Bioremediation potential of basidiomycetes isolated from compost

An analysis of the versatility and effectiveness of composts for sequestering heavy metal ions, dyes and xenobiotics from soils and aqueous milieus

The persistence and bioaccumulation of environmental pollutants in water bodies, soils and living tissues remain alarmingly related to environmental protection and ecosystem restoration. Adsorption-based techniques appear highly competent in sequestering several environmental pollutants. In this review, the recent research findings reported on the assessments of composts and compost-amended soils as adsorbents of heavy metal ions, dye molecules and xenobiotics have been appraised. This review demonstrates clearly the high adsorption capacities of composts for umpteen environmental pollutants at the lab-scale. The main inferences from this review are that utilization of composts for the removal of heavy metal ions, dye molecules and xenobiotics from aqueous environments and soils is particularly worthwhile and efficient at the laboratory scale, and the adsorption behaviors and effectiveness of compost-type adsorbents for agrochemicals (e.g. herbicides and insecticides) vary considerably because of variabilities in structure, topology, bond connectivity, distribution of functional groups and interactions of xenobiotics with the active humic substances in composts. Compost-based field-scale remediation of environmental pollutants is still sparse and arguably much challenging to implement if, furthermore, real-world soil and water contamination issues are to be addressed effectively. Hence, significant research and process development efforts should be promptly geared and intensified in this direction by extrapolating the lab-scale findings in a cost-effective manner.

Use of plant materials for the bioremediation of soil from an industrial site

Bioremediation is one of the existing techniques applied for treating oil-contaminated soil, which can be improved by the incorporation of low-cost nutritional materials. This study aimed to assess the addition of two low-cost plant residues, sugarcane bagasse (SCB) and leaf litter (LL) of the forest leguminous Mimosa caesalpiniifolia plant (sabiá), either separately or combined, to a contaminated soil from a petroleum refinery area, analyzed after 90 days of treatment. Individually, both amounts of SCB (20 and 40 g kg^-1) favored the growth of total heterotrophic bacteria and total fungi, while LL at 20 g kg^-1 better stimulated the hydrocarbon-degrading microorganism's activity in the soil. However, no TPH removal was observed under any of these conditions. Higher microbial growth was detected by the application of both plant residues in multicontaminated soil. The maximum TPH removal of 30% was achieved in amended soil with 20 g kg^-1 SCB and 20 kg^-1 LL. All the experimental conditions revealed changes in the microbial community structure, related to the handling of the soil, with abundance of Alphaproteobacteria. This study demonstrates the effectiveness of the plant residues SCB and LL as low-cost nutritional materials for biodegradation of hydrocarbon in real oil contaminated soil by indigenous populations.

Bioremediation of soil contaminated crude oil by Agaricomycetes

BACKGROUND

One of the most important environmental problems is the decontamination of petroleum hydrocarbons polluted soil, particularly in the oil-rich country. Bioremediation is the most effective way to remove these pollutants in the soil. Spent mushroom compost has great ability to decompose lignin-like pollution. The purpose of this study was the bioremediation of soil contaminated with crude oil by an Agaricomycetes.

METHODS

Soil sample amended with spent mushroom compost into 3%, 5% and 10% (w/w) with or without fertilizer. Ecotoxicity germination test was conducted with Lipidium sativa.

RESULTS

The amplified fragment (18 s rDNA) sequence of this mushroom confirmed that the strain belonged to Pleurotus ostreatus species with complete homology (100% identity). All tests experiment sets were effective at supporting the degradation of petroleum hydrocarbons contaminated soil after three months. Petroleum contaminated soil amended with Spent mushroom compost 10% and fertilizer removed 64.7% of total petroleum hydrocarbons compared control. The germination index (%) in ecotoxicity tests ranged from 60.4 to 93.8%.

CONCLUSIONS

This showed that the petroleum hydrocarbons contaminated soil amended with 10% Spent mushroom compost had higher bioremediation ability and reduced soil toxicity in less than three months.

Mycoremediation of hydrocarbons with basidiomycetes-a review

The literature on hydrocarbon remediation with basidiomycetes was reviewed. Two ecological groups are considered for bioremediation, the saprotrophic basidiomycetes (white-rot and brown-rot fungi) and the ectomycorrhizal basidiomycetes. A remarkable capacity of basidiomycetes for in vitro degradation of simple and recalcitrant hydrocarbons, such as PAH, persistent organic pollutants (POPs), halogenated HC, aromatic HC and phenols, explosives and dyes was reported for many species. However, there is a need for more studies on the practical feasibility of field applications with basidiomycetes.

Suppressive composts: microbial ecology links between abiotic environments and healthy plants

Suppressive compost provides an environment in which plant disease development is reduced, even in the presence of a pathogen and a susceptible host. Despite the numerous positive reports, its practical application is still limited. The main reason for this is the lack of reliable prediction and quality control tools for evaluation of the level and specificity of the suppression effect. Plant disease suppression is the direct result of the activity of consortia of antagonistic microorganisms that naturally recolonize the compost during the cooling phase of the process. Thus, it is imperative to increase the level of understanding of compost microbial ecology and population dynamics. This may lead to the development of an ecological theory for complex ecosystems as well as favor the establishment of hypothesis-driven studies.

Industrial dye degradation and detoxification by basidiomycetes belonging to different eco-physiological groups

Twenty-five basidiomycetes belonging to 17 species and ascribable to different eco-physiological groups were screened for their ability to decolorize 9 commercially important industrial dyes comprising a variety of anthraquinonic, azoic and phtalocyanin chromophores. The influence of the culture medium, particularly its C:N ratio, on decolourisation capacity was considered on solid substrate. Three strains of Bjerkandera adusta performed the highest decolourisation yields being able to degrade all dyes on all media and to produce a wide spectrum of oxidative enzyme activities. Hence, B. adusta strains were selected for further experiments in liquid cultures together with other 6 fungi that resulted effective in the decolourisation of the largest number of molecules in the broadest spectrum of cultural conditions. Particularly B. adusta MUT 3060 was found very effective (decolourisation percentage over 90%) in the treatment of simulated effluents composed of single and mixed dyes at high concentration (1000 mg/l). Peroxidase activity dependent (up to 362 U/l) and independent from manganese (up to 57 U/l) were detected during the decolourisation process. The Lemna minor toxicity test showed a significant reduction of toxicity after the fungal treatment indicating that decolourisation corresponded to an actual detoxification of the wastewater.

Characterization of two diesel fuel degrading microbial consortia enriched from a non acclimated, complex source of microorganisms

BACKGROUND

The bioremediation of soils impacted by diesel fuels is very often limited by the lack of indigenous microflora with the required broad substrate specificity. In such cases, the soil inoculation with cultures with the desired catabolic capabilities (bioaugmentation) is an essential option. The use of consortia of microorganisms obtained from rich sources of microbes (e.g., sludges, composts, manure) via enrichment (i.e., serial growth transfers) on the polluting hydrocarbons would provide bioremediation enhancements more robust and reproducible than those achieved with specialized pure cultures or tailored combinations (co-cultures) of them, together with none or minor risks of soil loading with unrelated or pathogenic allocthonous microorganisms.

RESULTS

In this work, two microbial consortia, i.e., ENZ-G1 and ENZ-G2, were enriched from ENZYVEBA (a complex commercial source of microorganisms) on Diesel (G1) and HiQ Diesel (G2), respectively, and characterized in terms of microbial composition and hydrocarbon biodegradation capability and specificity. ENZ-G1 and ENZ-G2 exhibited a comparable and remarkable biodegradation capability and specificity towards n-C10 to n-C24 linear paraffins by removing about 90% of 1 g l-1 of diesel fuel applied after 10 days of aerobic shaken flask batch culture incubation at 30 degrees C. Cultivation dependent and independent approaches evidenced that both consortia consist of bacteria belonging to the genera Chryseobacterium, Acinetobacter, Psudomonas, Stenotrophomonas, Alcaligenes and Gordonia along with the fungus Trametes gibbosa. However, only the fungus was found to grow and remarkably biodegrade G1 and G2 hydrocarbons under the same conditions. The biodegradation activity and specificity and the microbial composition of ENZ-G1 and ENZ-G2 did not significantly change after cryopreservation and storage at -20 degrees C for several months.

CONCLUSIONS

ENZ-G1 and ENZ-G2 are very similar highly enriched consortia of bacteria and a fungus capable of extensively degrading a broad range of the hydrocarbons mainly composing diesel fuels. Given their remarkable biodegradation potential, stability and resistance to cryopreservation, both consortia appear very interesting candidates for bioaugmentation operations on Diesel fuel impacted soils and sites.