract
Considering the widespread occurrence of oxalate in nature and its broad impact on a host of organisms, it is surprising that so little is known about the turnover of this important acid. In plants, oxalate oxidase is the most well-studied enzyme capable of degrading oxalate, but not all plants possess this activity. Recently, acyl-activating enzyme 3 (AAE3), encoding an oxalyl-CoA synthetase, was identified in Arabidopsis. This enzyme has been proposed to catalyze the first step in an alternative pathway of oxalate degradation. Since this initial discovery, this enzyme and proposed pathway have been found to be important to other plants and yeast as well. In this study, we identify, in Arabidopsis, an oxalyl-CoA decarboxylase (AtOXC) that is capable of catalyzing the second step in this proposed pathway of oxalate catabolism. This enzyme breaks down oxalyl-CoA, the product of AtAAE3, into formyl-CoA and CO2. AtOXC:GFP localization suggested that this enzyme functions within the cytosol of the cell. An Atoxc knock-down mutant showed a reduction in the ability to degrade oxalate into CO2. This reduction in AtOXC activity resulted in an increase in the accumulation of oxalate and the enzyme substrate, oxalyl-CoA. Size exclusion studies suggest that the enzyme functions as a dimer. Computer modeling of the AtOXC enzyme structure identified amino acids of predicted importance in co-factor binding and catalysis. Overall, these results suggest that AtOXC catalyzes the second step in this alternative pathway of oxalate catabolism.
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Affiliation(s)
- Justin Foster
- USDA/ARS Children’s Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; (J.F.); (N.C.)
| | - Ninghui Cheng
- USDA/ARS Children’s Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; (J.F.); (N.C.)
| | - Vincent Paris
- BioDiscovery Institute, University of North Texas, Denton, TX 76203, USA; (V.P.); (X.W.)
| | - Lingfei Wang
- Department of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX 77030, USA; (L.W.); (J.W.)
| | - Jin Wang
- Department of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX 77030, USA; (L.W.); (J.W.)
| | - Xiaoqiang Wang
- BioDiscovery Institute, University of North Texas, Denton, TX 76203, USA; (V.P.); (X.W.)
| | - Paul A. Nakata
- USDA/ARS Children’s Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; (J.F.); (N.C.)
- Correspondence: ; Tel.: +1-713-798-7013
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