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Marder M, Geremia Parise A. Extending cognition: a vegetal rejoinder to extensionless thought and to extended cognition. Plant Signal Behav 2024; 19:2345984. [PMID: 38654490 DOI: 10.1080/15592324.2024.2345984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 04/17/2024] [Indexed: 04/26/2024]
Abstract
In this paper, we propose a crucial supplement to the framework of plant cognition, namely extending cognition. We argue that plants and other organisms with an open-ended body plan actively extend their cognition when growing tissues or organs. Their cognition expands with their body expansion. After considering the defining features of extending cognition, we present a model where growth, along with aspects of plant physiology (e.g. biochemical exudates), as well as the "negative extension" of growing away from obstacles or stressful environments, are the building blocks for a more refined understanding of plant cognition. We conclude by outlining the general implications of the theory of extending cognition and indicating directions for future research.
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Affiliation(s)
- Michael Marder
- Department of Philosophy, University of the Basque Country, UPV-EHU, Vitoria-Gasteiz, Spain
- Philosophy, Ikerbasque: Basque Foundation for Science, Vitoria, Spain
| | - André Geremia Parise
- School of Biological Sciences, University of Reading, Reading, UK
- School of Agriculture, Policy and Development, University of Reading, Reading, UK
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2
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Chen W, Chen J, Xu Y, Gong H, Shi S, Wang S, Wang H. Applications of the Yariv reagent in polysaccharide analysis and plant physiology from theory to practice. Carbohydr Polym 2024; 329:121781. [PMID: 38286551 DOI: 10.1016/j.carbpol.2024.121781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 12/21/2023] [Accepted: 01/02/2024] [Indexed: 01/31/2024]
Abstract
Arabinogalactan (AG), a biologically active substance found abundantly in plants, is of significant interest in plant physiology due to its unique physicochemical properties. Yariv reagent, widely utilized in AG-II related applications, forms insoluble precipitates when bound to AG-II. This paper provides a comprehensive overview of the synthesis methods, physicochemical properties, and various dissociation methods of the Yariv reagent to enhance its utility in AG-II studies. Furthermore, the review explores the binding mechanisms and applications of the Yariv reagent, highlighting the advancements in studying the Yariv-AG complex in plant physiology. The aim of this review is to inspire new research ideas and foster novel applications of the Yariv reagent from synthesis to implementation.
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Affiliation(s)
- Weihao Chen
- The MOE Key Laboratory for Standardization of Chinese Medicines and the SATCM Key Laboratory for New Resources and Quality Evaluation of Chinese Medicines, Institute of Chinese Materia Medica, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China
| | - Jie Chen
- The MOE Key Laboratory for Standardization of Chinese Medicines and the SATCM Key Laboratory for New Resources and Quality Evaluation of Chinese Medicines, Institute of Chinese Materia Medica, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China
| | - Yongbin Xu
- The MOE Key Laboratory for Standardization of Chinese Medicines and the SATCM Key Laboratory for New Resources and Quality Evaluation of Chinese Medicines, Institute of Chinese Materia Medica, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China
| | - Huan Gong
- The MOE Key Laboratory for Standardization of Chinese Medicines and the SATCM Key Laboratory for New Resources and Quality Evaluation of Chinese Medicines, Institute of Chinese Materia Medica, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China
| | - Songshan Shi
- The MOE Key Laboratory for Standardization of Chinese Medicines and the SATCM Key Laboratory for New Resources and Quality Evaluation of Chinese Medicines, Institute of Chinese Materia Medica, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China
| | - Shunchun Wang
- The MOE Key Laboratory for Standardization of Chinese Medicines and the SATCM Key Laboratory for New Resources and Quality Evaluation of Chinese Medicines, Institute of Chinese Materia Medica, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China.
| | - Huijun Wang
- The MOE Key Laboratory for Standardization of Chinese Medicines and the SATCM Key Laboratory for New Resources and Quality Evaluation of Chinese Medicines, Institute of Chinese Materia Medica, Shanghai University of Traditional Chinese Medicine, Shanghai 201203, China.
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3
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Yuan L, Avello P, Zhu Z, Lock SCL, McCarthy K, Redmond EJ, Davis AM, Song Y, Ezer D, Pitchford JW, Quint M, Xie Q, Xu X, Davis SJ, Ronald J. Complex epistatic interactions between ELF3, PRR9, and PRR7 regulate the circadian clock and plant physiology. Genetics 2024; 226:iyad217. [PMID: 38142447 PMCID: PMC10917503 DOI: 10.1093/genetics/iyad217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Revised: 08/07/2023] [Accepted: 12/05/2023] [Indexed: 12/26/2023] Open
Abstract
Circadian clocks are endogenous timekeeping mechanisms that coordinate internal physiological responses with the external environment. EARLY FLOWERING3 (ELF3), PSEUDO RESPONSE REGULATOR (PRR9), and PRR7 are essential components of the plant circadian clock and facilitate entrainment of the clock to internal and external stimuli. Previous studies have highlighted a critical role for ELF3 in repressing the expression of PRR9 and PRR7. However, the functional significance of activity in regulating circadian clock dynamics and plant development is unknown. To explore this regulatory dynamic further, we first employed mathematical modeling to simulate the effect of the prr9/prr7 mutation on the elf3 circadian phenotype. These simulations suggested that simultaneous mutations in prr9/prr7 could rescue the elf3 circadian arrhythmia. Following these simulations, we generated all Arabidopsis elf3/prr9/prr7 mutant combinations and investigated their circadian and developmental phenotypes. Although these assays could not replicate the results from the mathematical modeling, our results have revealed a complex epistatic relationship between ELF3 and PRR9/7 in regulating different aspects of plant development. ELF3 was essential for hypocotyl development under ambient and warm temperatures, while PRR9 was critical for root thermomorphogenesis. Finally, mutations in prr9 and prr7 rescued the photoperiod-insensitive flowering phenotype of the elf3 mutant. Together, our results highlight the importance of investigating the genetic relationship among plant circadian genes.
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Affiliation(s)
- Li Yuan
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475004, China
| | - Paula Avello
- Department of Mathematics, University of York, York, YO10 5DD, UK
- School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Zihao Zhu
- Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle (Saale) 06108, Germany
| | - Sarah C L Lock
- Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - Kayla McCarthy
- Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - Ethan J Redmond
- Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - Amanda M Davis
- Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - Yang Song
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475004, China
| | - Daphne Ezer
- Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - Jonathan W Pitchford
- Department of Mathematics, University of York, York, YO10 5DD, UK
- Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - Marcel Quint
- Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle (Saale) 06108, Germany
| | - Qiguang Xie
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475004, China
| | - Xiaodong Xu
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475004, China
| | - Seth J Davis
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475004, China
- Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
| | - James Ronald
- Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
- School of Molecular Biosciences, College of Medical, Veterinary and Life Sciences, University of Glasgow, Bower Building, University Avenue, Glasgow G12 8QQ, UK
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Uddin N, Li X, Ullah MW, Sethupathy S, Ma K, Zahoor, Elboughdiri N, Khan KA, Zhu D. Lignin developmental patterns and Casparian strip as apoplastic barriers: A review. Int J Biol Macromol 2024; 260:129595. [PMID: 38253138 DOI: 10.1016/j.ijbiomac.2024.129595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 12/30/2023] [Accepted: 01/17/2024] [Indexed: 01/24/2024]
Abstract
Lignin and Casparian strips are two essential components of plant cells that play critical roles in plant development regulate nutrients and water across the plants cell. Recent studies have extensively investigated lignin diversity and Casparian strip formation, providing valuable insights into plant physiology. This review presents the established lignin biosynthesis pathway, as well as the developmental patterns of lignin and Casparian strip and transcriptional network associated with Casparian strip formation. It describes the biochemical and genetic mechanisms that regulate lignin biosynthesis and deposition in different plants cell types and tissues. Additionally, the review highlights recent studies that have uncovered novel lignin biosynthesis genes and enzymatic pathways, expanding our understanding of lignin diversity. This review also discusses the developmental patterns of Casparian strip in roots and their role in regulating nutrient and water transport, focusing on recent genetic and molecular studies that have identified regulators of Casparian strip formation. Previous research has shown that lignin biosynthesis genes also play a role in Casparian strip formation, suggesting that these processes are interconnected. In conclusion, this comprehensive overview provides insights into the developmental patterns of lignin diversity and Casparian strip as apoplastic barriers. It also identifies future research directions, including the functional characterization of novel lignin biosynthesis genes and the identification of additional regulators of Casparian strip formation. Overall, this review enhances our understanding of the complex and interconnected processes that drive plant growth, pathogen defense, regulation and development.
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Affiliation(s)
- Nisar Uddin
- Biofuels Institute, School of Emergency Management, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Xia Li
- Biofuels Institute, School of Emergency Management, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Muhammad Wajid Ullah
- Biofuels Institute, School of Emergency Management, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Sivasamy Sethupathy
- Biofuels Institute, School of Emergency Management, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Keyu Ma
- Biofuels Institute, School of Emergency Management, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Zahoor
- Biofuels Institute, School of Emergency Management, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Noureddine Elboughdiri
- Chemical Engineering Department, College of Engineering, University of Ha'il, Ha'il 81441, Saudi Arabia; Chemical Engineering Process Department, National School of Engineers Gabes, University of Gabes, Gabes 6029, Tunisia
| | - Khalid Ali Khan
- Applied College, Mahala Campus and the Unit of Bee Research and Honey Production/Research Center for Advanced Materials Science (RCAMS), King Khalid University, Abha 61413, Saudi Arabia
| | - Daochen Zhu
- Biofuels Institute, School of Emergency Management, School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou 215009, China.
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5
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Rehman M, Pan J, Mubeen S, Ma W, Luo D, Cao S, Saeed W, Jin G, Li R, Chen T, Chen P. Morpho-physio-biochemical, molecular, and phytoremedial responses of plants to red, blue, and green light: a review. Environ Sci Pollut Res Int 2024; 31:20772-20791. [PMID: 38393568 DOI: 10.1007/s11356-024-32532-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Accepted: 02/14/2024] [Indexed: 02/25/2024]
Abstract
Light is a basic requirement to drive carbon metabolism in plants and supports life on earth. Spectral quality greatly affects plant morphology, physiology, and metabolism of various biochemical pathways. Among visible light spectrum, red, blue, and green light wavelengths affect several mechanisms to contribute in plant growth and productivity. In addition, supplementation of red, blue, or green light with other wavelengths showed vivid effects on the plant biology. However, response of plants differs in different species and growing conditions. This review article provides a detailed view and interpretation of existing knowledge and clarifies underlying mechanisms that how red, blue, and green light spectra affect plant morpho-physiological, biochemical, and molecular parameters to make a significant contribution towards improved crop production, fruit quality, disease control, phytoremediation potential, and resource use efficiency.
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Affiliation(s)
- Muzammal Rehman
- College of Agriculture, Guangxi Key Laboratory of Agro-Environment and Agric-Products Safety; Key Laboratory of Crop Genetic Breeding and Germplasm Innovation, Guangxi University, Nanning, 530004, China
| | - Jiao Pan
- College of Agriculture, Guangxi Key Laboratory of Agro-Environment and Agric-Products Safety; Key Laboratory of Crop Genetic Breeding and Germplasm Innovation, Guangxi University, Nanning, 530004, China
| | - Samavia Mubeen
- College of Agriculture, Guangxi Key Laboratory of Agro-Environment and Agric-Products Safety; Key Laboratory of Crop Genetic Breeding and Germplasm Innovation, Guangxi University, Nanning, 530004, China
| | - Wenyue Ma
- College of Agriculture, Guangxi Key Laboratory of Agro-Environment and Agric-Products Safety; Key Laboratory of Crop Genetic Breeding and Germplasm Innovation, Guangxi University, Nanning, 530004, China
| | - Dengjie Luo
- College of Agriculture, Guangxi Key Laboratory of Agro-Environment and Agric-Products Safety; Key Laboratory of Crop Genetic Breeding and Germplasm Innovation, Guangxi University, Nanning, 530004, China
| | - Shan Cao
- College of Agriculture, Guangxi Key Laboratory of Agro-Environment and Agric-Products Safety; Key Laboratory of Crop Genetic Breeding and Germplasm Innovation, Guangxi University, Nanning, 530004, China
| | - Wajid Saeed
- College of Agriculture, Guangxi Key Laboratory of Agro-Environment and Agric-Products Safety; Key Laboratory of Crop Genetic Breeding and Germplasm Innovation, Guangxi University, Nanning, 530004, China
| | - Gang Jin
- Guangxi Subtropical Crops Research Institute, Nanning, 530001, China
| | - Ru Li
- College of Life Science and Technology, Guangxi University, Nanning, 530004, China
| | - Tao Chen
- Guangxi Subtropical Crops Research Institute, Nanning, 530001, China
| | - Peng Chen
- College of Agriculture, Guangxi Key Laboratory of Agro-Environment and Agric-Products Safety; Key Laboratory of Crop Genetic Breeding and Germplasm Innovation, Guangxi University, Nanning, 530004, China.
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6
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Yang Y, He T, Ravindran P, Wen F, Krishnamurthy P, Wang L, Zhang Z, Kumar PP, Chae E, Lee C. All-organic transparent plant e-skin for noninvasive phenotyping. Sci Adv 2024; 10:eadk7488. [PMID: 38363835 PMCID: PMC10871535 DOI: 10.1126/sciadv.adk7488] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Accepted: 01/16/2024] [Indexed: 02/18/2024]
Abstract
Real-time in situ monitoring of plant physiology is essential for establishing a phenotyping platform for precision agriculture. A key enabler for this monitoring is a device that can be noninvasively attached to plants and transduce their physiological status into digital data. Here, we report an all-organic transparent plant e-skin by micropatterning poly(3,4-ethylenedioxythiophene) polystyrene sulfonate (PEDOT:PSS) on polydimethylsiloxane (PDMS) substrate. This plant e-skin is optically and mechanically invisible to plants with no observable adverse effects to plant health. We demonstrate the capabilities of our plant e-skins as strain and temperature sensors, with the application to Brassica rapa leaves for collecting corresponding parameters under normal and abiotic stress conditions. Strains imposed on the leaf surface during growth as well as diurnal fluctuation of surface temperature were captured. We further present a digital-twin interface to visualize real-time plant surface environment, providing an intuitive and vivid platform for plant phenotyping.
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Affiliation(s)
- Yanqin Yang
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore 117583, Singapore
- Center for Intelligent Sensors and MEMS (CISM), National University of Singapore, Singapore 117608, Singapore
| | - Tianyiyi He
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore 117583, Singapore
- Center for Intelligent Sensors and MEMS (CISM), National University of Singapore, Singapore 117608, Singapore
| | - Pratibha Ravindran
- Department of Biological Sciences and Research Center for Sustainable Urban Farming, National University of Singapore, Singapore 117558, Singapore
| | - Feng Wen
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore 117583, Singapore
- Center for Intelligent Sensors and MEMS (CISM), National University of Singapore, Singapore 117608, Singapore
| | - Pannaga Krishnamurthy
- Department of Biological Sciences and Research Center for Sustainable Urban Farming, National University of Singapore, Singapore 117558, Singapore
| | - Luwei Wang
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore 117583, Singapore
- Center for Intelligent Sensors and MEMS (CISM), National University of Singapore, Singapore 117608, Singapore
| | - Zixuan Zhang
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore 117583, Singapore
- Center for Intelligent Sensors and MEMS (CISM), National University of Singapore, Singapore 117608, Singapore
| | - Prakash P Kumar
- Department of Biological Sciences and Research Center for Sustainable Urban Farming, National University of Singapore, Singapore 117558, Singapore
| | - Eunyoung Chae
- Department of Biological Sciences and Research Center for Sustainable Urban Farming, National University of Singapore, Singapore 117558, Singapore
| | - Chengkuo Lee
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore 117583, Singapore
- Center for Intelligent Sensors and MEMS (CISM), National University of Singapore, Singapore 117608, Singapore
- National University of Singapore Suzhou Research Institute (NUSRI), Suzhou Industrial Park, Suzhou 215123, China
- NUS Graduate School-Integrative Sciences and Engineering Programme (ISEP), National University of Singapore, Singapore 119077, Singapore
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Sun Z, An Y, Kong J, Zhao J, Cui W, Nie T, Zhang T, Liu W, Wu L. Exploring the spatio-temporal patterns of global mangrove gross primary production and quantifying the factors affecting its estimation, 1996-2020. Sci Total Environ 2024; 908:168262. [PMID: 37918724 DOI: 10.1016/j.scitotenv.2023.168262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 10/17/2023] [Accepted: 10/30/2023] [Indexed: 11/04/2023]
Abstract
Mangrove ecosystems, as an important component of "Blue Carbon", play a curial role on global carbon cycling; however, the lack of the global estimates of mangrove ecosystem gross primary production (GPP) and the underlying environmental controls on its estimation remain a gap in knowledge. In this study, we utilized global mangrove eddy covariance data and applied Gaussian Process Regression (GPR) to estimate GPP for global mangrove ecosystems, aiming to elucidate the factors influencing these estimates. The optimal GPR achieved favorable estimation performance through cross-validation (R2 = 0.90, RMSE = 0.92 gC/m2/day, WI = 0.86). Over the study period, the globally annual averaged GPP was 2054.53 ± 38.51 gC/m2/yr (comparable to that of evergreen broadleaf forests and exceeds the GPP of most other plant function types), amounting to a total of 304.82 ± 7.71TgC/yr, hotspots exceeding 3000 gC/m2/yr observed near the equator. The analysis revealed a decline in global mangrove GPP during 1996-2020 of -0.89 TgC/yr. Human activities (changes in mangrove cover area) played a relatively consistent role in contributing to this decrease. Conversely, variations in external environmental conditions showed distinct inter-annual differences in their impact. The spatio-temporal distribution patterns of mangrove ecosystems GPP (e.g., the bimodal annual pattern, latitudinal gradients, etc.) demonstrated the regulatory influence of external environmental conditions on GPP estimates. The model ensemble attribution analysis indicated that the fraction of absorbed photosynthetically active radiation exerted the dominant control on GPP estimations, while temperature, salinity, and humidity acted as secondary constraints. The findings of this study provide valuable insights for monitoring, modeling, and managing mangrove ecosystems GPP; and underscore the critical role of mangroves in global carbon sequestration. By quantifying the influences of environmental factors, we enhance our understanding of mangrove carbon cycling estimates, thereby helping sustain of these disproportionately productive ecosystems.
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Affiliation(s)
- Zhongyi Sun
- School of Ecology and Environment, Hainan University, Haikou 570208, China; Key Laboratory of Agro-Forestry Environmental Processes and Ecological Regulation, Hainan University, Haikou 570228, China
| | - Yinghe An
- School of Ecology and Environment, Hainan University, Haikou 570208, China
| | - Jiayan Kong
- School of Ecology and Environment, Hainan University, Haikou 570208, China
| | - Junfu Zhao
- Hainan Provincial Ecological and Environmental Monitoring Centre, Haikou 571126, China
| | - Wei Cui
- Development Research Center, National Forestry and Grassland Administration, Beijing 100714, China
| | - Tangzhe Nie
- School of Water Conservancy and Electric Power, Heilongjiang University, Harbin 150080, China
| | - Tianyou Zhang
- College of Grassland Agriculture, Northwest A&F University, Xianyang 712100, China
| | - Wenjie Liu
- School of Ecology and Environment, Hainan University, Haikou 570208, China; Key Laboratory of Agro-Forestry Environmental Processes and Ecological Regulation, Hainan University, Haikou 570228, China
| | - Lan Wu
- School of Ecology and Environment, Hainan University, Haikou 570208, China.
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8
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Sun T, Jiang R, Liu Y, Xu P. Methods for Functional Physiological Phenotyping and High-Order Data Quantification. Methods Mol Biol 2024; 2787:55-68. [PMID: 38656481 DOI: 10.1007/978-1-0716-3778-4_3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
This chapter presents the application of Plantarray, a high-throughput platform commercially available for noninvasive monitoring of plant functional physiology phenotyping (FPP). The platform continuously measures water flux in the soil-plant-atmosphere for each plant in dynamic environments. To better interpret the massive phenotypic data acquired with FPP, several quantitative analysis methods were demonstrated for various types of data. Simple mathematical models were utilized to fit characteristic parameters of plant transpiration response to drought stress. Additionally, ecophysiological models were employed to quantify the sensitivity of transpiration to radiation and vapor pressure deficit (VPD) as component traits and predict more complex higher-order traits. The established protocols provide a tangible tool for integrating FPP and model analysis to address complex traits.
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Affiliation(s)
- Ting Sun
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology, College of Life Sciences, China Jiliang University, Hangzhou, China
| | - Rujia Jiang
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology, College of Life Sciences, China Jiliang University, Hangzhou, China
| | - Yunxiu Liu
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology, College of Life Sciences, China Jiliang University, Hangzhou, China
| | - Pei Xu
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology, College of Life Sciences, China Jiliang University, Hangzhou, China.
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9
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Ren Y, Wang H, Harrison SP, Prentice IC, Atkin OK, Smith NG, Mengoli G, Stefanski A, Reich PB. Reduced global plant respiration due to the acclimation of leaf dark respiration coupled with photosynthesis. New Phytol 2024; 241:578-591. [PMID: 37897087 DOI: 10.1111/nph.19355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Accepted: 10/10/2023] [Indexed: 10/29/2023]
Abstract
Leaf dark respiration (Rd ) acclimates to environmental changes. However, the magnitude, controls and time scales of acclimation remain unclear and are inconsistently treated in ecosystem models. We hypothesized that Rd and Rubisco carboxylation capacity (Vcmax ) at 25°C (Rd,25 , Vcmax,25 ) are coordinated so that Rd,25 variations support Vcmax,25 at a level allowing full light use, with Vcmax,25 reflecting daytime conditions (for photosynthesis), and Rd,25 /Vcmax,25 reflecting night-time conditions (for starch degradation and sucrose export). We tested this hypothesis temporally using a 5-yr warming experiment, and spatially using an extensive field-measurement data set. We compared the results to three published alternatives: Rd,25 declines linearly with daily average prior temperature; Rd at average prior night temperatures tends towards a constant value; and Rd,25 /Vcmax,25 is constant. Our hypothesis accounted for more variation in observed Rd,25 over time (R2 = 0.74) and space (R2 = 0.68) than the alternatives. Night-time temperature dominated the seasonal time-course of Rd , with an apparent response time scale of c. 2 wk. Vcmax dominated the spatial patterns. Our acclimation hypothesis results in a smaller increase in global Rd in response to rising CO2 and warming than is projected by the two of three alternative hypotheses, and by current models.
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Affiliation(s)
- Yanghang Ren
- Department of Earth System Science, Ministry of Education Key Laboratory for Earth System Modeling, Institute for Global Change Studies, Tsinghua University, Beijing, 100084, China
| | - Han Wang
- Department of Earth System Science, Ministry of Education Key Laboratory for Earth System Modeling, Institute for Global Change Studies, Tsinghua University, Beijing, 100084, China
| | - Sandy P Harrison
- Department of Earth System Science, Ministry of Education Key Laboratory for Earth System Modeling, Institute for Global Change Studies, Tsinghua University, Beijing, 100084, China
- School of Archaeology, Geography and Environmental Sciences (SAGES), University of Reading, Reading, RG6 6AH, UK
| | - I Colin Prentice
- Department of Earth System Science, Ministry of Education Key Laboratory for Earth System Modeling, Institute for Global Change Studies, Tsinghua University, Beijing, 100084, China
- Department of Life Sciences, Georgina Mace Centre for the Living Planet, Imperial College London, Silwood Park Campus, Buckhurst Road, Ascot, SL5 7PY, UK
| | - Owen K Atkin
- ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, The Australian National University, Building 134, Canberra, ACT, 2601, Australia
- Division of Plant Sciences, Research School of Biology, The Australian National University, Building 46, Canberra, ACT, 2601, Australia
| | - Nicholas G Smith
- Department of Biological Sciences, Texas Tech University, Lubbock, TX, 79409, USA
| | - Giulia Mengoli
- Department of Life Sciences, Georgina Mace Centre for the Living Planet, Imperial College London, Silwood Park Campus, Buckhurst Road, Ascot, SL5 7PY, UK
| | - Artur Stefanski
- Department of Forest Resources, University of Minnesota, St Paul, MN, 55108, USA
| | - Peter B Reich
- Department of Forest Resources, University of Minnesota, St Paul, MN, 55108, USA
- Institute for Global Change Biology, and School for the Environment and Sustainability, University of Michigan, Ann Arbor, MI, 48109, USA
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, 2753, Australia
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10
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Fan M, Stamford J, Lawson T. Using Infrared Thermography for High-Throughput Plant Phenotyping. Methods Mol Biol 2024; 2790:317-332. [PMID: 38649578 DOI: 10.1007/978-1-0716-3790-6_16] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/25/2024]
Abstract
Infrared thermography offers a rapid, noninvasive method for measuring plant temperature, which provides a proxy for stomatal conductance and plant water status and can therefore be used as an index for plant stress. Thermal imaging can provide an efficient method for high-throughput screening of large numbers of plants. This chapter provides guidelines for using thermal imaging equipment and illustrative methodologies, coupled with essential considerations, to access plant physiological processes.
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Affiliation(s)
- Mengjie Fan
- School of Life Sciences, University of Essex, Colchester, UK
| | - John Stamford
- School of Life Sciences, University of Essex, Colchester, UK
| | - Tracy Lawson
- School of Life Sciences, University of Essex, Colchester, UK.
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11
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Pachú JK, Macedo FC, Malaquias JB, Ramalho FS, Oliveira RF, Godoy WA, Salustino AS. Electrical signalling and plant response to herbivory: A short review. Plant Signal Behav 2023; 18:2277578. [PMID: 38051638 PMCID: PMC10732603 DOI: 10.1080/15592324.2023.2277578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 10/18/2023] [Indexed: 12/07/2023]
Abstract
For a long time, electrical signaling was neglected at the expense of signaling studies in plants being concentrated with chemical and hydraulic signals. Studies conducted in recent years have revealed that plants are capable of emitting, processing, and transmitting bioelectrical signals to regulate a wide variety of physiological functions. Many important biological and physiological phenomena are accompanied by these cellular electrical manifestations, which supports the hypothesis about the importance of bioelectricity as a fundamental 'model' for response the stresses environmental and for activities regeneration of these organisms. Electrical signals have also been characterized and discriminated against in genetically modified plants under stress mediated by sucking insects and/or by the application of systemic insecticides. Such results can guide future studies that aim to elucidate the factors involved in the processes of resistance to stress and plant defense, thus aiding in the development of successful strategies in integrated pest management. Therefore, this mini review includes the results of studies aimed at electrical signaling in response to biotic stress. We also demonstrated how the generation and propagation of electrical signals takes place and included a description of how these electrical potentials are measured.
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Affiliation(s)
- Jéssica K.S Pachú
- Department of Entomology and Acarology, Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo (USP), Piracicaba, São Paulo, Brazil
| | - Francynes C.O. Macedo
- Department of Biological Sciences, Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo (USP), Piracicaba, São Paulo, Brazil
| | - José B Malaquias
- Entomology Laboratory, Agrarian Science Center, Federal University of Paraíba, Areia, Brazil
| | - Francisco S. Ramalho
- Biological Control Unit, Empresa Brasileira de Pesquisa Agropecuaria, Campina Grande, Brazil
| | - Ricardo F. Oliveira
- Department of Biological Sciences, Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo (USP), Piracicaba, São Paulo, Brazil
| | - Wesley A.C Godoy
- Department of Entomology and Acarology, Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo (USP), Piracicaba, São Paulo, Brazil
| | - Angélica S. Salustino
- Entomology Laboratory, Agrarian Science Center, Federal University of Paraíba, Areia, Brazil
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12
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Montgomery BL. Following the Principles of the Universe: Lessons from Plants on Individual and Communal Thriving. Integr Comp Biol 2023; 63:1391-1398. [PMID: 37604783 PMCID: PMC10755201 DOI: 10.1093/icb/icad117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 08/06/2023] [Accepted: 08/13/2023] [Indexed: 08/23/2023] Open
Abstract
The means by which plants and other organisms exist in and respond to dynamic environments to support their thriving as individuals and in communities provide lessons for humans on sustainable and resilient thriving. First examined in my book, Lessons from Plants (Harvard University Press, 2021), I explore herein the following question: "How can plants teach us to be better humans?" I consider how insights gathered from plant physiology, phenotypic plasticity, and other plant growth phenomena can help us improve our lives and our society, with a focus on highlighting academic and scientific environments. Genetically identical plants can have very different appearances, metabolisms, and behaviors if the external environments in which they are growing differ in light or nutrient availability, among other environmental differences. Plants are even capable of transformative behaviors that enable them to maximize their chances of survival in dynamic and sometimes unfriendly environments, while also transforming the environment in which they exist in the process. Highlighting examples from research on, for instance, plants' responses to light and nutrient cues, I focus on insights for humans derived from lessons from plants. These lessons focus on how plants achieve their own purposes by following common principles of the universe on thriving and resilience as individuals and in communities.
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Affiliation(s)
- Beronda L Montgomery
- Department of Biology, Grinnell College, 1121 Park Street, Grinnell, IA 50112, USA
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13
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Hirai MY, Mizutani M, Nakamura Y. Revisiting Plant Metabolite Functions. Plant Cell Physiol 2023; 64:1433-1435. [PMID: 38079218 DOI: 10.1093/pcp/pcad155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 11/30/2023] [Accepted: 12/11/2023] [Indexed: 12/23/2023]
Affiliation(s)
- Masami Yokota Hirai
- Metabolic Systems Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045 Japan
| | - Masaharu Mizutani
- Graduate School of Agricultural Science, Kobe University, Kobe, Hyogo, 657-8501 Japan
| | - Yuki Nakamura
- Plant Lipid Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045 Japan
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14
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Liu L, Li X, Wang C, Ni Y, Liu X. The Role of Chloride Channels in Plant Responses to NaCl. Int J Mol Sci 2023; 25:19. [PMID: 38203189 PMCID: PMC10778697 DOI: 10.3390/ijms25010019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 12/10/2023] [Accepted: 12/15/2023] [Indexed: 01/12/2024] Open
Abstract
Chloride (Cl-) is considered a crucial nutrient for plant growth, but it can be a challenge under saline conditions. Excessive accumulation of Cl- in leaves can cause toxicity. Chloride channels (CLCs) are expressed in the inner membranes of plant cells and function as essential Cl- exchangers or channels. In response to salt stress in plants, CLCs play a crucial role, and CLC proteins assist in maintaining the intracellular Cl- homeostasis by sequestering Cl- into vacuoles. Sodium chloride (NaCl) is the primary substance responsible for causing salt-induced phytotoxicity. However, research on plant responses to Cl- stress is comparatively rare, in contrast to that emphasizing Na+. This review provides a comprehensive overview of the plant response and tolerance to Cl- stress, specifically focusing on comparative analysis of CLC protein structures in different species. Additionally, to further gain insights into the underlying mechanisms, the study summarizes the identified CLC genes that respond to salt stress. This review provides a comprehensive overview of the response of CLCs in terrestrial plants to salt stress and their biological functions, aiming to gain further insights into the mechanisms underlying the response of CLCs in plants to salt stress.
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Affiliation(s)
- Lulu Liu
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China;
- College of Physics and Optoelectronic Engineering, Shenzhen University, Shenzhen 518060, China
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China; (X.L.); (C.W.); (Y.N.)
| | - Xiaofei Li
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China; (X.L.); (C.W.); (Y.N.)
| | - Chao Wang
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China; (X.L.); (C.W.); (Y.N.)
| | - Yuxin Ni
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China; (X.L.); (C.W.); (Y.N.)
| | - Xunyan Liu
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China; (X.L.); (C.W.); (Y.N.)
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15
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An T, Kuang Q, Wu Y, Gao Y, Zhang Y, Mickan BS, Xu B, Zhang S, Deng X, Chen Y. Variability in cadmium stress tolerance among four maize genotypes: Impacts on plant physiology, root morphology, and chloroplast microstructure. Plant Physiol Biochem 2023; 205:108135. [PMID: 37979572 DOI: 10.1016/j.plaphy.2023.108135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 09/22/2023] [Accepted: 10/22/2023] [Indexed: 11/20/2023]
Abstract
Cadmium (Cd) is detrimental to both plants and humans. Maize (Zea mays L.) genotypes exhibit variations in Cd accumulations. This study examined variations in Cd accumulation and tolerance among four maize genotypes with contrasting root morphology. The four maize genotypes were cultivated in a semi-hydroponic system with three Cd concentrations (0, 10, 20 μmol L-1). The effects of Cd on plant growth and physiology were assessed 39 days after transplanting. Results showed that root characteristics were positively correlated with root Cd accumulation and the bioconcentration factor under Cd20 treatment. Genotypes Shengrui999 and Zhengdan958 exhibited higher total Cd content than Xundan29 and Zhongke11 under Cd20 conditions. Cd toxicity led to membrane degradation of chloroplast mesophyll cells, loosening and swelling of grana lamella, and reduced starch reserves. The greater tolerance of Shengrui999 and Zhengdan958 was contributed to factors such as root biomass, shallower root depth, higher Cd content, accumulation of osmolyte such as soluble protein, antioxidant activities such as catalase (CAT), and the presence of phytohormone gibberellic acid. The study establishes a link between root morphology, Cd accumulation, and tolerance in maize plants, as demonstrated by the higher Cd accumulation and shallower root system in Cd-tolerant genotypes. This research provides a foundation for breeding maize cultivars better suited for adaptation to moderate Cd-contaminated environments.
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Affiliation(s)
- Tingting An
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi, 712100, China; College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100, China; The UWA Institute of Agriculture & School of Agriculture and Environment, The University of Western Australia, Perth, 6009, Australia
| | - Qiqiang Kuang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi, 712100, China; College of Resources and Environment, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Yujie Wu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi, 712100, China; College of Resources and Environment, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Yamin Gao
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi, 712100, China; College of Resources and Environment, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Yi Zhang
- College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Bede S Mickan
- The UWA Institute of Agriculture & School of Agriculture and Environment, The University of Western Australia, Perth, 6009, Australia
| | - Bingcheng Xu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Suiqi Zhang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Xiping Deng
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Yinglong Chen
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, Shaanxi, 712100, China; The UWA Institute of Agriculture & School of Agriculture and Environment, The University of Western Australia, Perth, 6009, Australia.
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16
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Pawlik-Skowrońska B, Bownik A, Pogorzelec M, Kulczycka J, Sumińska A. First report on adverse effects of cyanobacterial anabaenopeptins, aeruginosins, microginin and their mixtures with microcystin and cylindrospermopsin on aquatic plant physiology: An experimental approach. Toxicon 2023; 236:107333. [PMID: 37951248 DOI: 10.1016/j.toxicon.2023.107333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 10/12/2023] [Accepted: 11/01/2023] [Indexed: 11/13/2023]
Abstract
Cyanobacteria produce a variety of oligopeptides beyond microcystins and other metabolites. Their biological activities are not fully recognized especially to aquatic plants. Acute toxicity tests on Spirodela polyrhiza and Lemna minor exposed to a range of concentrations of cyanobacterial metabolites: anabaenopeptins (ANA-A, ANA-B), aeruginosins 98 (Aer-A, Aer-B), microginin-FR1 (MG-FR1), microcystin-LR (MC-LR) and cylindrospermopsin (Cyl) were carried out to compare their influence on plant physiology. Effects of their binary mixtures were determined by isobole approach and calculation of the combination index (CI) that indicates a type of metabolites' interaction. Cyclic oligopeptides microcystin-LR and anabaenopeptin-A revealed the strongest inhibition of S. polyrhiza growth while other metabolites appeared less toxic. Oxygen evolution was inhibited by Cyl, MC-LR, ANA-A, ANA-B, while both variants of aeruginosins and MG-FR1 did not affect this process. Photosynthetic pigments' contents decreased in S. polyrhiza exposed to ANA-A and Cyl, while MC-LR and Aer-A caused their slight increase. 96 h-EC50 values showed that the growth of L. minor was more sensitive to MC-LR, ANA-A, MG-FR1 and Cyl than the growth of S. polyrhiza. In S. polyrhiza synergistic effects of all the binary mixtures of peptides with MC-LR on oxygen evolution were observed, while antagonistic one on the growth of S. polyrhiza exposed to the mixtures with aeruginosins and ANA-A. The mixtures of MC-LR and MG-FR1 with cylindrospermopsin revealed synergistic effects on the growth but antagonistic one to the O2 evolution. Quadruple mixtures (ANA-A + MC-LR + MG-FR1+Cyl) did not reveal any inhibitive effect on the plant growth and very slight on the oxygen evolution, irrespectively of their total concentrations. Various effects caused by ANA-A and ANA-B suggest the importance of molecule structures of metabolites for toxicity. Composition of the mixtures of cyanobacterial metabolites was essential for the observed effects.
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Affiliation(s)
- Barbara Pawlik-Skowrońska
- Department of Hydrobiology and Protection of Ecosystems, Faculty of Environmental Biology, University of Life Sciences in Lublin, Dobrzanskiego 37, 20-262, Lublin, Poland.
| | - Adam Bownik
- Department of Hydrobiology and Protection of Ecosystems, Faculty of Environmental Biology, University of Life Sciences in Lublin, Dobrzanskiego 37, 20-262, Lublin, Poland
| | - Magdalena Pogorzelec
- Department of Hydrobiology and Protection of Ecosystems, Faculty of Environmental Biology, University of Life Sciences in Lublin, Dobrzanskiego 37, 20-262, Lublin, Poland
| | - Justyna Kulczycka
- Department of Hydrobiology and Protection of Ecosystems, Faculty of Environmental Biology, University of Life Sciences in Lublin, Dobrzanskiego 37, 20-262, Lublin, Poland
| | - Aleksandra Sumińska
- Department of Hydrobiology and Protection of Ecosystems, Faculty of Environmental Biology, University of Life Sciences in Lublin, Dobrzanskiego 37, 20-262, Lublin, Poland
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17
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Abstract
There are two main life cycles in plants-annual and perennial1,2. These life cycles are associated with different traits that determine ecosystem function3,4. Although life cycles are textbook examples of plant adaptation to different environments, we lack comprehensive knowledge regarding their global distributional patterns. Here we assembled an extensive database of plant life cycle assignments of 235,000 plant species coupled with millions of georeferenced datapoints to map the worldwide biogeography of these plant species. We found that annual plants are half as common as initially thought5-8, accounting for only 6% of plant species. Our analyses indicate that annuals are favoured in hot and dry regions. However, a more accurate model shows that the prevalence of annual species is driven by temperature and precipitation in the driest quarter (rather than yearly means), explaining, for example, why some Mediterranean systems have more annuals than desert systems. Furthermore, this pattern remains consistent among different families, indicating convergent evolution. Finally, we demonstrate that increasing climate variability and anthropogenic disturbance increase annual favourability. Considering future climate change, we predict an increase in annual prevalence for 69% of the world's ecoregions by 2060. Overall, our analyses raise concerns for ecosystem services provided by perennial plants, as ongoing changes are leading to a higher proportion of annual plants globally.
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Affiliation(s)
- Tyler Poppenwimer
- School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel
- Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Itay Mayrose
- School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.
| | - Niv DeMalach
- Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel.
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18
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LoPresti E. Plant physiology: The overturning of assumed functional relevance of 'salt' bladders. Curr Biol 2023; 33:R1144-R1145. [PMID: 37935125 DOI: 10.1016/j.cub.2023.09.036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2023]
Abstract
For decades, the function of epidermal bladder cells in quinoa and iceplant was thought to be physiological because of their function in a related species. Exciting new research carefully demolishes that assumption, suggesting that these structures serve primarily biotic defense roles, setting up a great many interesting, important questions.
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Affiliation(s)
- Eric LoPresti
- Department of Biological Sciences, University of South Carolina, 715 Sumter Street, Columbia, SC 29208, USA.
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19
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Sun T, Zhang X, Lv S, Lin X, Ma J, Liu J, Fang Q, Tang L, Liu L, Cao W, Liu B, Zhu Y. Improving the predictions of leaf photosynthesis during and after short-term heat stress with current rice models. Plant Cell Environ 2023; 46:3353-3370. [PMID: 37575035 DOI: 10.1111/pce.14683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 07/26/2023] [Accepted: 07/31/2023] [Indexed: 08/15/2023]
Abstract
In response to increasing global warming, extreme heat stress significantly alters photosynthetic production. While numerous studies have investigated the temperature effects on photosynthesis, factors like vapour pressure deficit (VPD), leaf nitrogen, and feedback of sink limitation during and after extreme heat stress remain underexplored. This study assessed photosynthesis calculations in seven rice growth models using observed maximum photosynthetic rate (Pmax ) during and after short-term extreme heat stress in multi-year environment-controlled experiments. Biochemical models (FvCB-type) outperformed light response curve-based models (LRC-type) when incorporating observed leaf nitrogen, photosynthetically active radiation, temperatures, and intercellular CO2 concentration (Ci ) as inputs. Prediction uncertainty during heat stress treatment primarily resulted from variation in temperatures and Ci . Improving FVPD (the slope for the linear effect of VPD on Ci /Ca ) to be temperature-dependent, rather than constant as in original models, significantly improved Ci prediction accuracy under heat stress. Leaf nitrogen response functions led to model variation in leaf photosynthesis predictions after heat stress, which was mitigated by calibrated nitrogen response functions based on active photosynthetic nitrogen. Additionally, accounting for observed differences in carbohydrate accumulation between panicles and stems during grain filling improved the feedback of sink limitation, reducing Ci overestimation under heat stress treatments.
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Affiliation(s)
- Ting Sun
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, Jiangsu, China
- Key Laboratory of Specialty Agri-product Quality and Hazard Controlling Technology of Zhejiang Province, College of Life Sciences, China Jiliang University, Hangzhou, Zhejiang, China
| | - Xiaohu Zhang
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Suyu Lv
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Xuanhao Lin
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Jifeng Ma
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Jiaming Liu
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Qizhao Fang
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Liang Tang
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Leilei Liu
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Weixing Cao
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Bing Liu
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Yan Zhu
- National Engineering and Technology Center for Information Agriculture, Engineering Research Center of Smart Agriculture, Ministry of Education, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, College of Agriculture, Nanjing Agricultural University, Nanjing, Jiangsu, China
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20
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Zhang Z, Chai X, Zhang B, Lu Y, Gao Y, Tariq A, Li X, Zeng F. Potential role of root-associated bacterial communities in adjustments of desert plant physiology to osmotic stress. Plant Physiol Biochem 2023; 204:108124. [PMID: 37897889 DOI: 10.1016/j.plaphy.2023.108124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 09/15/2023] [Accepted: 10/17/2023] [Indexed: 10/30/2023]
Abstract
Plants possess the ability to adapt to osmotic stress by adjusting their physiology and morphology and by cooperating with their root-associated (rhizosphere and endosphere) microbial communities. However, the coordination of host self-regulation with root-associated microorganisms at the community level, especially for desert plants, remains unclear. This study investigated the morphophysiological responses of seedlings from the desert plant Alhagi sparsifolia Shap to osmotic stress, as well as the relationships between these adaptations and their root-associated bacterial communities. The results indicated that osmotic stress contributed to a reduction in height and increased levels of reactive oxygen species (ROS) and malondialdehyde (MDA). In response, A. sparsifolia exhibited a series of morphophysiological adjustments, including increased ratio of root to shoot biomass (R/S) and the number of root tip, enhanced vitality, high levels of peroxidase (POD), ascorbate peroxidase (APX), and glutathione (GSH), as well as osmolytes (proline, soluble protein, and soluble sugar) and modification in phytohormones (abscisic acid (ABA) and jasmonic acid (JA)). Additionally, osmotic stress resulted in alterations in the compositions and co-occurrence patterns of root-associated bacterial communities, but not α-diversity (Chao1). Specifically, the rhizosphere Actinobacteria phylum was significantly increased by osmotic stress. These shifts in root-associated bacterial communities were significantly correlated with the host's adaptation to osmotic stress. Overall, the findings revealed that osmotic stress, in addition to its impacts on plant physiology, resulted in a restructuring of root-associated microbial communities and suggested that the concomitant adjustment in plant microbiota may potentially contribute to the survival of desert plants under extreme environmental stress.
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Affiliation(s)
- Zhihao Zhang
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China.
| | - Xutian Chai
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Bo Zhang
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China
| | - Yan Lu
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China
| | - Yanju Gao
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Akash Tariq
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China
| | - Xiangyi Li
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Fanjiang Zeng
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Cele National Station of Observation and Research for Desert-Grassland Ecosystems, Cele, 848300, China; University of Chinese Academy of Sciences, Beijing, 100049, China.
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21
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Saini S, Sharma P, Singh P, Kumar V, Yadav P, Sharma A. Nitric oxide: An emerging warrior of plant physiology under abiotic stress. Nitric Oxide 2023; 140-141:58-76. [PMID: 37848156 DOI: 10.1016/j.niox.2023.10.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 09/05/2023] [Accepted: 10/09/2023] [Indexed: 10/19/2023]
Abstract
The natural environment of plants comprises a complex set of various abiotic stresses and their capability to react and survive under this anticipated changing climate is highly flexible and involves a series of balanced interactions between signaling molecules where nitric oxide becomes a crucial component. In this article, we focussed on the role of nitric oxide (NO) in various signal transduction pathways of plants and its positive impact on maintaining cellular homeostasis under various abiotic stresses. Besides this, the recent data on interactions of NO with various phytohormones to control physiological and biochemical processes to attain abiotic stress tolerance have also been considered. These crosstalks modulate the plant's defense mechanism and help in alleviating the negative impact of stress. While focusing on the diverse functions of NO, an effort has been made to explore the functions of NO-mediated post-translational modifications, such as the N-end rule pathway, tyrosine nitration, and S-nitrosylation which revealed the exact mechanism and characterization of proteins that modify various metabolic processes in stressed conditions. Considering all of these factors, the present review emphasizes the role of NO and its interlinking with various phytohormones in maintaining developmental processes in plants, specifically under unfavorable environments.
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Affiliation(s)
- Sakshi Saini
- Department of Botany, Maharshi Dayanand University, Rohtak, 124001, Haryana, India
| | - Priyanka Sharma
- Department of Botany, Maharshi Dayanand University, Rohtak, 124001, Haryana, India
| | - Pooja Singh
- Department of Botany, Maharshi Dayanand University, Rohtak, 124001, Haryana, India
| | - Vikram Kumar
- Department of Botany, Maharshi Dayanand University, Rohtak, 124001, Haryana, India
| | - Priya Yadav
- Department of Botany, Zakir Husain Delhi College, University of Delhi, New Delhi, India.
| | - Asha Sharma
- Department of Botany, Maharshi Dayanand University, Rohtak, 124001, Haryana, India.
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22
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Bai Y, Wan X, Lei M, Wang L, Chen T. Research advances in mechanisms of arsenic hyperaccumulation of Pteris vittata: Perspectives from plant physiology, molecular biology, and phylogeny. J Hazard Mater 2023; 460:132463. [PMID: 37690196 DOI: 10.1016/j.jhazmat.2023.132463] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 08/24/2023] [Accepted: 08/31/2023] [Indexed: 09/12/2023]
Abstract
Pteris vittata, as the firstly discovered arsenic (As) hyperaccumulator, has great application value in As-contaminated soil remediation. Currently, the genes involved in As hyperaccumulation in P. vittata have been mined continuously, while they have not been used in practice to enhance phytoremediation efficiency. Aiming to better assist the practice of phytoremediation, this review collects 130 studies to clarify the progress in research into the As hyperaccumulation process in P. vittata from multiple perspectives. Antioxidant defense, rhizosphere activities, vacuolar sequestration, and As efflux are important physiological activities involved in As hyperaccumulation in P. vittata. Among related 19 genes, PHT, TIP, ACR3, ACR2 and HAC family genes play essential roles in arsenate (AsⅤ) transport, arsenite (AsⅢ) transport, vacuole sequestration of AsⅢ, and the reduction of AsⅤ to AsⅢ, respectively. Gene ontology enrichment analysis indicated it is necessary to further explore genes that can bind to related ions, with transport activity, or with function of transmembrane transport. Phylogeny analysis results implied ACR2, HAC and ACR3 family genes with rapid evolutionary rate may be the decisive factors for P. vittata as an As hyperaccumulator. A deeper understanding of the As hyperaccumulation network and key gene components could provide useful tools for further bio-engineered phytoremediation.
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Affiliation(s)
- Yang Bai
- Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; Sino-Danish College, University of Chinese Academy of Sciences, Beijing 100049, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaoming Wan
- Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Mei Lei
- Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lingqing Wang
- Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Tongbin Chen
- Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
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23
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Suhorukova AV, Sobolev DS, Milovskaya IG, Fadeev VS, Goldenkova-Pavlova IV, Tyurin AA. A Molecular Orchestration of Plant Translation under Abiotic Stress. Cells 2023; 12:2445. [PMID: 37887289 PMCID: PMC10605726 DOI: 10.3390/cells12202445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 09/12/2023] [Accepted: 09/26/2023] [Indexed: 10/28/2023] Open
Abstract
The complexities of translational strategies make this stage of implementing genetic information one of the most challenging to comprehend and, simultaneously, perhaps the most engaging. It is evident that this diverse range of strategies results not only from a long evolutionary history, but is also of paramount importance for refining gene expression and metabolic modulation. This notion is particularly accurate for organisms that predominantly exhibit biochemical and physiological reactions with a lack of behavioural ones. Plants are a group of organisms that exhibit such features. Addressing unfavourable environmental conditions plays a pivotal role in plant physiology. This is particularly evident with the changing conditions of global warming and the irrevocable loss or depletion of natural ecosystems. In conceptual terms, the plant response to abiotic stress comprises a set of elaborate and intricate strategies. This is influenced by a range of abiotic factors that cause stressful conditions, and molecular genetic mechanisms that fine-tune metabolic pathways allowing the plant organism to overcome non-standard and non-optimal conditions. This review aims to focus on the current state of the art in the field of translational regulation in plants under abiotic stress conditions. Different regulatory elements and patterns are being assessed chronologically. We deem it important to focus on significant high-performance techniques for studying the genetic information dynamics during the translation phase.
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24
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Zavafer A, Bates H, Mancilla C, Ralph PJ. Phenomics: conceptualization and importance for plant physiology. Trends Plant Sci 2023; 28:1004-1013. [PMID: 37137749 DOI: 10.1016/j.tplants.2023.03.023] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2019] [Revised: 03/21/2023] [Accepted: 03/30/2023] [Indexed: 05/05/2023]
Abstract
Phenomics is a relatively new discipline of biology that has been widely applied in several fields, mainly in crop sciences. We reviewed the concepts used in this discipline (particularly for plants) and found a lack of consensus on what defines a phenomic study. Furthermore, phenomics has been primarily developed around its technical aspects (operationalization), while the conceptual framework of the actual research lags behind. Each research group has given its own interpretation of this 'omic' and thus unwittingly created a 'conceptual controversy'. Addressing this issue is of particular importance, as the experimental designs and concepts of phenomics are so diverse that it is difficult to compare studies. In this opinion article, we evaluate the conceptual framework of phenomics.
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Affiliation(s)
- Alonso Zavafer
- Climate Change Cluster, University of Technology Sydney, Sydney, Australia; Department of Biological Sciences, Brock University, St. Catharines, Ontario, Canada; Department of Engineering, Brock University, St. Catharines, Ontario, Canada.
| | - Harvey Bates
- Climate Change Cluster, University of Technology Sydney, Sydney, Australia
| | - Cristian Mancilla
- Department of Engineering, Brock University, St. Catharines, Ontario, Canada
| | - Peter J Ralph
- Climate Change Cluster, University of Technology Sydney, Sydney, Australia
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25
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Sun X, Sun Y, Cao X, Zhai X, Callaway RM, Wan J, Flory SL, Huang W, Ding J. Trade-offs in non-native plant herbivore defences enhance performance. Ecol Lett 2023; 26:1584-1596. [PMID: 37387416 DOI: 10.1111/ele.14283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2023] [Revised: 05/25/2023] [Accepted: 05/29/2023] [Indexed: 07/01/2023]
Abstract
Non-native plants are typically released from specialist enemies but continue to be attacked by generalists, albeit at lower intensities. This reduced herbivory may lead to less investment in constitutive defences and greater investment in induced defences, potentially reducing defence costs. We compared herbivory on 27 non-native and 59 native species in the field and conducted bioassays and chemical analyses on 12 pairs of non-native and native congeners. Non-natives suffered less damage and had weaker constitutive defences, but stronger induced defences than natives. For non-natives, the strength of constitutive defences was correlated with the intensity of herbivory experienced, whereas induced defences showed the reverse. Investment in induced defences correlated positively with growth, suggesting a novel mechanism for the evolution of increased competitive ability. To our knowledge, these are the first linkages reported among trade-offs in plant defences related to the intensity of herbivory, allocation to constitutive versus induced defences, and growth.
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Affiliation(s)
- Xiao Sun
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, China
| | - Yumei Sun
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, China
| | - Xueyao Cao
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, China
| | - Xincong Zhai
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, China
| | - Ragan M Callaway
- Division of Biological Sciences, University of Montana, Missoula, Montana, USA
| | - Jinlong Wan
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
| | - S Luke Flory
- Agronomy Department, University of Florida, Gainesville, Florida, USA
| | - Wei Huang
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China
| | - Jianqing Ding
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, China
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26
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Abstract
Polar auxin transport is a quintessential feature of higher plant physiology and it has been known for many years that some of the primary drivers of polar auxin transport are the PIN-formed (PIN) auxin efflux proteins. Formative research established many key biochemical features of the transport system and discovered inhibitors such as 1-naphthylphthalamic acid (NPA), but the mechanism of action of PINs has remained elusive. This changed in 2022 with the publication of high-resolution structures of the membrane-spanning domains of three PIN proteins. The atomic structures and associated activity assays reveal that PINs use an elevator mechanism to transport auxin anions out of the cell. NPA was shown to be a competitive inhibitor that traps PINs in their inward-open conformation. The secrets of the hydrophilic cytoplasmic loop of PIN proteins remain to be discovered.
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Affiliation(s)
- Chitra Joshi
- School of Life Sciences, University of Warwick, Coventry CV4 7AL, UK
- Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK
| | - Richard Napier
- School of Life Sciences, University of Warwick, Coventry CV4 7AL, UK
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27
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Transitions in development - an interview with Momoko Ikeuchi. Development 2023; 150:dev202176. [PMID: 37578271 DOI: 10.1242/dev.202176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/15/2023]
Abstract
Momoko Ikeuchi is an Associate Professor at Nara Institute of Science and Technology (NAIST) in the Division of Biological Science. Her lab studies plant regeneration, with a focus on the developmental mechanisms underlying callus formation and shoot regeneration. We spoke to Momoko over a video call to learn more about her career, her path to independence, and her love for the rich diversity of plants.
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28
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Keetz LT, Lieungh E, Karimi-Asli K, Geange SR, Gelati E, Tang H, Yilmaz YA, Aas KS, Althuizen IHJ, Bryn A, Falk S, Fisher R, Fouilloux A, Horvath P, Indrehus S, Lee H, Lombardozzi D, Parmentier FJW, Pirk N, Vandvik V, Vollsnes AV, Skarpaas O, Stordal F, Tallaksen LM. Climate-ecosystem modelling made easy: The Land Sites Platform. Glob Chang Biol 2023; 29:4440-4452. [PMID: 37303068 DOI: 10.1111/gcb.16808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Accepted: 05/03/2023] [Indexed: 06/13/2023]
Abstract
Dynamic Global Vegetation Models (DGVMs) provide a state-of-the-art process-based approach to study the complex interplay between vegetation and its physical environment. For example, they help to predict how terrestrial plants interact with climate, soils, disturbance and competition for resources. We argue that there is untapped potential for the use of DGVMs in ecological and ecophysiological research. One fundamental barrier to realize this potential is that many researchers with relevant expertize (ecology, plant physiology, soil science, etc.) lack access to the technical resources or awareness of the research potential of DGVMs. Here we present the Land Sites Platform (LSP): new software that facilitates single-site simulations with the Functionally Assembled Terrestrial Ecosystem Simulator, an advanced DGVM coupled with the Community Land Model. The LSP includes a Graphical User Interface and an Application Programming Interface, which improve the user experience and lower the technical thresholds for installing these model architectures and setting up model experiments. The software is distributed via version-controlled containers; researchers and students can run simulations directly on their personal computers or servers, with relatively low hardware requirements, and on different operating systems. Version 1.0 of the LSP supports site-level simulations. We provide input data for 20 established geo-ecological observation sites in Norway and workflows to add generic sites from public global datasets. The LSP makes standard model experiments with default data easily achievable (e.g., for educational or introductory purposes) while retaining flexibility for more advanced scientific uses. We further provide tools to visualize the model input and output, including simple examples to relate predictions to local observations. The LSP improves access to land surface and DGVM modelling as a building block of community cyberinfrastructure that may inspire new avenues for mechanistic ecosystem research across disciplines.
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Affiliation(s)
- Lasse T Keetz
- Department of Geosciences, University of Oslo, Oslo, Norway
| | - Eva Lieungh
- Natural History Museum, University of Oslo, Oslo, Norway
| | | | - Sonya R Geange
- Department of Biological Sciences, University of Bergen, Bergen, Norway
| | | | - Hui Tang
- Department of Geosciences, University of Oslo, Oslo, Norway
- Natural History Museum, University of Oslo, Oslo, Norway
- Finnish Meteorological Institute, Climate System Research, Helsinki, Finland
| | - Yeliz A Yilmaz
- Department of Geosciences, University of Oslo, Oslo, Norway
- Centre for Biogeochemistry in the Anthropocene, University of Oslo, Oslo, Norway
| | - Kjetil S Aas
- Department of Geosciences, University of Oslo, Oslo, Norway
- CICERO Center for International Climate Research, Oslo, Norway
| | - Inge H J Althuizen
- Division of Climate and Environment, NORCE Norwegian Research Centre, Bergen, Norway
| | - Anders Bryn
- Natural History Museum, University of Oslo, Oslo, Norway
- Centre for Biogeochemistry in the Anthropocene, University of Oslo, Oslo, Norway
| | - Stefanie Falk
- Department of Geography, Ludwig Maximilian University of Munich, Munich, Germany
| | - Rosie Fisher
- CICERO Center for International Climate Research, Oslo, Norway
- Climate and Global Dynamics Laboratory, National Center for Atmospheric Research, Boulder, Colorado, USA
| | | | - Peter Horvath
- Natural History Museum, University of Oslo, Oslo, Norway
| | | | - Hanna Lee
- Division of Climate and Environment, NORCE Norwegian Research Centre, Bergen, Norway
- Department of Biology, Norwegian University of Science and Technology NTNU, Trondheim, Norway
| | - Danica Lombardozzi
- Climate and Global Dynamics Laboratory, National Center for Atmospheric Research, Boulder, Colorado, USA
| | - Frans-Jan W Parmentier
- Department of Geosciences, University of Oslo, Oslo, Norway
- Centre for Biogeochemistry in the Anthropocene, University of Oslo, Oslo, Norway
- Department of Physical Geography and Ecosystem Science, Lund University, Lund, Sweden
| | - Norbert Pirk
- Department of Geosciences, University of Oslo, Oslo, Norway
| | - Vigdis Vandvik
- Department of Biological Sciences, University of Bergen, Bergen, Norway
- Bjerknes Centre for Climate Research, University of Bergen, Bergen, Norway
| | - Ane V Vollsnes
- Centre for Biogeochemistry in the Anthropocene, University of Oslo, Oslo, Norway
- Department of Biosciences, University of Oslo, Oslo, Norway
| | - Olav Skarpaas
- Natural History Museum, University of Oslo, Oslo, Norway
| | - Frode Stordal
- Department of Geosciences, University of Oslo, Oslo, Norway
- Centre for Biogeochemistry in the Anthropocene, University of Oslo, Oslo, Norway
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29
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Milner KV, French K, Krix DW, Valenzuela SM, Leigh A. The effects of spring versus summer heat events on two arid zone plant species under field conditions. Funct Plant Biol 2023; 50:455-469. [PMID: 37081720 DOI: 10.1071/fp22135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 03/15/2023] [Indexed: 05/03/2023]
Abstract
Heatwaves are increasingly occurring out-of-season, which may affect plants not primed for the event. Further, heat stress often coincides with water and/or nutrient stress, impairing short-term physiological function and potentially causing downstream effects on reproductive fitness. We investigated the response of water-stressed arid-zone Solanum oligacanthum and Solanum orbiculatum to spring vs summer heat stress under differing nutrient conditions. Heat stress events were imposed in open-topped chambers under in situ desert conditions. To assess short-term impacts, we measured leaf photosystem responses (F v /F m ) and membrane stability; long-term effects were compared via biomass allocation, visible damage, flowering and fruiting. Plants generally fared more poorly following summer than spring heat stress, with the exception of F v /F m . Summer heat stress caused greater membrane damage, reduced growth and survival compared with spring. Nutrient availability had a strong influence on downstream effects of heat stress, including species-specific outcomes for reproductive fitness. Overall, high temperatures during spring posed a lower threat to fitness than in severe arid summer conditions of high temperature and low water availability, which were more detrimental to plants in both the short and longer term. Our study highlights the importance of considering ecologically relevant, multiple-stressor events to understand different species responses to extreme heat.
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Affiliation(s)
- K V Milner
- School of Life Sciences, University of Technology Sydney, Ultimo, NSW 2007, Australia
| | - K French
- Centre for Sustainable Ecosystem Solutions, School of Earth, Atmospherics and Life Sciences, University of Wollongong, Wollongong, NSW 2522, Australia
| | - D W Krix
- School of Life Sciences, University of Technology Sydney, Ultimo, NSW 2007, Australia
| | - S M Valenzuela
- School of Life Sciences, University of Technology Sydney, Ultimo, NSW 2007, Australia
| | - A Leigh
- School of Life Sciences, University of Technology Sydney, Ultimo, NSW 2007, Australia
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30
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Guo Z, Gao Y, Yuan X, Yuan M, Huang L, Wang S, Liu C, Duan C. Effects of Heavy Metals on Stomata in Plants: A Review. Int J Mol Sci 2023; 24:9302. [PMID: 37298252 PMCID: PMC10252879 DOI: 10.3390/ijms24119302] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Revised: 05/18/2023] [Accepted: 05/23/2023] [Indexed: 06/12/2023] Open
Abstract
Stomata are one of the important structures for plants to alleviate metal stress and improve plant resistance. Therefore, a study on the effects and mechanisms of heavy metal toxicity to stomata is indispensable in clarifying the adaptation mechanism of plants to heavy metals. With the rapid pace of industrialization and urbanization, heavy metal pollution has been an environmental issue of global concern. Stomata, a special physiological structure of plants, play an important role in maintaining plant physiological and ecological functions. Recent studies have shown that heavy metals can affect the structure and function of stomata, leading to changes in plant physiology and ecology. However, although the scientific community has accumulated some data on the effects of heavy metals on plant stomata, the systematic understanding of the effects of heavy metals on plant stomata remains limited. Therefore, in this review, we present the sources and migration pathways of heavy metals in plant stomata, analyze systematically the physiological and ecological responses of stomata on heavy metal exposure, and summarize the current mechanisms of heavy metal toxicity on stomata. Finally, the future research perspectives of the effects of heavy metals on plant stomata are identified. This paper can serve as a reference for the ecological assessment of heavy metals and the protection of plant resources.
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Affiliation(s)
- Zhaolai Guo
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Yuhan Gao
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Xinqi Yuan
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Mengxiang Yuan
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Lv Huang
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Sichen Wang
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Chang’e Liu
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
| | - Changqun Duan
- School of Ecology and Environmental Science, Yunnan University, Kunming 650091, China; (Z.G.); (Y.G.); (X.Y.); (M.Y.); (L.H.); (S.W.); (C.L.)
- Yunnan Key Laboratory of Plateau Ecology and Degraded Environment Restoration, Kunming 650000, China
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31
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Dickman LT, Jonko AK, Linn RR, Altintas I, Atchley AL, Bär A, Collins AD, Dupuy J, Gallagher MR, Hiers JK, Hoffman CM, Hood SM, Hurteau MD, Jolly WM, Josephson A, Loudermilk EL, Ma W, Michaletz ST, Nolan RH, O'Brien JJ, Parsons RA, Partelli‐Feltrin R, Pimont F, Resco de Dios V, Restaino J, Robbins ZJ, Sartor KA, Schultz‐Fellenz E, Serbin SP, Sevanto S, Shuman JK, Sieg CH, Skowronski NS, Weise DR, Wright M, Xu C, Yebra M, Younes N. Integrating plant physiology into simulation of fire behavior and effects. New Phytol 2023; 238:952-970. [PMID: 36694296 PMCID: PMC10952334 DOI: 10.1111/nph.18770] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2022] [Accepted: 12/20/2022] [Indexed: 06/17/2023]
Abstract
Wildfires are a global crisis, but current fire models fail to capture vegetation response to changing climate. With drought and elevated temperature increasing the importance of vegetation dynamics to fire behavior, and the advent of next generation models capable of capturing increasingly complex physical processes, we provide a renewed focus on representation of woody vegetation in fire models. Currently, the most advanced representations of fire behavior and biophysical fire effects are found in distinct classes of fine-scale models and do not capture variation in live fuel (i.e. living plant) properties. We demonstrate that plant water and carbon dynamics, which influence combustion and heat transfer into the plant and often dictate plant survival, provide the mechanistic linkage between fire behavior and effects. Our conceptual framework linking remotely sensed estimates of plant water and carbon to fine-scale models of fire behavior and effects could be a critical first step toward improving the fidelity of the coarse scale models that are now relied upon for global fire forecasting. This process-based approach will be essential to capturing the influence of physiological responses to drought and warming on live fuel conditions, strengthening the science needed to guide fire managers in an uncertain future.
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Affiliation(s)
- L. Turin Dickman
- Earth & Environmental Sciences DivisionLos Alamos National LaboratoryLos AlamosNM87545USA
| | - Alexandra K. Jonko
- Earth & Environmental Sciences DivisionLos Alamos National LaboratoryLos AlamosNM87545USA
| | - Rodman R. Linn
- Earth & Environmental Sciences DivisionLos Alamos National LaboratoryLos AlamosNM87545USA
| | - Ilkay Altintas
- San Diego Supercomputer Center and Halicioglu Data Science InstituteUniversity of California San DiegoLa JollaCA92093USA
| | - Adam L. Atchley
- Earth & Environmental Sciences DivisionLos Alamos National LaboratoryLos AlamosNM87545USA
| | - Andreas Bär
- Department of BotanyUniversity of Innsbruck6020InnsbruckAustria
| | - Adam D. Collins
- Earth & Environmental Sciences DivisionLos Alamos National LaboratoryLos AlamosNM87545USA
| | - Jean‐Luc Dupuy
- Ecologie des Forêts Méditerranéennes (URFM)INRAe84914AvignonFrance
| | | | | | - Chad M. Hoffman
- Department of Forest and Rangeland StewardshipColorado State UniversityFort CollinsCO80523USA
| | - Sharon M. Hood
- Rocky Mountain Research StationUSDA Forest ServiceMissoulaMT59801USA
| | | | - W. Matt Jolly
- Rocky Mountain Research StationUSDA Forest ServiceMissoulaMT59801USA
| | - Alexander Josephson
- Earth & Environmental Sciences DivisionLos Alamos National LaboratoryLos AlamosNM87545USA
| | | | - Wu Ma
- Earth & Environmental Sciences DivisionLos Alamos National LaboratoryLos AlamosNM87545USA
| | - Sean T. Michaletz
- Department of Botany and Biodiversity Research CentreThe University of British ColumbiaVancouverBCV6T 1Z4Canada
| | - Rachael H. Nolan
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityPenrithNSW2753Australia
- NSW Bushfire Risk Management Research HubWollongongNSW2522Australia
| | | | | | - Raquel Partelli‐Feltrin
- Department of Botany and Biodiversity Research CentreThe University of British ColumbiaVancouverBCV6T 1Z4Canada
| | - François Pimont
- Ecologie des Forêts Méditerranéennes (URFM)INRAe84914AvignonFrance
| | - Víctor Resco de Dios
- School of Life Sciences and EngineeringSouthwest University of Science and TechnologyMianyang621010China
- Department of Crop and Forest Sciences and JRU CTFC‐AGROTECNIOUniversitat de LleidaLleida25198Spain
| | - Joseph Restaino
- Fire and Resource Assessment ProgramCalifornia Department of Forestry and Fire ProtectionSouth Lake TahoeCA96155USA
| | - Zachary J. Robbins
- Earth & Environmental Sciences DivisionLos Alamos National LaboratoryLos AlamosNM87545USA
| | - Karla A. Sartor
- Environmental Protection and Compliance DivisionLos Alamos National LaboratoryLos AlamosNM87545USA
| | - Emily Schultz‐Fellenz
- Earth & Environmental Sciences DivisionLos Alamos National LaboratoryLos AlamosNM87545USA
| | - Shawn P. Serbin
- Environmental and Climate Sciences DepartmentBrookhaven National LaboratoryUptonNY11973USA
| | - Sanna Sevanto
- Earth & Environmental Sciences DivisionLos Alamos National LaboratoryLos AlamosNM87545USA
| | - Jacquelyn K. Shuman
- Climate and Global Dynamics Laboratory, Terrestrial Sciences SectionNational Center for Atmospheric ResearchBoulderCO80305USA
| | - Carolyn H. Sieg
- Rocky Mountain Research StationUSDA Forest ServiceFlagstaffAZ86001USA
| | | | - David R. Weise
- Pacific Southwest Research StationUSDA Forest ServiceRiversideCA92507USA
| | - Molly Wright
- Cibola National ForestUSDA Forest ServiceAlbuquerqueNM87113USA
| | - Chonggang Xu
- Earth & Environmental Sciences DivisionLos Alamos National LaboratoryLos AlamosNM87545USA
| | - Marta Yebra
- Fenner School of Environment and SocietyAustralian National UniversityCanberraACT2601Australia
- School of EngineeringAustralian National UniversityCanberraACT2601Australia
| | - Nicolas Younes
- Fenner School of Environment and SocietyAustralian National UniversityCanberraACT2601Australia
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Lee G, Hossain O, Jamalzadegan S, Liu Y, Wang H, Saville AC, Shymanovich T, Paul R, Rotenberg D, Whitfield AE, Ristaino JB, Zhu Y, Wei Q. Abaxial leaf surface-mounted multimodal wearable sensor for continuous plant physiology monitoring. Sci Adv 2023; 9:eade2232. [PMID: 37043563 PMCID: PMC10096584 DOI: 10.1126/sciadv.ade2232] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 03/16/2023] [Indexed: 06/19/2023]
Abstract
Wearable plant sensors hold tremendous potential for smart agriculture. We report a lower leaf surface-attached multimodal wearable sensor for continuous monitoring of plant physiology by tracking both biochemical and biophysical signals of the plant and its microenvironment. Sensors for detecting volatile organic compounds (VOCs), temperature, and humidity are integrated into a single platform. The abaxial leaf attachment position is selected on the basis of the stomata density to improve the sensor signal strength. This versatile platform enables various stress monitoring applications, ranging from tracking plant water loss to early detection of plant pathogens. A machine learning model was also developed to analyze multichannel sensor data for quantitative detection of tomato spotted wilt virus as early as 4 days after inoculation. The model also evaluates different sensor combinations for early disease detection and predicts that minimally three sensors are required including the VOC sensors.
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Affiliation(s)
- Giwon Lee
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC 27695, USA
- Department of Mechanical and Aerospace Engineering, North Carolina State University, Raleigh, NC 27695, USA
- Department of Chemical Engineering, Kwangwoon University, Seoul 01897, Republic of Korea
| | - Oindrila Hossain
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC 27695, USA
| | - Sina Jamalzadegan
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC 27695, USA
| | - Yuxuan Liu
- Department of Mechanical and Aerospace Engineering, North Carolina State University, Raleigh, NC 27695, USA
| | - Hongyu Wang
- Department of Mechanical and Aerospace Engineering, North Carolina State University, Raleigh, NC 27695, USA
| | - Amanda C. Saville
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, USA
| | - Tatsiana Shymanovich
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, USA
| | - Rajesh Paul
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC 27695, USA
| | - Dorith Rotenberg
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, USA
- Emerging Plant Disease and Global Food Security Cluster, North Carolina State University, Raleigh, NC 27695, USA
| | - Anna E. Whitfield
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, USA
- Emerging Plant Disease and Global Food Security Cluster, North Carolina State University, Raleigh, NC 27695, USA
| | - Jean B. Ristaino
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, USA
- Emerging Plant Disease and Global Food Security Cluster, North Carolina State University, Raleigh, NC 27695, USA
| | - Yong Zhu
- Department of Mechanical and Aerospace Engineering, North Carolina State University, Raleigh, NC 27695, USA
| | - Qingshan Wei
- Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC 27695, USA
- Emerging Plant Disease and Global Food Security Cluster, North Carolina State University, Raleigh, NC 27695, USA
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Marris E. Stressed plants 'cry' - and some animals can probably hear them. Nature 2023; 616:229. [PMID: 36997712 DOI: 10.1038/d41586-023-00890-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/01/2023]
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Buss E, Aust T, Wahby M, Rabbel TL, Kernbach S, Hamann H. Stimulus classification with electrical potential and impedance of living plants: comparing discriminant analysis and deep-learning methods. Bioinspir Biomim 2023; 18:025003. [PMID: 36758242 DOI: 10.1088/1748-3190/acbad2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 02/09/2023] [Indexed: 06/18/2023]
Abstract
The physiology of living organisms, such as living plants, is complex and particularly difficult to understand on a macroscopic, organism-holistic level. Among the many options for studying plant physiology, electrical potential and tissue impedance are arguably simple measurement techniques that can be used to gather plant-level information. Despite the many possible uses, our research is exclusively driven by the idea of phytosensing, that is, interpreting living plants' signals to gather information about surrounding environmental conditions. As ready-to-use plant-level physiological models are not available, we consider the plant as a blackbox and apply statistics and machine learning to automatically interpret measured signals. In simple plant experiments, we exposeZamioculcas zamiifoliaandSolanum lycopersicum(tomato) to four different stimuli: wind, heat, red light and blue light. We measure electrical potential and tissue impedance signals. Given these signals, we evaluate a large variety of methods from statistical discriminant analysis and from deep learning, for the classification problem of determining the stimulus to which the plant was exposed. We identify a set of methods that successfully classify stimuli with good accuracy, without a clear winner. The statistical approach is competitive, partially depending on data availability for the machine learning approach. Our extensive results show the feasibility of the blackbox approach and can be used in future research to select appropriate classifier techniques for a given use case. In our own future research, we will exploit these methods to derive a phytosensing approach to monitoring air pollution in urban areas.
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Affiliation(s)
- Eduard Buss
- Institute of Computer Engineering, University of Lübeck, Lübeck, Germany
- Department of Computer and Information Science, University of Konstanz, Konstanz, Germany
| | - Till Aust
- Institute of Computer Engineering, University of Lübeck, Lübeck, Germany
- Department of Computer and Information Science, University of Konstanz, Konstanz, Germany
| | - Mostafa Wahby
- Institute of Computer Engineering, University of Lübeck, Lübeck, Germany
| | - Tim-Lucas Rabbel
- Institute of Computer Engineering, University of Lübeck, Lübeck, Germany
| | - Serge Kernbach
- CYBRES GmbH, Research Center of Advanced Robotics and Environmental Science, Stuttgart, Germany
| | - Heiko Hamann
- Department of Computer and Information Science, University of Konstanz, Konstanz, Germany
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Xie LJ, Wang JH, Liu HS, Yuan LB, Tan YF, Tan WJ, Zhou Y, Chen QF, Qi H, Li JF, Chen YQ, Qiu RL, Chen MX, Xiao S. MYB30 integrates light signals with antioxidant biosynthesis to regulate plant responses during postsubmergence recovery. New Phytol 2023; 237:2238-2254. [PMID: 36513604 DOI: 10.1111/nph.18674] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 11/29/2022] [Indexed: 06/17/2023]
Abstract
Submergence is an abiotic stress that limits agricultural production world-wide. Plants sense oxygen levels during submergence and postsubmergence reoxygenation and modulate their responses. Increasing evidence suggests that completely submerged plants are often exposed to low-light stress, owing to the depth and turbidity of the surrounding water; however, how light availability affects submergence tolerance remains largely unknown. Here, we showed that Arabidopsis thaliana MYB DOMAIN PROTEIN30 (MYB30) is an important transcription factor that integrates light signaling and postsubmergence stress responses. MYB DOMAIN PROTEIN30 protein abundance decreased upon submergence and accumulated during reoxygenation. Under submergence conditions, CONSTITUTIVE PHOTOMORPHOGENIC1 (COP1), a central regulator of light signaling, caused the ubiquitination and degradation of MYB30. In response to desubmergence, however, light-induced MYB30 interacted with MYC2, a master transcription factor involved in jasmonate signaling, and activated the expression of the VITAMIN C DEFECTIVE1 (VTC1) and GLUTATHIONE SYNTHETASE1 (GSH1) gene families to enhance antioxidant biosynthesis. Consistent with this, the myb30 knockout mutant showed increased sensitivity to submergence, which was partially rescued by overexpression of VTC1 or GSH1. Thus, our findings uncover the mechanism by which the COP1-MYB30 module integrates light signals with cellular oxidative homeostasis to coordinate plant responses to postsubmergence stress.
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Affiliation(s)
- Li-Juan Xie
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
- Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Jian-Hong Wang
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
| | - Hui-Shan Liu
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
| | - Li-Bing Yuan
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
| | - Yi-Fang Tan
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
| | - Wei-Juan Tan
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
| | - Ying Zhou
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
| | - Qin-Fang Chen
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
| | - Hua Qi
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
- Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Jian-Feng Li
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
| | - Yue-Qin Chen
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
| | - Rong-Liang Qiu
- Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Mo-Xian Chen
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
| | - Shi Xiao
- Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, China
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Devi R, Verma R, Dhalaria R, Kumar A, Kumar D, Puri S, Thakur M, Chauhan S, Chauhan PP, Nepovimova E, Kuca K. A systematic review on endophytic fungi and its role in the commercial applications. Planta 2023; 257:70. [PMID: 36856911 DOI: 10.1007/s00425-023-04087-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 02/02/2023] [Indexed: 06/18/2023]
Abstract
MAIN CONCLUSION EF have been explored for its beneficial impact on environment and for its commercial applications. It has proved its worth in these sectors and showed an impact on biological properties of plants by producing various bioactive molecules and enzymes. Endophytes are plant mutualists that live asymptomatically within plant tissues and exist in almost every plant species. Endophytic fungi benefit from the host plant nutrition, and the host plant gains improved competitive abilities and tolerance against pathogens, herbivores, and various abiotic stresses. Endophytic fungi are one of the most inventive classes which produce secondary metabolites and play a crucial role in human health and other biotic aspects. This review is focused on systematic study on the biodiversity of endophytic fungi in plants, and their role in enhancing various properties of plants such as antimicrobial, antimycobacterial, antioxidant, cytotoxic, anticancer, and biological activity of secondary metabolites produced by various fungal endophytes in host plants reported from 1994 to 2021. This review emphasizes the endophytic fungal population shaped by host genotype, environment, and endophytic fungi genotype affecting host plant. The impact of endophytic fungi has been discussed in detail which influences the commercial properties of plants. Endophytes also have an influence on plant productivity by increasing parameters such as nutrient recycling and phytostimulation. Studies focusing on mechanisms that regulate attenuation of secondary metabolite production in EF would provide much needed impetus on ensuring continued production of bioactive molecules from a indubitable source. If this knowledge is further extensively explored regarding fungal endophytes in plants for production of potential phytochemicals, then it will help in exploring a keen area of interest for pharmacognosy.
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Affiliation(s)
- Reema Devi
- School of Biological and Environmental Sciences, Shoolini University of Biotechnology and Management Sciences, Solan, H.P., 173229, India
| | - Rachna Verma
- School of Biological and Environmental Sciences, Shoolini University of Biotechnology and Management Sciences, Solan, H.P., 173229, India.
| | - Rajni Dhalaria
- School of Biological and Environmental Sciences, Shoolini University of Biotechnology and Management Sciences, Solan, H.P., 173229, India
| | - Ashwani Kumar
- Patanjali Herbal Research Department, Patanjali Research Institute, Haridwar, Uttarakhand, 249405, India
| | - Dinesh Kumar
- School of Bioengineering and Food Technology, Shoolini University of Biotechnology and Business Management, Solan, H.P., 173229, India
| | - Sunil Puri
- School of Biological and Environmental Sciences, Shoolini University of Biotechnology and Management Sciences, Solan, H.P., 173229, India
| | - Monika Thakur
- School of Biological and Environmental Sciences, Shoolini University of Biotechnology and Management Sciences, Solan, H.P., 173229, India
| | - Saurav Chauhan
- School of Biological and Environmental Sciences, Shoolini University of Biotechnology and Management Sciences, Solan, H.P., 173229, India
| | - Prem Parkash Chauhan
- Lal Bahadur Shastri Government Degree College, Saraswati Nagar, Shimla, H.P., 171206, India
| | - Eugenie Nepovimova
- Department of Chemistry, Faculty of Science, University of Hradec Kralove, 50003, Hradec Kralove, Czech Republic
| | - Kamil Kuca
- Department of Chemistry, Faculty of Science, University of Hradec Kralove, 50003, Hradec Kralove, Czech Republic.
- Biomedical Research Center, University Hospital Hradec Kralove, 50005, Hradec Kralove, Czech Republic.
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The people behind the papers - Junghyun Kim and Sibum Sung. Development 2023; 150:dev201706. [PMID: 36866801 DOI: 10.1242/dev.201706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/04/2023]
Abstract
Plants respond to changes in temperature using complex mechanisms, with decreases in temperature inducing vernalisation and high temperatures causing thermo-morphogenesis. A new paper in Development investigates how VIL1, a PHD finger-containing protein, functions in plants during thermo-morphogenesis. To find out more about this research, we spoke with co-first author of the study, Junghyun Kim, and corresponding author Sibum Sung (Associate Professor of Molecular Bioscience at the University of Texas in Austin, USA). Co-first author Yogendra Bordiya was not available to interview, having now moved to a different sector.
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38
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de Melo HC. Plants detect and respond to sounds. Planta 2023; 257:55. [PMID: 36790549 DOI: 10.1007/s00425-023-04088-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2022] [Accepted: 02/02/2023] [Indexed: 06/18/2023]
Abstract
Specific sound patterns can affect plant development. Plants are responsive to environmental stimuli such as sound. However, little is known about their sensory apparatus, mechanisms, and signaling pathways triggered by these stimuli. Thus, it is important to understand the effect of sounds on plants and their technological potential. This review addresses the effects of sounds on plants, the sensory elements inherent to sound detection by the cell, as well as the triggering of signaling pathways that culminate in plant responses. The importance of sound standardization for the study of phytoacoustics is demonstrated. Studies on the sounds emitted or reflected by plants, acoustic stress in plants, and recognition of some sound patterns by plants are also explored.
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Affiliation(s)
- Hyrandir Cabral de Melo
- Laboratório de Fisiologia Vegetal, Departamento de Botânica, Universidade Federal de Goiás, Instituto de Ciências Biológicas. Avenida Esperança, S/N Campus Samambaia, Goiânia, GO, 74690-900, Brazil.
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Skelton RP, West AG, Buttner D, Dawson TE. Consistent responses to moisture stress despite diverse growth forms within mountain fynbos communities. Oecologia 2023; 201:323-339. [PMID: 36692692 PMCID: PMC9944370 DOI: 10.1007/s00442-023-05326-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2022] [Accepted: 01/17/2023] [Indexed: 01/25/2023]
Abstract
Understanding climate change impacts on the Cape Floristic Region requires improved knowledge of plant physiological responses to the environment. Studies examining physiological responses of mountain fynbos have consisted of campaign-based measurements, capturing snapshots of plant water relations and photosynthesis. We examine conclusions drawn from prior studies by tracking in situ physiological responses of three species, representing dominant growth forms (proteoid, ericoid, restioid), over 2 years using miniature continuous sap flow technology, long-term observations of leaf/culm water potential and gas exchange, and xylem vulnerability to embolism. We observed considerable inter-specific variation in the timing and extent of seasonal declines in productivity. Shallow-rooted Erica monsoniana exhibited steep within-season declines in sap flow and water potentials, and pronounced inter-annual variability in total daily sap flux (Js). Protea repens showed steady reductions in Js across both years, despite deeper roots and less negative water potentials. Cannomois congesta-a shallow-rooted restioid-was least negatively impacted. Following rehydrating rain at the end of summer, gas exchange recovery was lower in the drier year compared with the normal year, but did not differ between species. Loss of function in the drier year was partially accounted for by loss of xylem transport capacity in Erica and Cannomois, but not Protea. Hitherto unseen water use patterns, including inter-annual variability of gas exchange associated with contrasting water uptake properties, reveal that species use different mechanisms to cope with summer dry periods. Revealing physiological responses of key growth forms enhances predictions of plant function within mountain fynbos under future conditions.
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Affiliation(s)
| | - Adam G West
- Department of Biological Sciences, University of Cape Town, Cape Town, South Africa
| | - Daniel Buttner
- Department of Botany, Nelson Mandela University, Gqeberha, South Africa
| | - Todd E Dawson
- Department of Integrative Biology, University of California, Berkeley, Berkeley, USA
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40
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Heckman RW, Rueda A, Bonnette JE, Aspinwall MJ, Khasanova A, Hawkes CV, Juenger TE, Fay PA. Legacies of precipitation influence primary production in Panicum virgatum. Oecologia 2023; 201:269-278. [PMID: 36372830 DOI: 10.1007/s00442-022-05281-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2022] [Accepted: 10/31/2022] [Indexed: 11/15/2022]
Abstract
Precipitation is a key driver of primary production worldwide, but primary production does not always track year-to-year variation in precipitation linearly. Instead, plant responses to changes in precipitation may exhibit time lags, or legacies of past precipitation. Legacies can be driven by multiple mechanisms, including persistent changes in plant physiological and morphological traits and changes to the physical environment, such as plant access to soil water. We used three precipitation manipulation experiments in central Texas, USA to evaluate the magnitude, duration, and potential mechanisms driving precipitation legacies on aboveground primary production of the perennial C4 grass, Panicum virgatum. Specifically, we performed a rainout shelter study, where eight genotypes grew under different precipitation regimes; a transplant study, where plants that had previously grown in a rainout shelter under different precipitation regimes were moved to a common environment; and a mesocosm study, where the effect of swapping precipitation regime was examined with a single genotype. Across these experiments, plants previously grown under wet conditions generally performed better than expected when exposed to drought. Panicum virgatum exhibited stronger productivity legacies of past wet years on current-year responses to drought than of past dry years on current-year responses to wet conditions. Additionally, previous year tiller counts, a proxy for meristem availability, were important in determining legacy effects on aboveground production. As climate changes and precipitation extremes-both dry and wet-become more common, these results suggest that populations of P. virgatum may become less resilient.
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Affiliation(s)
- Robert W Heckman
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA.
- USDA Forest Service, Rocky Mountain Research Station, Cedar City, UT, 84721, USA.
| | - Austin Rueda
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA
- PathogenDx, Tucson, AZ, 85714, USA
| | - Jason E Bonnette
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA
| | - Michael J Aspinwall
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA
- College of Forestry and Wildlife Sciences, Auburn University, Auburn, AL, 36849, USA
| | - Albina Khasanova
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA
- Lawrence Berkeley National Laboratory, Berkeley, CA, 74720, USA
| | - Christine V Hawkes
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA
| | - Thomas E Juenger
- Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA
| | - Philip A Fay
- Grassland Soil and Water Research Lab, USDA-ARS, Temple, TX, 76502, USA
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Jiang Z, Wang M, Nicolas M, Ogé L, Pérez-Garcia MD, Crespel L, Li G, Ding Y, Le Gourrierec J, Grappin P, Sakr S. Glucose-6-Phosphate Dehydrogenases: The Hidden Players of Plant Physiology. Int J Mol Sci 2022; 23:ijms232416128. [PMID: 36555768 PMCID: PMC9785579 DOI: 10.3390/ijms232416128] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 12/12/2022] [Accepted: 12/12/2022] [Indexed: 12/23/2022] Open
Abstract
Glucose-6-phosphate dehydrogenase (G6PDH) catalyzes a metabolic hub between glycolysis and the pentose phosphate pathway (PPP), which is the oxidation of glucose-6-phosphate (G6P) to 6-phosphogluconolactone concomitantly with the production of nicotinamide adenine dinucleotide phosphate (NADPH), a reducing power. It is considered to be the rate-limiting step that governs carbon flow through the oxidative pentose phosphate pathway (OPPP). The OPPP is the main supplier of reductant (NADPH) for several "reducing" biosynthetic reactions. Although it is involved in multiple physiological processes, current knowledge on its exact role and regulation is still piecemeal. The present review provides a concise and comprehensive picture of the diversity of plant G6PDHs and their role in seed germination, nitrogen assimilation, plant branching, and plant response to abiotic stress. This work will help define future research directions to improve our knowledge of G6PDHs in plant physiology and to integrate this hidden player in plant performance.
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Affiliation(s)
- Zhengrong Jiang
- Institut Agro, University of Angers, INRAE, IRHS, SFR QUASAV, 49000 Angers, France
- College of Agronomy, Nanjing Agricultural University, Nanjing 210095, China
| | - Ming Wang
- Dryland-Technology Key Laboratory of Shandong Province, College of Agronomy, Qingdao Agricultural University, Qingdao 266109, China
| | - Michael Nicolas
- Plant Molecular Genetics Department, Centro Nacional de Biotecnología-CSIC, Campus Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Laurent Ogé
- Institut Agro, University of Angers, INRAE, IRHS, SFR QUASAV, 49000 Angers, France
| | | | - Laurent Crespel
- Institut Agro, University of Angers, INRAE, IRHS, SFR QUASAV, 49000 Angers, France
| | - Ganghua Li
- College of Agronomy, Nanjing Agricultural University, Nanjing 210095, China
| | - Yanfeng Ding
- College of Agronomy, Nanjing Agricultural University, Nanjing 210095, China
| | - José Le Gourrierec
- Institut Agro, University of Angers, INRAE, IRHS, SFR QUASAV, 49000 Angers, France
| | - Philippe Grappin
- Institut Agro, University of Angers, INRAE, IRHS, SFR QUASAV, 49000 Angers, France
| | - Soulaiman Sakr
- Institut Agro, University of Angers, INRAE, IRHS, SFR QUASAV, 49000 Angers, France
- Correspondence:
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42
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Carper AL, Warren PS, Adler LS, Irwin RE. Pollen limitation of native plant reproduction in an urban landscape. Am J Bot 2022; 109:1969-1980. [PMID: 36200335 PMCID: PMC10092213 DOI: 10.1002/ajb2.16080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/18/2022] [Revised: 09/14/2022] [Accepted: 09/15/2022] [Indexed: 06/16/2023]
Abstract
PREMISE Evidence suggests that bees may benefit from moderate levels of human development. However, the effects of human development on pollination and reproduction of bee-pollinated plants are less-well understood. Studies have measured natural variation in pollination and plant reproduction as a function of urbanization, but few have experimentally measured the magnitude of pollen limitation in urban vs. non-urban sites. Doing so is important to unambiguously link changes in pollination to plant reproduction. Previous work in the Southeastern United States found that urban sites supported twice the abundance of bees compared to non-urban sites. We tested the hypothesis that greater bee abundance in some of the same urban sites translates into reduced pollen limitation compared to non-urban sites. METHODS We manipulated pollination to three native, wild-growing, bee-pollinated plants: Gelsemium sempervirens, Oenothera fruticosa, and Campsis radicans. Using supplemental pollinations, we tested for pollen limitation of three components of female reproduction in paired urban and non-urban sites. We also measured pollen receipt as a proxy for pollinator visitation. RESULTS We found that all three plant species were pollen-limited for some measures of female reproduction. However, opposite to our original hypothesis, two of the three species were more pollen-limited in urban relative to non-urban sites. We found that open-pollinated flowers in urban sites received less conspecific and more heterospecific pollen on average than those in non-urban sites. CONCLUSIONS These results suggest that even when urban sites have more abundant pollinators, this may not alleviate pollen limitation of native plant reproduction in urban landscapes.
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Affiliation(s)
- Adrian L. Carper
- Department of Biological SciencesDartmouth College, 78 College StHanover, New Hampshire03755USA
- Present address:
Department of Ecology and Evolutionary BiologyUniversity of ColoradoCampus Box 334Boulder, Colorado80309‐0334USA
| | - Paige S. Warren
- Department of Environmental ConservationUniversity of MassachusettsAmherst, Massachusetts01003USA
| | - Lynn S. Adler
- Department of BiologyUniversity of MassachusettsAmherstMA01003USA
| | - Rebecca E. Irwin
- Department of Biological SciencesDartmouth College, 78 College StHanover, New Hampshire03755USA
- Present address:
Department of Applied EcologyNorth Carolina State UniversityRaleighNorth Carolina27695USA
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43
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Afzal S, Singh NK. Effect of zinc and iron oxide nanoparticles on plant physiology, seed quality and microbial community structure in a rice-soil-microbial ecosystem. Environ Pollut 2022; 314:120224. [PMID: 36165830 DOI: 10.1016/j.envpol.2022.120224] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Revised: 09/06/2022] [Accepted: 09/16/2022] [Indexed: 06/16/2023]
Abstract
In this study, we assessed the impact of zinc oxide (ZnO) and iron oxide (FeO) (<36 nm) nanoparticles (NPs) as well as their sulphate salt (bulk) counterpart (0, 25, 100 mg/kg) on rice growth and seed quality as well as the microbial community in the rhizosphere environment of rice. During the rice growing season 2021-22, all experiments were conducted in a greenhouse (temperature: day 30 °C; night 20 °C; relative humidity: 70%; light period: 16 h/8 h, day/night) in rice field soil. Results showed that low concentrations of FeO and ZnO NPs (25 mg/kg) promoted rice growth (height (29%, 16%), pigment content (2%, 3%)) and grain quality parameters such as grains per spike (8%, 9%), dry weight of grains (12%, 14%) respectively. As compared to the control group, the Zn (2%) and Fe (5%) accumulations at their respective low concentrations of NP treatments showed stimulation. Interestingly, our results showed that at low concentration of both the NPs the soil microbes had more diversity and richness than those in the bulk treated and control soil group. Although a number of phyla were affected by the presence of NPs, the strongest effects were observed for change in the abundance of the three phyla for Proteobacteria, Actinobacteria, and Planctomycetes. The rhizosphere environment was notably enriched with potential streptomycin producers, carbon and nitrogen fixers, and lignin degraders with regard to functional groups of microorganisms. However, microbial communities mainly responsible for chitin degradation, ammonia oxidation, and nitrite reduction were found to be decreased. The results from this study highlight significant changes in several plant-based endpoints, as well as the rhizosphere soil microorganisms. It further adds information to our understanding of the nanoscale-specific impacts of important micronutrient oxides on both rice and its associated soil microbiome.
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Affiliation(s)
- Shadma Afzal
- Department of Biotechnology, Motilal Nehru National Institute of Technology Allahabad, Prayagraj, U.P., 211004, India
| | - Nand K Singh
- Department of Biotechnology, Motilal Nehru National Institute of Technology Allahabad, Prayagraj, U.P., 211004, India.
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44
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Meder F, Baytekin B, Del Dottore E, Meroz Y, Tauber F, Walker I, Mazzolai B. A perspective on plant robotics: from bioinspiration to hybrid systems. Bioinspir Biomim 2022; 18:015006. [PMID: 36351300 DOI: 10.1088/1748-3190/aca198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2022] [Accepted: 11/09/2022] [Indexed: 06/16/2023]
Abstract
As miscellaneous as the Plant Kingdom is, correspondingly diverse are the opportunities for taking inspiration from plants for innovations in science and engineering. Especially in robotics, properties like growth, adaptation to environments, ingenious materials, sustainability, and energy-effectiveness of plants provide an extremely rich source of inspiration to develop new technologies-and many of them are still in the beginning of being discovered. In the last decade, researchers have begun to reproduce complex plant functions leading to functionality that goes far beyond conventional robotics and this includes sustainability, resource saving, and eco-friendliness. This perspective drawn by specialists in different related disciplines provides a snapshot from the last decade of research in the field and draws conclusions on the current challenges, unanswered questions on plant functions, plant-inspired robots, bioinspired materials, and plant-hybrid systems looking ahead to the future of these research fields.
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Affiliation(s)
- Fabian Meder
- Bioinspired Soft Robotics, Istituto Italiano di Tecnologia, Genoa, Italy
| | - Bilge Baytekin
- Department of Chemistry and UNAM National Nanotechnology Research Center, Bilkent University, Ankara, Turkey
| | | | - Yasmine Meroz
- School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel
| | - Falk Tauber
- Plant Biomechanics Group (PBG) Freiburg, Botanic Garden of the University of Freiburg, Freiburg, Germany
- Cluster of Excellence livMatS @ FIT-Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Freiburg, Germany
| | - Ian Walker
- Department of Electrical and Computer Engineering, Clemson University, Clemson, SC, United States of America
| | - Barbara Mazzolai
- Bioinspired Soft Robotics, Istituto Italiano di Tecnologia, Genoa, Italy
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45
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Herman K, Montanares M, Bravo L, Plenzler J. Sensor Actuator Network for In Situ Studies of Antarctic Plants Physiology. Sensors (Basel) 2022; 22:8944. [PMID: 36433538 PMCID: PMC9695489 DOI: 10.3390/s22228944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Revised: 11/11/2022] [Accepted: 11/13/2022] [Indexed: 06/16/2023]
Abstract
This article documents a custom sensor-actuator network designed and implemented as a part of experimental setup, where a long-term phenological response of antarctic plants is studied. The first part of our work presents the context of the study, reports experimental methods used in antarctic plant field studies, and characterizes the environmental conditions and logistics facilities available on the measurement spot. After contextualization of the research, we present, in detail, both the network itself and some results obtained during the Antarctic summer seasons between 2019 and 2022 on the King George Island, South Shetlands. The results collected with our network and correlated with selected data registered with a reference automatic meteorological station reveal the thermal plants response. The groups of plants individuals, which were actively warmed using thermal actuators, show the nighttime temperature difference, in reference to the air temperature, of 5 ∘C, which complements the daytime difference caused by the passive method of open top chamber (OTC) used in previous studies carried out in the same localization.
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Affiliation(s)
- Krzysztof Herman
- Department of Electrical and Electronics Engineering, University of the Bío-Bío, Concepción 4051381, Chile
| | - Mauricio Montanares
- Department of Electrical Engineering, University of Concepción, Concepción 4070386, Chile
| | - Leon Bravo
- Soil Interaction and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus, University of the Frontier, Temuco 4811230, Chile
| | - Joanna Plenzler
- Institute of Biochemistry and Biophysics, Polish Academy of Sciences, 02-106 Warsaw, Poland
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46
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Brownlee C. Plant physiology: Anatomy of a plant action potential. Curr Biol 2022; 32:R1000-R1002. [PMID: 36220083 DOI: 10.1016/j.cub.2022.08.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
The Venus flytrap possesses modified leaves that can snap shut fast enough to catch a fly. A new study identifies the major components of the toolkit that allows the flytrap to fire action potentials, illustrating how different ion channels and transporters are recruited to give rise to this unique plant behavioural response.
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Affiliation(s)
- Colin Brownlee
- Marine Biological Association, the Laboratory, Citadel Hill, Plymouth, UK.
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47
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Wang K, Xing Q, Ahammed GJ, Zhou J. Functions and prospects of melatonin in plant growth, yield, and quality. J Exp Bot 2022; 73:5928-5946. [PMID: 35640564 DOI: 10.1093/jxb/erac233] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 05/23/2022] [Indexed: 05/27/2023]
Abstract
Melatonin (N-acetyl-5-methoxytryptamine) is an indole molecule widely found in animals and plants. It is well known that melatonin improves plant resistance to various biotic and abiotic stresses due to its potent free radical scavenging ability while being able to modulate plant signaling and response pathways through mostly unknown mechanisms. In recent years, an increasing number of studies have shown that melatonin plays a crucial role in improving crop quality and yield by participating in the regulation of various aspects of plant growth and development. Here, we review the effects of melatonin on plant vegetative growth and reproductive development, and systematically summarize its molecular regulatory network. Moreover, the effective concentrations of exogenously applied melatonin in different crops or at different growth stages of the same crop are analysed. In addition, we compare endogenous phytomelatonin concentrations in various crops and different organs, and evaluate a potential function of phytomelatonin in plant circadian rhythms. The prospects of different approaches in regulating crop yield and quality through exogenous application of appropriate concentrations of melatonin, endogenous modification of phytomelatonin metabolism-related genes, and the use of nanomaterials and other technologies to improve melatonin utilization efficiency are also discussed.
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Affiliation(s)
- Kaixin Wang
- Department of Horticulture/Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Yuhangtang Road 866, Hangzhou, 310058, China
- Hainan Institute, Zhejiang University, Sanya 572025, China
| | - Qufan Xing
- Department of Horticulture/Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Yuhangtang Road 866, Hangzhou, 310058, China
| | - Golam Jalal Ahammed
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, China
- Henan International Joint Laboratory of Stress Resistance Regulation and Safe Production of Protected Vegetables, Luoyang, 471023, China
| | - Jie Zhou
- Department of Horticulture/Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Yuhangtang Road 866, Hangzhou, 310058, China
- Hainan Institute, Zhejiang University, Sanya 572025, China
- Key Laboratory of Horticultural Plants Growth, Development and Quality Improvement, Agricultural Ministry of China, Yuhangtang Road 866, Hangzhou, 310058, China
- Shandong (Linyi) Institute of Modern Agriculture, Zhejiang University, Linyi, 276000, China
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Harmer SL, Fankhauser C, Webb AAR. Focus on circadian rhythms. Plant Physiol 2022; 190:921-923. [PMID: 35900174 PMCID: PMC9516718 DOI: 10.1093/plphys/kiac353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 07/22/2022] [Indexed: 06/15/2023]
Affiliation(s)
| | - Christian Fankhauser
- Faculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne CH-1015, Switzerland
| | - Alex A R Webb
- Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK
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Pan Y, Cieraad E, Armstrong J, Armstrong W, Clarkson BR, Pedersen O, Visser EJW, Voesenek LACJ, van Bodegom PM. Leading trait dimensions in flood-tolerant plants. Ann Bot 2022; 130:383-392. [PMID: 35259242 PMCID: PMC9486907 DOI: 10.1093/aob/mcac031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 03/04/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND AND AIMS While trait-based approaches have provided critical insights into general plant functioning, we lack a comprehensive quantitative view on plant strategies in flooded conditions. Plants adapted to flooded conditions have specific traits (e.g. root porosity, low root/shoot ratio and shoot elongation) to cope with the environmental stressors including anoxic sediments, and the subsequent presence of phytotoxic compounds. In flooded habitats, plants also respond to potential nutrient and light limitations, e.g. through the expression of leaf economics traits and size-related traits, respectively. However, we do not know whether and how these trait dimensions are connected. METHODS Based on a trait dataset compiled on 131 plant species from 141 studies in flooded habitats, we quantitatively analysed how flooding-induced traits are positioned in relation to the other two dominant trait dimensions: leaf economics traits and size-related traits. We evaluated how these key trait components are expressed along wetness gradients, across habitat types and among plant life forms. KEY RESULTS We found that flooding-induced traits constitute a trait dimension independent from leaf economics traits and size-related traits, indicating that there is no generic trade-off associated with flooding adaptations. Moreover, individual flooding-induced traits themselves are to a large extent decoupled from each other. These results suggest that adaptation to stressful environments, such as flooding, can be stressor specific without generic adverse effects on plant functioning (e.g. causing trade-offs on leaf economics traits). CONCLUSIONS The trait expression across multiple dimensions promotes plant adaptations and coexistence across multifaceted flooded environments. The decoupled trait dimensions, as related to different environmental drivers, also explain why ecosystem functioning (including, for example, methane emissions) are species and habitat specific. Thus, our results provide a backbone for applying trait-based approaches in wetland ecology by considering flooding-induced traits as an independent trait dimension.
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Affiliation(s)
| | - Ellen Cieraad
- Institute of Environmental Sciences (CML), Leiden University, Leiden, The Netherlands
- Nelson Marlborough Institute of Technology, Nelson, New Zealand
| | - Jean Armstrong
- Department of Biological Sciences, University of Hull, Hull, UK
- School of Agriculture and Environment, The University of Western Australia, Perth, Australia
| | - William Armstrong
- Department of Biological Sciences, University of Hull, Hull, UK
- School of Agriculture and Environment, The University of Western Australia, Perth, Australia
| | | | - Ole Pedersen
- School of Agriculture and Environment, The University of Western Australia, Perth, Australia
- Freshwater Biological Laboratory, University of Copenhagen, Copenhagen, Denmark
| | - Eric J W Visser
- Experimental Plant Ecology, Institute for Water and Wetland Research, Radboud University, Nijmegen, The Netherlands
| | | | - Peter M van Bodegom
- Institute of Environmental Sciences (CML), Leiden University, Leiden, The Netherlands
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50
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Koyama K, Smith DD. Scaling the leaf length-times-width equation to predict total leaf area of shoots. Ann Bot 2022; 130:215-230. [PMID: 35350072 PMCID: PMC9445601 DOI: 10.1093/aob/mcac043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/06/2022] [Accepted: 03/24/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND AND AIMS An individual plant consists of different-sized shoots, each of which consists of different-sized leaves. To predict plant-level physiological responses from the responses of individual leaves, modelling this within-shoot leaf size variation is necessary. Within-plant leaf trait variation has been well investigated in canopy photosynthesis models but less so in plant allometry. Therefore, integration of these two different approaches is needed. METHODS We focused on an established leaf-level relationship that the area of an individual leaf lamina is proportional to the product of its length and width. The geometric interpretation of this equation is that different-sized leaf laminas from a single species share the same basic form. Based on this shared basic form, we synthesized a new length-times-width equation predicting total shoot leaf area from the collective dimensions of leaves that comprise a shoot. Furthermore, we showed that several previously established empirical relationships, including the allometric relationships between total shoot leaf area, maximum individual leaf length within the shoot and total leaf number of the shoot, can be unified under the same geometric argument. We tested the model predictions using five species, all of which have simple leaves, selected from diverse taxa (Magnoliids, monocots and eudicots) and from different growth forms (trees, erect herbs and rosette herbs). KEY RESULTS For all five species, the length-times-width equation explained within-species variation of total leaf area of a shoot with high accuracy (R2 > 0.994). These strong relationships existed despite leaf dimensions scaling very differently between species. We also found good support for all derived predictions from the model (R2 > 0.85). CONCLUSIONS Our model can be incorporated to improve previous models of allometry that do not consider within-shoot size variation of individual leaves, providing a cross-scale linkage between individual leaf-size variation and shoot-size variation.
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Affiliation(s)
| | - Duncan D Smith
- Department of Botany, University of Wisconsin—Madison, 430 Lincoln Dr., Madison, WI, USA
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