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Wang H, Wang X, Zhang L, Zhang X, Cao Y, Xiao R, Bai Z, Ma L. Meta-analysis addressing the potential of antibiotic resistance gene elimination through aerobic composting. WASTE MANAGEMENT (NEW YORK, N.Y.) 2024; 182:197-206. [PMID: 38670003 DOI: 10.1016/j.wasman.2024.04.034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 04/15/2024] [Accepted: 04/19/2024] [Indexed: 04/28/2024]
Abstract
The significant increase in antibiotic resistance genes (ARGs) in organic solid wastes (OSWs) has emerged as a major threat to the food chain. Aerobic composting is a widely used technology for OSW management, with the potential to influence the fate of AGRs. However, the variability of the ARG elimination effects reported in different studies has highlighted the uncertainty regarding the effects of composting on ARGs. To identify the potential of composting in reducing ARG and the factors (e.g., composting technologies and physiochemical properties) influence ARG changes, a meta-analysis was conducted with a database including 4,232 observations. The abundances of ARGs and mobile genetic elements (MGEs) can be substantially reduced by 74.3% and 78.8%, respectively, via aerobic composting. During composting, the ARG levels in chicken and swine manure tended to be reduced more significantly (81.7% and 78.0%) compared to those in cattle manure (52.3%) and sewage sludge (32.6%). The reduction rate of sulfonamide resistant genes was only 35.3%, which was much lower than those of other types. MGEs and composting duration (CD) were identified as the most important factors driving ARG changes during composting. These findings provide a comprehensive insight into the effects of composting on ARG reduction, which may help prevent the transmission in food systems.
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Affiliation(s)
- Hongge Wang
- Key Laboratory of Agricultural Water Resources, Hebei Key Laboratory of Soil Ecology, Center for Agricultural Resources Research, Institute of Genetic and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang 050021, Hebei, PR China; University of Chinese Academy of Sciences, 19 A Yuquan Road, Shijingshan District, Beijing 100049, PR China
| | - Xuan Wang
- Key Laboratory of Agricultural Water Resources, Hebei Key Laboratory of Soil Ecology, Center for Agricultural Resources Research, Institute of Genetic and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang 050021, Hebei, PR China
| | - Lu Zhang
- Key Laboratory of Agricultural Water Resources, Hebei Key Laboratory of Soil Ecology, Center for Agricultural Resources Research, Institute of Genetic and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang 050021, Hebei, PR China; University of Chinese Academy of Sciences, 19 A Yuquan Road, Shijingshan District, Beijing 100049, PR China
| | - Xinyuan Zhang
- Key Laboratory of Agricultural Water Resources, Hebei Key Laboratory of Soil Ecology, Center for Agricultural Resources Research, Institute of Genetic and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang 050021, Hebei, PR China; University of Chinese Academy of Sciences, 19 A Yuquan Road, Shijingshan District, Beijing 100049, PR China
| | - Yubo Cao
- Key Laboratory of Agricultural Water Resources, Hebei Key Laboratory of Soil Ecology, Center for Agricultural Resources Research, Institute of Genetic and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang 050021, Hebei, PR China; University of Chinese Academy of Sciences, 19 A Yuquan Road, Shijingshan District, Beijing 100049, PR China
| | - Ran Xiao
- Interdisciplinary Research Center for Agriculture Green Development in Yangtze River Basin, College of Resources and Environment, Southwest University, Chongqing 400715, PR China
| | - Zhaohai Bai
- Key Laboratory of Agricultural Water Resources, Hebei Key Laboratory of Soil Ecology, Center for Agricultural Resources Research, Institute of Genetic and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang 050021, Hebei, PR China
| | - Lin Ma
- Key Laboratory of Agricultural Water Resources, Hebei Key Laboratory of Soil Ecology, Center for Agricultural Resources Research, Institute of Genetic and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang 050021, Hebei, PR China.
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2
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Li L, Liu X, Li J, Chen Z, Song T, Jin S, Zhu C, Luo L, Geng B, Zhu J. Mitigating Tetracycline antibiotic contamination in chicken manure using ex situ fermentation system. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 356:120614. [PMID: 38513588 DOI: 10.1016/j.jenvman.2024.120614] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Revised: 02/21/2024] [Accepted: 03/10/2024] [Indexed: 03/23/2024]
Abstract
Excessive use of tetracycline antibiotics in poultry farming results in significant concentrations of these drugs and tetracycline resistance genes (TRGs) in chicken manure, impacting both environmental and human health. Our research represents the first investigation into the removal dynamics of chlortetracycline (CTC) and TRGs in different layers of an ex situ fermentation system (EFS) for chicken waste treatment. By pinpointing and analyzing dominant TRGs-harboring bacteria and their interactions with environmental variables, we've closed an existing knowledge gap. Findings revealed that CTC's degradation half-lives spanned 3.3-5.8 days across different EFS layers, and TRG removal efficiency ranged between 86.82% and 99.52%. Network analysis highlighted Proteobacteria and Actinobacteria's essential roles in TRGs elimination, whereas Chloroflexi broadened the potential TRG hosts in the lower layer. Physical and chemical conditions within the EFS influenced microbial community diversity, subsequently impacting TRGs and integrons. Importantly, our study reports that the middle EFS layer exhibited superior performance in eliminating CTC and key TRGs (tetW, tetG, and tetX) as well as intI2. Our work transcends immediate health and environmental remediation by offering insights that encourage sustainable agriculture practices.
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Affiliation(s)
- Luyao Li
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Xue Liu
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Jiabin Li
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Zhuobo Chen
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Tingting Song
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Shan Jin
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Changxiong Zhu
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Liangguo Luo
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Bing Geng
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China.
| | - Jie Zhu
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China.
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Luo Q, Wang H, Lu X, Wang C, Chen R, Cheng J, He T, Fu T. Potential of combined reactor and static composting applications for the removal of heavy metals and antibiotic resistance genes from chicken manure. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 356:120592. [PMID: 38508009 DOI: 10.1016/j.jenvman.2024.120592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 03/01/2024] [Accepted: 03/10/2024] [Indexed: 03/22/2024]
Abstract
Chicken manure (CM) can pose a serious threat to environmental and human health, and need to be managed properly. The compost can effectively treat CM. However, there is limited research on the heavy metals and antibiotic resistance genes (ARGs) during compost CM. In this study, the combined application of reactor and static composting (RSC) was used to produce organic fertilizer of CM (OCM), and heavy metals, ARGs and bacterial community structure was investigated. The results show that RSC could be used to produce OCM, and OCM meet the National organic fertilizer standard (NY/T525-2021). Compared to the initial CM, DTPA-Cu, DTPA-Zn, DTPA-Pb, DTPA-Cr, DTPA-Ni and DTPA-As in OCM decreased by 40.83%, 23.73%, 34.27%, 38.62%, 16.26%, and 43.35%, respectively. RSC decreased the relative abundance of ARGs in CM by 84.06%, while the relative abundance of sul1 and ermC increased. In addition, the relative abundance and diversity of ARGs were mainly influenced by the bacterial community, with Actinobacteria, Firmicutes, and Proteobacteria becoming the dominant phyla during composting, and probably being the main carriers and dispersers of most of the ARGs. Network analyses confirmed that Gracilibacillus, Lactobacillus, Nocardiopsis, Mesorhizobium and Salinicoccus were the main potential hosts of ARGs, with the main potential hosts of sul1 and ermC being Mesorhizobium and Salinicoccus. The passivation and physicochemical properties of heavy metals contribute to the removal of ARGs, with sul1 and ermC being affected by the toal heavy metals. Application of RSC allows CM to produce mature, safe organic fertilizer after 32 d and reduces the risk of rebound from ARGs, but the issues of sul1 and ermC gene removal cannot be ignored.
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Affiliation(s)
- Qu Luo
- College of Resource and Environmental Engineering, Guizhou University, Guiyang, 550025, Guizhou, China; Guizhou Engineering Laboratory of Mountain Livestock and Poultry Farming Pollution Control and Resource Technology, Institute of New Rural Development, Guizhou University, Guiyang, 550025, China
| | - Hu Wang
- Guizhou Chuyang Ecological Environmental Protection Technology Co., Ltd., Guizhou, 550003, China
| | - Xiaoqing Lu
- College of Resource and Environmental Engineering, Guizhou University, Guiyang, 550025, Guizhou, China; Guizhou Engineering Laboratory of Mountain Livestock and Poultry Farming Pollution Control and Resource Technology, Institute of New Rural Development, Guizhou University, Guiyang, 550025, China
| | - Can Wang
- Lijiang Agricultural Environmental Protection Monitoring Station, Lijiang, Yunnan, 674100, China
| | - Ruiying Chen
- College of Resource and Environmental Engineering, Guizhou University, Guiyang, 550025, Guizhou, China; Guizhou Engineering Laboratory of Mountain Livestock and Poultry Farming Pollution Control and Resource Technology, Institute of New Rural Development, Guizhou University, Guiyang, 550025, China
| | - Jianbo Cheng
- Guizhou Engineering Laboratory of Mountain Livestock and Poultry Farming Pollution Control and Resource Technology, Institute of New Rural Development, Guizhou University, Guiyang, 550025, China
| | - Tengbing He
- College of Resource and Environmental Engineering, Guizhou University, Guiyang, 550025, Guizhou, China; Guizhou Engineering Laboratory of Mountain Livestock and Poultry Farming Pollution Control and Resource Technology, Institute of New Rural Development, Guizhou University, Guiyang, 550025, China
| | - Tianling Fu
- College of Resource and Environmental Engineering, Guizhou University, Guiyang, 550025, Guizhou, China; Guizhou Engineering Laboratory of Mountain Livestock and Poultry Farming Pollution Control and Resource Technology, Institute of New Rural Development, Guizhou University, Guiyang, 550025, China.
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Singh A, Singh E, Khan N, Shukla S, Bhargava PC. Effect of biochar on the fate of antibiotic resistant genes and integrons in compost amended agricultural soil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:23535-23548. [PMID: 38421542 DOI: 10.1007/s11356-024-32600-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 02/19/2024] [Indexed: 03/02/2024]
Abstract
The persistence and transmission of emerging pollutants such as antibiotic resistance genes (ARGs) via mobile genetic elements (MGEs) have caused concern to scientific community. Composting practises are often adapted for the reduction of organic waste or to enhance fertility in agriculture soil but its continuous usage has posed a potential risk of increased abundance of ARGs in soil. Thus, the present study scrutinises the emerging risk of ARGs and MGEs in agriculture soil and its potential mitigation using biochar owing to its proven environmental sustainability and performance. After 30 days incubation, ARG distribution of SulI, SulII, dfrA1, dfrA12, tetA, flor, and ErmA was 50, 37.5, 37.5, 62.5, 42.11, 62.5, and 52.63% in control samples whereas it was 5, 15.78, 21.05, 15.79, 10.53, 21.05, and 31.58%, respectively, for biochar amended samples. Similarly, IntI1 and IntI2 in control and biochar amended samples were 18.75 and 6.25% and 10.53 and 5.26%, respectively. Principal component analysis (PCA) factor suggests that biochar amendment samples showed enhanced value for pH, organic matter, and organic carbon over control samples. Furthermore, Pearson's correlation analysis performed between detected ARGs and MGEs demonstrated the positive and significant correlation at p < 0.05 for both control and biochar amended samples.
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Affiliation(s)
- Anuradha Singh
- Aquatic Toxicology Laboratory, Environmental Toxicology Group, Food, Drug & Chemical, Environment and Systems, Toxicology (FEST) Division, Council of Scientific and Industrial Research-Indian Institute of Toxicology Research (CSIR-IITR), Vishvigyan Bhawan, 31, Mahatma Gandhi Marg, Lucknow, 226001, Uttar Pradesh, India
| | - Ekta Singh
- Aquatic Toxicology Laboratory, Environmental Toxicology Group, Food, Drug & Chemical, Environment and Systems, Toxicology (FEST) Division, Council of Scientific and Industrial Research-Indian Institute of Toxicology Research (CSIR-IITR), Vishvigyan Bhawan, 31, Mahatma Gandhi Marg, Lucknow, 226001, Uttar Pradesh, India
| | - Nawaz Khan
- Aquatic Toxicology Laboratory, Environmental Toxicology Group, Food, Drug & Chemical, Environment and Systems, Toxicology (FEST) Division, Council of Scientific and Industrial Research-Indian Institute of Toxicology Research (CSIR-IITR), Vishvigyan Bhawan, 31, Mahatma Gandhi Marg, Lucknow, 226001, Uttar Pradesh, India
| | - Saurabh Shukla
- Aquatic Toxicology Laboratory, Environmental Toxicology Group, Food, Drug & Chemical, Environment and Systems, Toxicology (FEST) Division, Council of Scientific and Industrial Research-Indian Institute of Toxicology Research (CSIR-IITR), Vishvigyan Bhawan, 31, Mahatma Gandhi Marg, Lucknow, 226001, Uttar Pradesh, India
| | - Preeti Chaturvedi Bhargava
- Aquatic Toxicology Laboratory, Environmental Toxicology Group, Food, Drug & Chemical, Environment and Systems, Toxicology (FEST) Division, Council of Scientific and Industrial Research-Indian Institute of Toxicology Research (CSIR-IITR), Vishvigyan Bhawan, 31, Mahatma Gandhi Marg, Lucknow, 226001, Uttar Pradesh, India.
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Wang L, Zhang T, Cai T, Xiang Q, Liu X, Zhu D. The pH-specific response of soil resistome to triclocarban and arsenic co-contamination. JOURNAL OF HAZARDOUS MATERIALS 2024; 464:132952. [PMID: 37952336 DOI: 10.1016/j.jhazmat.2023.132952] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 10/23/2023] [Accepted: 11/06/2023] [Indexed: 11/14/2023]
Abstract
Heavy metals as well as disinfectants affect the spread of antibiotic resistance genes (ARGs) in soil microbes, however, their cumulative impacts on the proliferation of ARGs are not well studied. In addition, both the chemical stability/availability and ARG profiles are affected by the soil pH, but it has never been considered in the systematic evaluation of soil resistome. In the present study, a microcosm experiment was conducted to study the combined effects of arsenic and triclocarban on the resistome in soil samples with variable pH (pH 4-7). The simultaneous additions of arsenic and triclocarban increase the ARG abundance at pH > 6, because of the intensive co-selective pressures triggered by the increase in concentrations of available arsenic and triclocarban. The occurrence of multidrug ARGs increases with the addition of arsenic and triclocarban, due to the preferred selection of their functional flexibility. The presence of arsenic and triclocarban is strongly related to the spread of MGEs affecting the soil resistome. Furthermore, pH alters the patterns of microbial inhabitants, increasing the relative abundance of Bacteroidota and Proteobacteria and contributing to the prevalence of tetracycline and sulfonamide ARGs at neutral pH. These findings have insight that the effects of arsenic and triclocarban co-contamination on the soil antibiotic resistome is pH dependent.
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Affiliation(s)
- Lu Wang
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, PR China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, PR China
| | - Tianlun Zhang
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, PR China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Tiangui Cai
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, PR China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, PR China
| | - Qian Xiang
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, PR China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, PR China
| | - Xiaohui Liu
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266003, PR China; Key Laboratory of Marine Environmental Science and Ecology, Ministry of Education, Ocean University of China, Qingdao 266003, PR China.
| | - Dong Zhu
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, PR China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, PR China.
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6
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Ding Y, Li D, Li J, Lin H, Zhang Z, Chang CC, Zhi S. Relationships between arsenic biotransformation genes, antibiotic resistance genes, and microbial function under different arsenic stresses during composting. ENVIRONMENT INTERNATIONAL 2024; 184:108460. [PMID: 38335625 DOI: 10.1016/j.envint.2024.108460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 12/30/2023] [Accepted: 01/23/2024] [Indexed: 02/12/2024]
Abstract
Although the arsenic contamination and antibiotic resistance genes (ARGs) during composting have been studied separately, there is limited information on their interactions, particularly, the relationship between arsenic biotransformation genes (ABGs) and ARGs. Therefore, the present study used different forms of arsenic stress (organic and inorganic arsenic at 10 and 50 mg/kg) in pig manure and straw co-composting, to evaluate the effects of arsenic stress on microbial community structures, metabolic function, ABGs, and ARGs. The results showed that arsenic stress had different effects on different parameters and promoted the microbial formation of humic acid and the biodegradation of fulvic acid. Inorganic arsenic showed more rapid effects on microbial community structure, visible within about 20 days, while the effects of organic arsenic were later (about 45 days) due to the necessity of transformation. Moreover, the addition of organic roxarsone and inorganic arsenic resulted in higher expression of ABGs and ARGs, respectively. Arsenic addition also caused increased expression of genes associated with replication and repair. A significant relationship was observed between ABG and ARG expression, for instance, genes involved in arsenic reduction and oxidation were influenced by genes involved in aminoglycoside and chloramphenicol resistance genes (p < 0.05). These complex interactions among microorganisms, functional genes, and external parameters contribute to the understanding of the mechanisms underlying cross-contamination.
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Affiliation(s)
- Yongzhen Ding
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China; China-UK Agro-Environmental Pollution Prevention and Control Joint Research Centre, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China
| | - Daoxian Li
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China
| | - Jiajia Li
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China
| | - Hui Lin
- Institute of Environment, Resource, Soil and Fertilizers, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | - Zulin Zhang
- The James Hutton Institute, Aberdeen AB15 8QH, UK
| | - Chein-Chi Chang
- Washington D.C. Water and Sewer Authority, Ellicott city, MD, USA
| | - Suli Zhi
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China.
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Wang X, Liu N, Zeng R, Liu G, Yao H, Fang J. Change of core microorganisms and nitrogen conversion pathways in chicken manure composts by different substrates to reduce nitrogen losses. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:14959-14970. [PMID: 38285254 DOI: 10.1007/s11356-024-31901-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Accepted: 01/03/2024] [Indexed: 01/30/2024]
Abstract
Due to the rapid development of animal husbandry, the associated environmental problems cannot be ignored, with the management of livestock and poultry manure emerging as the most prominent issue. Composting technology has been widely used in livestock and poultry manure management. A deeper understanding of the nitrogen conversion process during composting offers a theoretical foundation for selecting compost substrates. In this study, the effects of sawdust (CK) and spent mushroom compost (T1) as auxiliary materials on nitrogen as well as microbial structure in the composting process when composted with chicken manure were investigated. At the end of composting, the nitrogen loss of T1 was reduced by 17.18% relative to CK. When used as a compost substrate, spent mushroom compost accelerates the succession of microbial communities within the compost pile and alters the core microbial communities within the microbial community. Bacterial genera capable of cellulose degradation (Fibrobacter, Herbinix) are new core microorganisms that influence the assimilation of nitrate reduction during compost maturation. Using spent mushroom compost as a composting substrate increased the enzyme activity of nitrogen assimilation while decreasing the enzyme activity of the denitrification pathway.
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Affiliation(s)
- Xinyu Wang
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, 410128, Hunan, China
| | - Naiyuan Liu
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, 410128, Hunan, China
| | - Rong Zeng
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, 410128, Hunan, China
| | - Gang Liu
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, 410128, Hunan, China
- Hunan Engineering Laboratory for Pollution Control and Waste, Utilization in Swine Production, Changsha, 410128, China
| | - Hao Yao
- Changsha IMADEK Intelligent Technology Co., LTD, Changsha, China
| | - Jun Fang
- College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, 410128, Hunan, China.
- Hunan Engineering Laboratory for Pollution Control and Waste, Utilization in Swine Production, Changsha, 410128, China.
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Liu L, Yin Q, Hou Y, Ma R, Li Y, Wang Z, Yang G, Liu Y, Wang H. Fungus reduces tetracycline-resistant genes in manure treatment by predation of bacteria. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167462. [PMID: 37783436 DOI: 10.1016/j.scitotenv.2023.167462] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 09/25/2023] [Accepted: 09/27/2023] [Indexed: 10/04/2023]
Abstract
New strategies to remove antibiotic resistance genes (ARGs), one of the most pressing threats to public health, are urgently needed. This study showed that the fungus Phanerochaete chrysosporium seeded to a composting reactor (CR) could remarkably reduce tetracycline-resistant genes (TRGs). The reduction efficiencies for the five main TRGs (i.e., tetW, tetO, tetM, tetPA, and tet(32)) increased by 8 to 100 folds compared with the control without P. chrysosporium, and this could be attributed to the decrease in the quantity of bacteria. Enumeration based on green fluorescence protein labeling further showed that P. chrysosporium became dominant in the CR. Meanwhile, the bacteria in the CR invaded the fungal cells via the cell wall defect of chlamydospore or active invasion. Most of the invasive bacteria trapped inside the fungus could not survive, resulting in bacterial death and the degradation of their TRGs by the fungal nucleases. As such, the predation of tetracycline-resistant bacteria by P. chrysosporium was mainly responsible for the enhanced removal of TRGs in the swine manure treatment. This study offers new insights into the microbial control of ARGs.
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Affiliation(s)
- Lei Liu
- Henan Engineering Laboratory for Bioconversion Technology of Functional Microbes, College of Life Sciences, Henan Normal University, Xinxiang 453007, China
| | - Qianxi Yin
- Henan Engineering Laboratory for Bioconversion Technology of Functional Microbes, College of Life Sciences, Henan Normal University, Xinxiang 453007, China
| | - Yu Hou
- Henan Engineering Laboratory for Bioconversion Technology of Functional Microbes, College of Life Sciences, Henan Normal University, Xinxiang 453007, China
| | - Rui Ma
- Henan Engineering Laboratory for Bioconversion Technology of Functional Microbes, College of Life Sciences, Henan Normal University, Xinxiang 453007, China
| | - Yi Li
- Henan Engineering Laboratory for Bioconversion Technology of Functional Microbes, College of Life Sciences, Henan Normal University, Xinxiang 453007, China
| | - Zhenyu Wang
- Henan Engineering Laboratory for Bioconversion Technology of Functional Microbes, College of Life Sciences, Henan Normal University, Xinxiang 453007, China
| | - Ganggang Yang
- Henan Engineering Laboratory for Bioconversion Technology of Functional Microbes, College of Life Sciences, Henan Normal University, Xinxiang 453007, China
| | - Yu Liu
- School of Civil and Environmental Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Hailei Wang
- Henan Engineering Laboratory for Bioconversion Technology of Functional Microbes, College of Life Sciences, Henan Normal University, Xinxiang 453007, China.
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Song J, Chen Y, Mi H, Xu R, Zhang W, Wang C, Rensing C, Wang Y. Prevalence of antibiotic and metal resistance genes in phytoremediated cadmium and zinc contaminated soil assisted by chitosan and Trichoderma harzianum. ENVIRONMENT INTERNATIONAL 2024; 183:108394. [PMID: 38128385 DOI: 10.1016/j.envint.2023.108394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 12/15/2023] [Accepted: 12/15/2023] [Indexed: 12/23/2023]
Abstract
Heavy metal in soil have been shown to be toxic with high concentrations and acts as selective pressure on both bacterial metal and antibiotic resistance determinants, posing a serious risk to public health. In cadmium (Cd) and zinc (Zn) contaminated soil, chitosan (Chi) and Trichoderma harzianum (Tri) were applied alone and in combination to assist phytoremediation by Amaranthus hypochondriacus L. Prevalence of antibiotic and metal resistance genes (ARGs and MRGs) in the soil was also evaluated using metagenomic approach. Results indicated that the phytoremediation of Cd and Zn contaminated soil was promoted by Chi, and Tri further reinforced this effect, along with the increased availability of Cd and Zn in soil. Meanwhile, combination of Chi and Tri enhanced the prevalence of ARGs (e.g., multidrug and β-lactam resistance genes) and maintained a high level of MRGs (e.g., chromium, copper) in soil. Soil available Zn and Cd fractions were the main factors contributing to ARGs profile by co-selection, while boosted bacterial hosts (e.g., Mitsuaria, Solirubrobacter, Ramlibacter) contributed to prevalence of most MRGs (e.g., Cd). These findings indicate the potential risk of ARGs and MRGs propagation in phytoremediation of metal contaminated soils assisted by organic and biological agents.
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Affiliation(s)
- Jianxiao Song
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710000, Shaanxi, PR China; Shaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, Xi'an 710000, Shaanxi, PR China
| | - Yanlong Chen
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710000, Shaanxi, PR China; Shaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, Xi'an 710000, Shaanxi, PR China.
| | - Huizi Mi
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710000, Shaanxi, PR China
| | - Risheng Xu
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710000, Shaanxi, PR China; Shaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, Xi'an 710000, Shaanxi, PR China
| | - Wenshuang Zhang
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710000, Shaanxi, PR China
| | - Chao Wang
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710000, Shaanxi, PR China; Shaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, Xi'an 710000, Shaanxi, PR China
| | - Christopher Rensing
- Institute of Environmental Microbiology, Fujian Agriculture and Forestry University, Fuzhou 350002, PR China
| | - Yuheng Wang
- School of Ecology and Environment, Northwestern Polytechnical University, Xi'an 710000, Shaanxi, PR China; Shaanxi Key Laboratory of Qinling Ecological Intelligent Monitoring and Protection, Xi'an 710000, Shaanxi, PR China
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10
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Fu Q, Chen Z, Zhu C, Wen Q, Bao H, Wu Y. Size matters: Powder biochar promotes the elimination of antibiotics resistance genes and potential hosts during swine manure composting. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 906:167384. [PMID: 37797762 DOI: 10.1016/j.scitotenv.2023.167384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 09/16/2023] [Accepted: 09/24/2023] [Indexed: 10/07/2023]
Abstract
Livestock manure faced acute environmental pollution and ecology risky caused by antibiotic resistance genes (ARGs). This study investigated the effects of biochar particle size including powder biochar (75 μm, PB), and granular biochar (2 mm, GB) on ARGs variation during the aerobic composting. The results showed that the total relative abundance (RA) of the ARGs decreased significantly in all the treatments after composting. While compared to the removal efficiency of total RA in the control (CK), PB decreased by 90.99 % and GB increased by 93.25 %, and both PB and GB removed MGEs completely. Sulfonamide antibiotic resistance genes were the main contributor of the ARGs rebounding. PB addition could hinder the rebounding of sulfonamide antibiotic resistance genes during the later stage of the composting. Co-occurrence network analysis showed that the addition of biochar (both types) increased the complexity of the microbial community the competition of inter-phylum, which was indicated by the higher number of edge and density and lower positive connection. The different ARGs removal efficiency in these two treatments might be that PB promoted the competition both inter-phylum and potential hosts-other microbes, resulted in fewer kinds and abundance of ARGs hosts, while GB increased the stability of ARGs hosts making it more resistant to environment changes. Totally, compared with the global adjustment strategy of microbial communities, more exclusive methods focusing on the controlling of ARGs hosts should be explored to decrease the ecological risk of composting products during composting process.
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Affiliation(s)
- Qiqi Fu
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, PR China
| | - Zhiqiang Chen
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, PR China
| | - Chengwu Zhu
- Beijing Municipal Constructure (Group) Co., Ltd, Beijing 100045, PR China
| | - Qinxue Wen
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, PR China.
| | - Huanyu Bao
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, PR China
| | - Yiqi Wu
- Research Institute of Standards and Norms, Ministry of Housing and Urban-Rural Development, Beijing 100835, China
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11
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Wang Z, Fu L, Gu JD, Deng S, Huang C, Luo L. The factors controlling antibiotic resistance genes in different treatment processes of mainstream full-scale wastewater treatment plants. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 900:165815. [PMID: 37506903 DOI: 10.1016/j.scitotenv.2023.165815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 07/22/2023] [Accepted: 07/24/2023] [Indexed: 07/30/2023]
Abstract
The alteration of antibiotic resistance genes (ARGs) in wastewater has been less studied in wastewater treatment plants (WWTPs), making it difficult to assess ARGs' spreading risk comprehensively. Therefore, this study investigated the distribution and reduction of ARGs in the main process (Anaerobic-Anoxic-Oxic with Membrane Bio-Reactor (A2/O + MBR), Oxidation Ditch with sedimentation (OD), and Cyclic Activated Sludge System (CASS) with sedimentation) and disinfection process (Ultra-violet and Chlorination) of full-scale WWTPs. The wastewater was sampled before and after the different main process and disinfection process; then, the diversity and abundance of ARGs and mobile genetic genes (MGEs, helping the horizontal transfer of ARGs) in wastewater of different treatment stages were determined by a real-time high-throughput quantitative PCR (HT-qPCR) system. It was found that similar influents would result in similar ARGs in wastewater samples, independent of the treatment processes used. The main process could effectively reduce the abundance of ARGs and MGEs by 1.80-2.12 and 1.46-2.18 logarithm units, respectively. The main factors affecting ARGs were mainly wastewater quality index, especially COD, and MGEs like transposase and insertion sequences which were significantly associated with 66 and 48 subtypes of ARGs, respectively. Moreover, disinfection was more effective than the main process in inactivating antibiotic resistance bacteria (ARB), and the removal rate of ARB by disinfection reached 43.53 %-100 %. However, there are still risks of ARB regeneration (up to 4.22 log units) in the effluent of WWTPs. In the future, nutrient removal and disinfection process improvement is necessary to benefit ARG and ARB removal.
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Affiliation(s)
- Zimu Wang
- College of Environmental Sciences, Sichuan Agricultural University, 211 Huimin Road, Chengdu 611130, PR China
| | - Li Fu
- College of Environmental Sciences, Sichuan Agricultural University, 211 Huimin Road, Chengdu 611130, PR China
| | - Ji-Dong Gu
- Environmental Science and Engineering, Guangdong Technion - Israel Institute of Technology, 241 Daxue Road, Shantou, Guangdong 515063, PR China
| | - Shihuai Deng
- College of Environmental Sciences, Sichuan Agricultural University, 211 Huimin Road, Chengdu 611130, PR China
| | - Chengyi Huang
- College of Environmental Sciences, Sichuan Agricultural University, 211 Huimin Road, Chengdu 611130, PR China
| | - Ling Luo
- College of Environmental Sciences, Sichuan Agricultural University, 211 Huimin Road, Chengdu 611130, PR China.
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12
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Li J, Lu H, Wang A, Wen X, Huang Y, Li Q. The fates of antibiotic resistance genes and their association with cell membrane permeability in response to peroxydisulfate during composting. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 344:118659. [PMID: 37478721 DOI: 10.1016/j.jenvman.2023.118659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Revised: 06/18/2023] [Accepted: 07/15/2023] [Indexed: 07/23/2023]
Abstract
The aims of this study were to use metagenomics to reveal the fates of antibiotic resistance genes (ARGs) during composting under the regulation of peroxydisulfate and clarify the relationship between ARGs and cell membrane permeability. Results showed that peroxydisulfate increased cell membrane permeability by effectively regulating the expression of outer membrane protein and lipopolysaccharide related genes. Besides, it reduced polysaccharides and proteins in extracellular polymer substances by 36% and 58%, respectively, making it easier for intracellular ARGs (i-ARGs) to reach the extracellular environment, among which the absolute intracellular abundance of mphK, Erm(31), and tet(44) decreased to 1.2, 1.0, and 0.89 fold of the control, respectively. Finally, variation partitioning analysis showed that i-ARGs dominated the removal of ARGs. These results revealed that the removal of i-ARGs by activated peroxydisulfate was the key to the removal of ARGs and increased cell membrane permeability played a key role for peroxydisulfate to remove i-ARGs during composting.
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Affiliation(s)
- Jixuan Li
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, China
| | - Heng Lu
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, China
| | - Ao Wang
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, China
| | - Xiaoli Wen
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, China
| | - Yite Huang
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, China
| | - Qunliang Li
- School of Chemistry and Chemical Engineering, Guangxi University, Nanning, 530004, China.
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13
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Lu Y, Pang L, Chatzisymeon E, Liu X, Xu K, Yang P, Gou M. Copper in different forms and tetracycline affect behavior and risk of antibiotic resistome in thermophilic anaerobic digestion of cattle manure. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:108162-108175. [PMID: 37749471 DOI: 10.1007/s11356-023-29923-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Accepted: 09/13/2023] [Indexed: 09/27/2023]
Abstract
The metagenomics-based behavior and risk of antibiotic resistance genes (ARGs) were investigated during cattle manure thermophilic anaerobic digestion with tetracycline and copper, namely, bulk-copper oxide, nano-copper oxide, and copper sulfate, which are common feed additives. Although bulk-copper oxide reduced ARGs' diversity, it enriched high-risk ARGs the most than the other two copper species, while copper sulfate could strongly mitigate the ARG risk by decreasing their abundances. Compared to corresponding individual effects, copper and tetracycline combinations may decrease ARGs' co-occurrence potential by 22.0%, and particularly, tetracycline combined separately with copper sulfate and nano-copper oxide reduces the ARGs' risk in abundance (by 7.2%) and human health (by 4.0%). These were mainly driven by bioavailable copper, volatile fatty acids, and pH, as well as the main potential hosts in phyla Firmicutes, Coprothermobacterota, and Euryarchaeota. Notably, the twin risks of pathogenicity and ARGs should be emphasized due to the ARGs' positive correlation with human pathogens of Clostridioides difficile and Arcobacter peruensis. These findings are important for understanding the potential ARGs' risk in treatments of livestock wastes containing feed additives of different sizes and speciation.
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Affiliation(s)
- Yuanyuan Lu
- College of Architecture and Environment, Sichuan University, Chengdu, 610065, China
| | - Lina Pang
- College of Architecture and Environment, Sichuan University, Chengdu, 610065, China.
| | - Efthalia Chatzisymeon
- School of Engineering, Institute for Infrastructure and Environment, The University of Edinburgh, Edinburgh, EH9 3JL, UK
| | - Xuna Liu
- College of Architecture and Environment, Sichuan University, Chengdu, 610065, China
| | - Kailin Xu
- College of Architecture and Environment, Sichuan University, Chengdu, 610065, China
| | - Ping Yang
- College of Architecture and Environment, Sichuan University, Chengdu, 610065, China
| | - Min Gou
- College of Architecture and Environment, Sichuan University, Chengdu, 610065, China
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14
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Liu H, Shi B, Liu W, Wang L, Zhu L, Wang J, Kim YM, Wang J. Effects of magnesium-modified biochar on antibiotic resistance genes and microbial communities in chicken manure composting. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:108553-108564. [PMID: 37752398 DOI: 10.1007/s11356-023-29804-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Accepted: 09/06/2023] [Indexed: 09/28/2023]
Abstract
Abatement of antibiotic resistance genes (ARGs) in livestock manure by composting has attracted attention. This study investigated the effect of adding magnesium-modified biochar (MBC) on ARGs and microbial communities in chicken manure composting. Twelve genes for tetracyclines, sulfonamides, and macrolides, and mobile genetic elements were measured in the compost pile. The results showed that after 45 days of the composting, the treatment groups of MBC had longer high temperature periods, significantly higher germination indices (GI) and lower phytotoxicity. There were four major dominant phyla (Firmicutes, Actinobacteriota, Proteobacteria, and Bacteroidota) in the compost. The abundance of Firmicutes decreased significantly during the compost cooling period; tetracycline resistance genes demonstrated an extremely significant positive correlation with Firmicutes, showing a trend of the same increase and decrease with composting time; tetT, tetO, tetM, tetW, ermB, and intI2 were reduced in the MBC group; the total abundance of resistance genes in the 2% MBC addition group was 0.67 times that of the control; Proteobacteria and Chloroflexi were also significantly lower than the other treatment groups. Most ARGs were significantly associated with mobile genetic elements (MGEs); MBC can reduce the spread and diffusion of ARGs by reducing the abundance of MGEs and inhibiting horizontal gene transfer (HGT).
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Affiliation(s)
- Hunan Liu
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China
| | - Baihui Shi
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China
| | - Wenwen Liu
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China
| | - Lanjun Wang
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China
| | - Lusheng Zhu
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China
| | - Jun Wang
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China
| | - Young Mo Kim
- Department of Civil and Environmental Engineering, Hanyang University, Seongdong-Gu, Seoul, 04763, Republic of Korea
| | - Jinhua Wang
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, Key Laboratory of Agricultural Environment in Universities of Shandong, College of Resources and Environment, Shandong Agricultural University, 61 Daizong Road, Taian, 271018, China.
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15
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Xiang Q, Fu CX, Lu CY, Sun AQ, Chen QL, Qiao M. Flooding drives the temporal turnover of antibiotic resistance gene in manure-amended soil-water continuum. ENVIRONMENT INTERNATIONAL 2023; 179:108168. [PMID: 37647704 DOI: 10.1016/j.envint.2023.108168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 08/09/2023] [Accepted: 08/22/2023] [Indexed: 09/01/2023]
Abstract
Rice paddy soil is a hotspot of antibiotic resistance genes (ARGs) due to the application of organic fertilizers. However, the temporal dynamics of ARGs in rice paddy soil and its flooded water during the growing season remain underexplored. In this study, a microcosm experiment was conducted to explore the ARG profiles in a long term (130 days) flooded two-phase manure-amended soil-water system. By using high-throughput quantitative PCR array, a total of 23-98 and 34-85 ARGs were detected in the soil and overlying water, respectively. Regression analysis exhibited significant negative correlations between ARG profile similarities and flooding duration, indicating that flooding significantly altered the resistome (P < 0.001). This finding was validated by the increased ARG abundance in the soil and the overlying water, for example, after 130 days flooding, the abundance of ARGs in CK soil was increased from 0.03 to 1.20 copies per 16S rRNA. The PCoA analysis further suggested pig manure application resulted in distinct ARG profiles in the soil-water continuum compared with those of the non-amended control (Adonis, P < 0.05). The Venn diagram showed that all ARGs detected in the pig manure were present in the treated soil. Twelve ARGs (e.g., sul1) were shared among the pig manure, manure-amended soil, and overlying water, indicating that certain manure- or soil-borne ARGs were readily dispersed from the soil to the overlying water. Moreover, the enhanced relationships between the ARGs and mobile genetic elements in pig manure applied soil-water continuum indicate that the application of organic matter could accelerate the emergence and dissemination of ARGs. These findings suggested that flooding represents a crucial pathway for dispersal of ARGs from the soil to the overlying water. Identification of highly mobile ARGs in the soil-water continuum is essential for assessing their potential risk to human health and promoting the development of sustainable agricultural practices to mitigate their spread.
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Affiliation(s)
- Qian Xiang
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, China
| | - Chen-Xi Fu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Chang-Yi Lu
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, China
| | - An-Qi Sun
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, China
| | - Qing-Lin Chen
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo 315830, China.
| | - Min Qiao
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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16
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Fan Q, Zhang J, Shi H, Chang S, Hou F. Metagenomic Profiles of Yak and Cattle Manure Resistomes in Different Feeding Patterns before and after Composting. Appl Environ Microbiol 2023; 89:e0064523. [PMID: 37409977 PMCID: PMC10370317 DOI: 10.1128/aem.00645-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Accepted: 06/04/2023] [Indexed: 07/07/2023] Open
Abstract
Antibiotic resistance is a global threat to public health, with antibiotic resistance genes (ARGs) being one of the emerging contaminants; furthermore, animal manure is an important reservoir of biocide resistance genes (BRGs) and metal resistance genes (MRGs). However, few studies have reported differences in the abundance and diversity of BRGs and MRGs between different types of animal manure and the changes in BRGs and MRGs before and after composting. This study employed a metagenomics-based approach to investigate ARGs, BRGs, MRGs, and mobile genetic elements (MGEs) of yak and cattle manure before and after composting under grazing and intensive feeding patterns. The total abundances of ARGs, clinical ARGs, BRGs, MRGs, and MGEs were lower in the manure of grazing livestock than in the manure of the intensively fed group. After composting, the total abundances of ARGs, clinical ARGs, and MGEs in intensively fed livestock manure decreased, whereas those of ARGs, clinical ARGs, MRGs, and MGEs increased in grazing livestock manure. The synergy between MGEs mediated horizontal gene transfer and vertical gene transmission via host bacteria proliferation, which was the main driver that altered the abundance and diversity of ARGs, BRGs, and MRGs in livestock manure and compost. Additionally, tetQ, IS91, mdtF, and fabK were potential indicators for estimating the total abundance of clinical ARGs, BRGs, MRGs, and MGEs in livestock manure and compost. These findings suggest that grazing livestock manure can be directly discharged into the fields, whereas intensively fed livestock manure should be composted before returning to the field. IMPORTANCE The recent increase in the prevalence of antibiotic resistance genes (ARGs), biocide resistance genes (BRGs), and metal resistance genes (MRGs) in livestock manure poses risks to human health. Composting is known to be a promising technology for reducing the abundance of resistance genes. This study investigated the differences and changes in the abundances of ARGs, BRGs, and MRGs between yak and cattle manure under grazing and intensive feeding patterns before and after composting. The results indicate that the feeding pattern significantly affected the abundances of resistance genes in livestock manure. Manure in intensive farming should be composted before being discharged into the field, while grazing livestock manure is not suitable for composting due to an increased number of resistance genes.
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Affiliation(s)
- Qingshan Fan
- State Key Laboratory of Grassland Agro-ecosystems, Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China
| | - Jing Zhang
- State Key Laboratory of Grassland Agro-ecosystems, Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China
| | - Hairen Shi
- State Key Laboratory of Grassland Agro-ecosystems, Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China
| | - Shenghua Chang
- State Key Laboratory of Grassland Agro-ecosystems, Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China
| | - Fujiang Hou
- State Key Laboratory of Grassland Agro-ecosystems, Key Laboratory of Grassland Livestock Industry Innovation, Ministry of Agriculture, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China
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17
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Zhao Z, Yu C, Yang C, Gao B, Jiménez N, Wang C, Li F, Ao Y, Zheng L, Huang F, Tomberlin JK, Ren Z, Yu Z, Zhang J, Cai M. Mitigation of antibiotic resistome in swine manure by black soldier fly larval conversion combined with composting. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 879:163065. [PMID: 36966826 DOI: 10.1016/j.scitotenv.2023.163065] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 03/20/2023] [Accepted: 03/21/2023] [Indexed: 05/17/2023]
Abstract
The increasing prevalence of antibiotic resistance genes (ARGs) in animal manure has attracted considerable attention because of their potential contribution to the development of multidrug resistance worldwide. Insect technology may be a promising alternative for the rapid attenuation of ARGs in manure; however, the underlying mechanism remains unclear. This study aimed to evaluate the effects of black soldier fly (BSF, Hermetia illucens [L.]) larvae conversion combined with composting on ARGs dynamics in swine manure and to uncover the mechanisms through metagenomic analysis. Compared to natural composting (i.e. without BSF), BSFL conversion combined with composting reduced the absolute abundance of ARGs by 93.2 % within 28 days. The rapid degradation of antibiotics and nutrient reformulation during BSFL conversion combined with composting indirectly altered manure bacterial communities, resulting in a lower abundance and richness of ARGs. The number of main antibiotic-resistant bacteria (e.g., Prevotella, Ruminococcus) decreased by 74.9 %, while their potential antagonistic bacteria (e.g., Bacillus, Pseudomonas) increased by 128.7 %. The number of antibiotic-resistant pathogenic bacteria (e.g., Selenomonas, Paenalcaligenes) decreased by 88.3 %, and the average number of ARGs carried by each human pathogenic bacterial genus declined by 55.8 %. BSF larvae gut microbiota (e.g., Clostridium butyricum, C. bornimense) could help reduce the risk of multidrug-resistant pathogens. These results provide insight into a novel approach to mitigate multidrug resistance from the animal industry in the environment by using insect technology combined with composting, in particular in light of the global "One Health" requirements.
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Affiliation(s)
- Zhengzheng Zhao
- State Key Laboratory of Agricultural Microbiology, National Engineering Research Center of Microbial Pesticides, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, Hubei, China
| | - Chan Yu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan 430062, China
| | - Chongrui Yang
- State Key Laboratory of Agricultural Microbiology, National Engineering Research Center of Microbial Pesticides, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, Hubei, China
| | - Bingqi Gao
- State Key Laboratory of Agricultural Microbiology, National Engineering Research Center of Microbial Pesticides, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, Hubei, China
| | - Núria Jiménez
- Department of Chemical Engineering, Vilanova i la Geltrú School of Engineering (EPSEVG), Universitat Politècnica de Catalunya · BarcelonaTech, Vilanova i la Geltrú 08800, Spain
| | - Chen Wang
- State Key Laboratory of Agricultural Microbiology, National Engineering Research Center of Microbial Pesticides, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, Hubei, China
| | - Fang Li
- State Key Laboratory of Agricultural Microbiology, National Engineering Research Center of Microbial Pesticides, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, Hubei, China
| | - Yue Ao
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan 430062, China
| | - Longyu Zheng
- State Key Laboratory of Agricultural Microbiology, National Engineering Research Center of Microbial Pesticides, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, Hubei, China
| | - Feng Huang
- State Key Laboratory of Agricultural Microbiology, National Engineering Research Center of Microbial Pesticides, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, Hubei, China
| | | | - Zhuqing Ren
- Hubei Hongshan Laboratory, Wuhan 430070, Hubei, China; Key Laboratory of Agriculture Animal Genetics, Breeding and Reproduction of the Ministry of Education, College of Animal Science, Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Ziniu Yu
- State Key Laboratory of Agricultural Microbiology, National Engineering Research Center of Microbial Pesticides, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, Hubei, China
| | - Jibin Zhang
- State Key Laboratory of Agricultural Microbiology, National Engineering Research Center of Microbial Pesticides, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, Hubei, China
| | - Minmin Cai
- State Key Laboratory of Agricultural Microbiology, National Engineering Research Center of Microbial Pesticides, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; Hubei Hongshan Laboratory, Wuhan 430070, Hubei, China.
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18
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Li Y, Kumar Awasthi M, Sindhu R, Binod P, Zhang Z, Taherzadeh MJ. Biochar preparation and evaluation of its effect in composting mechanism: A review. BIORESOURCE TECHNOLOGY 2023; 384:129329. [PMID: 37329992 DOI: 10.1016/j.biortech.2023.129329] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Revised: 06/08/2023] [Accepted: 06/12/2023] [Indexed: 06/19/2023]
Abstract
This article provides an overview of biochar application for organic waste co-composting and its biochemical transformation mechanism. As a composting amendment, biochar work in the adsorption of nutrients, the retention of oxygen and water, and the promotion of electron transfer. These functions serve the micro-organisms (physical support of niche) and determine changes in community structure beyond the succession of composing primary microorganisms. Biochar mediates resistance genes, mobile gene elements, and biochemical metabolic activities of organic matter degrading. The participation of biochar enriched the α-diversity of microbial communities at all stages of composting, and ultimately reflects the high γ-diversity. Finally, easy and convincing biochar preparation methods and characteristic need to be explored, in turn, the mechanism of biochar on composting microbes at the microscopic level can be studied in depth.
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Affiliation(s)
- Yui Li
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
| | - Mukesh Kumar Awasthi
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China.
| | - Raveendran Sindhu
- Department of Food Technology, TKM Institute of Technology, Kollam 691 505, Kerala, India
| | - Parameswaran Binod
- Microbial Processes and Technology Division, CSIR-National Institute for Interdisciplinary Science and Technology (CSIR-NIIST), Thiruvananthapuram, Kerala 695019, India
| | - Zengqiang Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, Shaanxi Province 712100, PR China
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Bao H, Wang J, Chen Z, Wen Q, Wu Y, Fu Q. Simultaneous passivation of heavy metals and removal of antibiotic resistance genes by calcium peroxide addition during sewage sludge composting. BIORESOURCE TECHNOLOGY 2023:129267. [PMID: 37271461 DOI: 10.1016/j.biortech.2023.129267] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Revised: 05/27/2023] [Accepted: 05/30/2023] [Indexed: 06/06/2023]
Abstract
This research evaluated the effects of calcium peroxide (CP) at 0% (CK, w/w), 5% (T1, w/w), and 10% (T2, w/w), on heavy metals (HMs) mobility and prevalence of antibiotic resistance genes (ARGs) during sludge composting. T1 and T2 significantly reduced (p < 0.05) the mobility of Cu (29.34%, and 32.94%, respectively), Ni (24.07%, and 31.48%, respectively) and Zn (33.28%, and 54.11%, respectively) compared to CK after the composting. CP addition resulted in a decrease in mobile genetic elements (MGEs) and ARGs during composting. Together with structural equation model and random forest analysis depicted MGEs had a primary association with total ARGs variations during composting. Microbial analysis indicated CP downregulated the expression of the genes associated with two-component and type IV secretion system, thus reducing the prevalence of ARGs. This study demonstrates that application of CP is a feasible strategy to mitigate both ARGs and HMs hazards during composting.
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Affiliation(s)
- Huanyu Bao
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, PR China; School of Environment, Harbin Institute of Technology, Harbin 150090, PR China
| | - Jiuhua Wang
- School of Environment, Harbin Institute of Technology, Harbin 150090, PR China
| | - Zhiqiang Chen
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, PR China; School of Environment, Harbin Institute of Technology, Harbin 150090, PR China
| | - Qinxue Wen
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, PR China; School of Environment, Harbin Institute of Technology, Harbin 150090, PR China.
| | - Yiqi Wu
- Research Institute of Standards and Norms, Ministry of Housing and Urban-Rural Development, Beijing 100835, PR China
| | - Qiqi Fu
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, PR China; School of Environment, Harbin Institute of Technology, Harbin 150090, PR China
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20
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Zhang H, Zhang X, Chen M, Deng X, Pei Y, Zhang J, Chen H, Yang S. Biochar Can Improve Absorption of Nitrogen in Chicken Manure by Black Soldier Fly. Life (Basel) 2023; 13:life13040938. [PMID: 37109467 PMCID: PMC10144396 DOI: 10.3390/life13040938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 02/26/2023] [Accepted: 03/29/2023] [Indexed: 04/07/2023] Open
Abstract
(1) Background: There is growing interest in using insects to treat nutrient-rich organic wastes, such as the black soldier fly (BSF), one of the most efficient organic waste recyclers for upcycling nutrients into the food system. Although biochar (BC) was shown to enhance nutrient retention and the final product quality during the composting of livestock and poultry manure in many previous studies, little information is available on the effect of BC on livestock manure bioconversion by black soldier fly larvae (BSFL). (2) Methods: This study investigated the effect of adding a small amount of BC to chicken manure (CM) on the bioconversion system of the black soldier fly (including N2O and NH3 emissions and the final distribution of nitrogen during the treatment process). (3) Results: The lowest N2O and NH3 emission and highest residual nitrogen in the substrate were observed in the 15% BC treatment. The highest bioconversion rate of CM (8.31%) and the peak of larval biomass was obtained in the 5% BC treatment. (4) Conclusions: The results demonstrate the feasibility of adding 5% BC to reduce pollution and achieve a satisfactory BSFL-based CM bioconversion efficiency.
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Affiliation(s)
- Haixu Zhang
- Department of Microbiology, College of Life Sciences, Henan Agricultural University, Key Laboratory of Agricultural Microbial Enzyme Engineering (Ministry of Agriculture), Zhengzhou 450002, China
| | - Xilu Zhang
- Department of Microbiology, College of Life Sciences, Henan Agricultural University, Key Laboratory of Agricultural Microbial Enzyme Engineering (Ministry of Agriculture), Zhengzhou 450002, China
| | - Mengxiao Chen
- Department of Microbiology, College of Life Sciences, Henan Agricultural University, Key Laboratory of Agricultural Microbial Enzyme Engineering (Ministry of Agriculture), Zhengzhou 450002, China
| | - Xin Deng
- Department of Microbiology, College of Life Sciences, Henan Agricultural University, Key Laboratory of Agricultural Microbial Enzyme Engineering (Ministry of Agriculture), Zhengzhou 450002, China
| | - Yaxin Pei
- Department of Microbiology, College of Life Sciences, Henan Agricultural University, Key Laboratory of Agricultural Microbial Enzyme Engineering (Ministry of Agriculture), Zhengzhou 450002, China
| | - Jiran Zhang
- Department of Microbiology, College of Life Sciences, Henan Agricultural University, Key Laboratory of Agricultural Microbial Enzyme Engineering (Ministry of Agriculture), Zhengzhou 450002, China
| | - Hongge Chen
- Department of Microbiology, College of Life Sciences, Henan Agricultural University, Key Laboratory of Agricultural Microbial Enzyme Engineering (Ministry of Agriculture), Zhengzhou 450002, China
| | - Sen Yang
- Department of Microbiology, College of Life Sciences, Henan Agricultural University, Key Laboratory of Agricultural Microbial Enzyme Engineering (Ministry of Agriculture), Zhengzhou 450002, China
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21
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Aydın Temel F. Evaluation of the influence of rice husk amendment on compost quality in the composting of sewage sludge. BIORESOURCE TECHNOLOGY 2023; 373:128748. [PMID: 36791979 DOI: 10.1016/j.biortech.2023.128748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Revised: 02/09/2023] [Accepted: 02/11/2023] [Indexed: 06/18/2023]
Abstract
This study aimed to evaluate the influence of rice husk addition on compost quality and maturity in sewage sludge composting using a pilot scale aerated in-vessel reactor. During the composting process, changes in compost quality and physicochemical factors including pH, temperature, moisture content, electrical conductivity, total organic carbon (TOC), total nitrogen (TN), and carbon to nitrogen ratio (C/N) were monitored. In the pile containing 25% rice husk, the lowest losses occurred with 52.49% for TOC and 23.24% for TN, while C/N ratio in the final compost was 18.82, achieving mature and quality compost. The moisture contents of the final composts were found as 50.72% in the control group while it was 31.73% and 28.18% in the reactors containing 10% and 25% rice husk, respectively. These results suggested that rice husk addition was beneficial for reducing moisture content and balancing the C/N ratio in sewage sludge composting.
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Affiliation(s)
- Fulya Aydın Temel
- Giresun University, Faculty of Engineering, Department of Environmental Engineering, Giresun 28200, Turkey
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22
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Li B, Jeon MK, Li X, Yan T. Differential impacts of salinity on antibiotic resistance genes during cattle manure stockpiling are linked to mobility potentials revealed by metagenomic sequencing. JOURNAL OF HAZARDOUS MATERIALS 2023; 445:130590. [PMID: 37055994 DOI: 10.1016/j.jhazmat.2022.130590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Revised: 11/09/2022] [Accepted: 12/08/2022] [Indexed: 06/19/2023]
Abstract
Livestock manure is an important source of antibiotic resistance genes (ARGs), and its salinity level can change during stockpiling. To understand how the salinity changes affect the fate of ARGs, cattle manure was adjusted of salinity and stockpiled in laboratory microcosms at low (0.3% salt), moderate (3.0%) and high salinity levels (10.0%) for 44 days. Amongst the five ARGs (tetO, blaTEM, sul1, tetM, and ermB) and the first-class integrase (intI1) monitored by qPCR, the relative abundance of tetO and blaTEM exhibited no clear trend in response to salinity levels, while that of sul1, tetM, ermB and intI1 showed clear downward trends over time at the lower salinity levels (0.3% and 3%) but not at the high salinity level (10%). Metagenomic contig construction of cattle manure samples revealed that sul1, tetM and ermB genes were more likely to associate with mobile genetic elements (MGEs) than tetO and blaTEM, suggesting that their slower decay at higher salinity levels was either caused by horizontal gene transfer or co-selection of ARGs and osmotic stress resistant determinants. Further analysis of metagenomic contigs showed that osmotic stress resistance can also be located on MGEs or in conjunction with ARGs.
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Affiliation(s)
- Bo Li
- Department of Civil and Environmental Engineering, Water Resources Research Center, University of Hawaii at Manoa, Honolulu, HI 96822, United States
| | - Min Ki Jeon
- Department of Civil and Environmental Engineering, Water Resources Research Center, University of Hawaii at Manoa, Honolulu, HI 96822, United States
| | - Xu Li
- Department of Civil and Environmental Engineering, University of Nebraska-Lincoln, Lincoln, NE 68588, United States
| | - Tao Yan
- Department of Civil and Environmental Engineering, Water Resources Research Center, University of Hawaii at Manoa, Honolulu, HI 96822, United States; Water Resources Research Center, University of Hawaii at Manoa, Honolulu, HI 96822, United States.
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23
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He Y, Yin X, Li F, Wu B, Zhu L, Ge D, Wang N, Chen A, Zhang L, Yan B, Huang H, Luo L, Wu G, Zhang J. Response characteristics of antibiotic resistance genes and bacterial communities during agricultural waste composting: Focusing on biogas residue combined with biochar amendments. BIORESOURCE TECHNOLOGY 2023; 372:128636. [PMID: 36657587 DOI: 10.1016/j.biortech.2023.128636] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 01/11/2023] [Accepted: 01/14/2023] [Indexed: 06/17/2023]
Abstract
This research investigated biogas residue and biochar addition on antibiotic resistance genes (ARGs), mobile genetic elements (MGEs), and changes in bacterial community during agricultural waste composting. Sequencing technique investigated bacterial community structure and ARGs, MGEs changes. Correlations among physicochemical factors, ARGs, MGEs, and bacterial community structure were determined using redundancy analysis. Results confirmed that biochar and biogas residue amendments effectively lowered the contents of ARGs and MGEs. The main ARGs detected was sul1. Proteobacteria and Firmicutes were the main host bacteria strongly associated with the dissemination of ARGs. The dynamic characteristics of the bacterial community were strongly correlated with pile temperature and pH (P < 0.05). Redundancy and network analysis revealed that nitrate, intI1, and Firmicutes mainly affected the in ARGs changes. Therefore, regulating these key variables would effectively suppress the ARGs spread and risk of compost use.
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Affiliation(s)
- Yuewei He
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, Hunan, China
| | - Xiaowei Yin
- POWERCHINA Zhongnan Engineering Corporation Limited, Changsha 410014, Hunan, China
| | - Fanghong Li
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, Hunan, China; South China Institute of Environmental Sciences, Ministry of Ecology and Environment of the PR China, Guangzhou 510655, China
| | - Bo Wu
- POWERCHINA Zhongnan Engineering Corporation Limited, Changsha 410014, Hunan, China
| | - Ling Zhu
- POWERCHINA Zhongnan Engineering Corporation Limited, Changsha 410014, Hunan, China
| | - Dabing Ge
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, Hunan, China
| | - Nanyi Wang
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, Hunan, China
| | - Anwei Chen
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, Hunan, China
| | - Lihua Zhang
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, Hunan, China
| | - Binghua Yan
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, Hunan, China
| | - Hongli Huang
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, Hunan, China
| | - Lin Luo
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, Hunan, China
| | - Genyi Wu
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, Hunan, China
| | - Jiachao Zhang
- College of Resources and Environment, Hunan Agricultural University, Changsha 410128, Hunan, China; POWERCHINA Zhongnan Engineering Corporation Limited, Changsha 410014, Hunan, China; Yuelu Mountain Laboratory, Hunan Agricultural University Area, Changsha 410000, Hunan, China.
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24
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Jan R, Asif S, Asaf S, Du XX, Park JR, Nari K, Bhatta D, Lee IJ, Kim KM. Melatonin alleviates arsenic (As) toxicity in rice plants via modulating antioxidant defense system and secondary metabolites and reducing oxidative stress. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 318:120868. [PMID: 36526054 DOI: 10.1016/j.envpol.2022.120868] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2022] [Revised: 11/29/2022] [Accepted: 12/12/2022] [Indexed: 06/17/2023]
Abstract
The Arsenic (As) load on the environment has increased immensely due to large-scale industrial and agricultural uses of As in several synthetic products, such as fertilizers, herbicides, and pesticides. Melatonin is a plant hormone that has a key role in abiotic stress inhibition, but the mechanism of resilience to As stress remains unexplored in rice plants. In this study, we determined how As affects rice plant and how melatonin facilitate As stress tolerance in rice. Here we investigated that, exogenous melatonin reduced As stress by inducing anthocyanin biosynthesis. Melatonin induced the expression of anthocyanin biosynthesis genes such as PAL, CHS, CHI, F3H, DFR, and ANS, which resulted in 1659% and 389% increases in cyanidin and delphinidin, respectively. Similarly, melatonin application significantly induced SA and ABA accumulation in response to As stress in rice plant. Application of melatonin also significantly reduced expression of PT-2 and PT-8 (transporter genes) and reduced uptake of As and its translocation to other compartments. Melatonin and As analysis revealed that melatonin application significantly reduced As contents in the melatonin-supplemented plants, suggesting that As uptake is largely dependent on either the melatonin basal level or anthocyanin in rice plants. In this study, we investigated new symptoms on leaves, which can severely damage leaves and impair photosynthesis. However, anthocyanin as a chelating agent, detoxifies As in vacuole and reduces oxidative stress induced by As.
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Affiliation(s)
- Rahmatullah Jan
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Daegu, 41566, South Korea; Coastal Agriculture Research Institute, Kyungpook National University, Daegu, 41566, South Korea
| | - Saleem Asif
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Daegu, 41566, South Korea
| | - Sajjad Asaf
- Natural and Medical Science Research Center, University of Nizwa, Nizwa, Oman
| | - Xiao-Xuan Du
- Biosafty Division, National Academy of Agriculture Science, Rural Development, Administration, Jeonju, 54874, South Korea
| | - Jae-Ryoung Park
- Crop Breeding Division, National Institute of Crop Science, Rural Development Administration, Wanju, 55365, South Korea
| | - Kim Nari
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Daegu, 41566, South Korea
| | - Dibya Bhatta
- Department of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
| | - In-Jung Lee
- Department of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
| | - Kyung-Min Kim
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Daegu, 41566, South Korea; Coastal Agriculture Research Institute, Kyungpook National University, Daegu, 41566, South Korea.
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25
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Aydın Temel F, Cagcag Yolcu O, Turan NG. Artificial intelligence and machine learning approaches in composting process: A review. BIORESOURCE TECHNOLOGY 2023; 370:128539. [PMID: 36608858 DOI: 10.1016/j.biortech.2022.128539] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2022] [Revised: 12/22/2022] [Accepted: 12/24/2022] [Indexed: 06/17/2023]
Abstract
Studies on developing strategies to predict the stability and performance of the composting process have increased in recent years. Machine learning (ML) has focused on process optimization, prediction of missing data, detection of non-conformities, and managing complex variables. This review investigates the perspectives and challenges of ML and its important algorithms such as Artificial Neural Networks (ANNs), Random Forest (RF), Adaptive-network-based fuzzy inference systems (ANFIS), Support Vector Machines (SVMs), and Deep Neural Networks (DNNs) used in the composting process. In addition, the individual shortcomings and inadequacies of the metrics, which were used as error or performance criteria in the studies, were emphasized. Except for a few studies, it was concluded that Artificial Intelligence (AI) algorithms such as Genetic algorithm (GA), Differential Evaluation Algorithm (DEA), and Particle Swarm Optimization (PSO) were not used in the optimization of the model parameters, but in the optimization of the parameters of the ML algorithms.
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Affiliation(s)
- Fulya Aydın Temel
- Department of Environmental Engineering, Faculty of Engineering, Giresun University, Giresun 28200, Turkey
| | - Ozge Cagcag Yolcu
- Department of Statistics, Faculty of Sciences and Arts, Marmara University, İstanbul 34722, Turkey
| | - Nurdan Gamze Turan
- Department of Environmental Engineering, Faculty of Engineering, Ondokuz Mayıs University, Samsun 55200, Turkey
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Fate of Horizontal-Gene-Transfer Markers and Beta-Lactamase Genes during Thermophilic Composting of Human Excreta. Microorganisms 2023; 11:microorganisms11020308. [PMID: 36838273 PMCID: PMC9958827 DOI: 10.3390/microorganisms11020308] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 01/17/2023] [Accepted: 01/22/2023] [Indexed: 01/26/2023] Open
Abstract
Thermophilic composting is a suitable treatment for the recycling of organic wastes for agriculture. However, using human excreta as feedstock for composting raises concerns about antibiotic resistances. We analyzed samples from the start and end of a thermophilic composting trial of human excreta, together with green cuttings and straw, with and without biochar. Beta-lactamase genes blaCTX-M, blaIMP, and blaTEM conferring resistance to broad-spectrum beta-lactam antibiotics, as well as horizontal gene transfer marker genes, intI1 and korB, were quantified using qPCR. We found low concentrations of the beta-lactamase genes in all samples, with non-significant mean decreases in blaCTX-M and blaTEM copy numbers and a mean increase in blaIMP copy numbers. The decrease in both intI1 and korB genes from start to end of composting indicated that thermophilic composting can decrease the horizontal spread of resistance genes. Thus, thermophilic composting can be a suitable treatment for the recycling of human excreta.
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Jauregi L, González A, Garbisu C, Epelde L. Organic amendment treatments for antimicrobial resistance and mobile element genes risk reduction in soil-crop systems. Sci Rep 2023; 13:863. [PMID: 36650207 PMCID: PMC9845208 DOI: 10.1038/s41598-023-27840-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Accepted: 01/06/2023] [Indexed: 01/19/2023] Open
Abstract
Agricultural fertilization with organic amendments of animal origin often leads to antibiotic resistance dissemination. In this study, we evaluated the effect of different treatments (anaerobic digestion, biochar application, ozonation, zerovalent iron nanoparticle application, and spent mushroom substrate addition) on the resistome in dairy cow manure-derived amendments (slurry, manure, and compost). Anaerobic digestion and biochar application resulted in the highest reduction in antibiotic resistance gene (ARG) and mobile genetic element (MGE) gene abundance. These two treatments were applied to cow manure compost, which was then used to fertilize the soil for lettuce growth. After crop harvest, ARG and MGE gene absolute and relative abundances in the soil and lettuce samples were determined by droplet digital PCR and high-throughput qPCR, respectively. Prokaryotic diversity in cow manure-amended soils was determined using 16S rRNA metabarcoding. Compared to untreated compost, anaerobic digestion led to a 38% and 83% reduction in sul2 and intl1 absolute abundances in the soil, respectively, while biochar led to a 60% reduction in intl1 absolute abundance. No differences in lettuce gene abundances were observed among treatments. We conclude that amendment treatments can minimize the risk of antibiotic resistance in agroecosystems.
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Affiliation(s)
- Leire Jauregi
- NEIKER - Basque Institute of Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Parque Científico y Tecnológico de Bizkaia, P812, 48160, Derio, Spain.
| | - Aitor González
- NEIKER - Basque Institute of Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Parque Científico y Tecnológico de Bizkaia, P812, 48160, Derio, Spain
| | - Carlos Garbisu
- NEIKER - Basque Institute of Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Parque Científico y Tecnológico de Bizkaia, P812, 48160, Derio, Spain
| | - Lur Epelde
- NEIKER - Basque Institute of Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Parque Científico y Tecnológico de Bizkaia, P812, 48160, Derio, Spain
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28
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Liang S, Wang SN, Zhou LL, Sun S, Zhang J, Zhuang LL. Combination of Biochar and Functional Bacteria Drives the Ecological Improvement of Saline-Alkali Soil. PLANTS (BASEL, SWITZERLAND) 2023; 12:284. [PMID: 36678996 PMCID: PMC9864812 DOI: 10.3390/plants12020284] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 01/04/2023] [Accepted: 01/06/2023] [Indexed: 06/17/2023]
Abstract
The addition of functional bacteria (FB) is low-cost and is widely applied in saline-alkali soil remediation, which may gradually become ineffective due to inter-specific competition with indigenous bacteria. To improve the adaptability of FB, the target FB strains were isolated from local saline-alkali soil, and the combined effects of FB and biochar were explored. The results showed that FB isolated from local soil showed better growth than the purchased strains under high saline-alkali conditions. However, the indigenous community still weakened the function of added FB. Biochar addition provided a specific niche and increased the relative abundance of FB, especially for Proteobacteria and Bacteroidota. As a result, the co-addition of 10% biochar and FB significantly increased the soil available phosphorus (AP) by 74.85% and available nitrogen (AN) by 114.53%. Zea Mays's growth (in terms of height) was enhanced by 87.92% due to the decreased salinity stress and extra nutrients provided.
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Affiliation(s)
- Shuang Liang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao 266237, China
| | - Sheng-Nan Wang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao 266237, China
| | - Lu-Lu Zhou
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao 266237, China
| | - Shuo Sun
- Baiyangdian Basin Eco-environmental Support Center, Shijiazhuang 050000, China
| | - Jian Zhang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao 266237, China
- College of Safety and Environmental Engineering, Shandong University of Science and Technology, Qingdao 266590, China
| | - Lin-Lan Zhuang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science & Engineering, Shandong University, Qingdao 266237, China
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29
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Wang C, Wang Y, Yan S, Li Y, Zhang P, Ren P, Wang M, Kuang S. Biochar-amended composting of lincomycin fermentation dregs promoted microbial metabolism and reduced antibiotic resistance genes. BIORESOURCE TECHNOLOGY 2023; 367:128253. [PMID: 36334868 DOI: 10.1016/j.biortech.2022.128253] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Revised: 10/26/2022] [Accepted: 10/28/2022] [Indexed: 06/16/2023]
Abstract
Improper disposal of antibiotic fermentation dregs poses a risk of releasing antibiotics and antibiotic resistant bacteria to the environment. Therefore, this study evaluated the effects of biochar addition to lincomycin fermentation dregs (LFDs) composting. Biochar increased compost temperature and enhanced organic matter decomposition and residual antibiotics removal. Moreover, a 1.5- to 17.0-fold reduction in antibiotic resistance genes (ARGs) and mobile genetic elements (MGEs) was observed. Adding biochar also reduced the abundances of persistent ARGs hosts (e.g., Streptomyces, Pseudomonas) and ARG-related metabolic pathways and genes (e.g., ATP-binding cassette type-2 transport, signal transduction and multidrug efflux pump genes). By contrast, compost decomposition improved due to enhanced metabolism of carbohydrates and amino acids. Overall, adding biochar into LFDs compost reduced the proliferation of ARGs and enhanced microbial community metabolism. These results demonstrate that adding biochar to LFDs compost is a simple and efficient way to decrease risks associated with LFDs composting.
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Affiliation(s)
- Chenhao Wang
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao 266042, China
| | - Yafei Wang
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao 266042, China
| | - Shen Yan
- Staff Development Institute of China National Tobacco Corporation, Zhengzhou 450000, China
| | - Yingchun Li
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao 266042, China
| | - Peng Zhang
- Heilongjiang Lianshun Biotechnology Co. Ltd., Qitaihe 154264, China
| | - Peng Ren
- Qingdao National Laboratory for Marine Science and Technology, Qingdao 266061, China
| | - Mengmeng Wang
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao 266042, China.
| | - Shaoping Kuang
- College of Environment and Safety Engineering, Qingdao University of Science and Technology, Qingdao 266042, China
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Xiang Y, Zhou Y, Yao B, Sun Y, Khan E, Li W, Zeng G, Yang J, Zhou Y. Vinasse-based biochar magnetic composites: adsorptive removal of tetracycline in aqueous solutions. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:8916-8927. [PMID: 35146603 DOI: 10.1007/s11356-022-19012-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 01/28/2022] [Indexed: 06/14/2023]
Abstract
Highly efficient and cost-effective adsorbents for antibiotic removal are the key to mitigate pollution by industrial wastewaters. Pyrolyzing low-cost winemaking waste into biochar is a promising means for waste biomass utilization. This study assembled vinasse-derived biochar with manganese ferrite into vinasse-manganese ferrite biochar-magnetic composites (V-MFB-MCs) through simultaneous pyrolysis of waste biomass and metal (Mn and Fe) hydroxide precipitates. Batch experiments were conducted to evaluate the kinetics and isotherms of tetracycline (TC) adsorption as well as the influence of pH value, humic acid, and ionic strength. Morphological characterization showed that crystalline MnFe2O4 nanoparticles were impregnated within the framework of fabricated V-MFB-MCs. Superior TC adsorption capacity and fast pseudo-second-order kinetics could be achieved by the V-MFB-MCs-800 at pH 3.0. The TC adsorption onto V-MFB-MCs-800 was highly pH-dependent and controlled by the positive influence of ionic strength and humic acid. V-MFB-MCs-800 showed excellent adsorption performance in different natural water. Multiple interaction mechanisms including pore filling effect, π-π stacking interaction, and hydrogen bonding contribute to TC removal by V-MFB-MCs-800, which can be an innovative biowaste-derived material for industrial wastewater treatment.
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Affiliation(s)
- Yujia Xiang
- School of Environment and Energy, Guangdong Provincial Key Laboratory of Solid Wastes Pollution Control and Recycling, South China University of Technology, Guangzhou, Guangdong, 510006, China
- College of Resources and Environment, Hunan Agricultural University, Changsha, 410128, China
| | - Yuzhou Zhou
- College of Resources and Environment, Hunan Agricultural University, Changsha, 410128, China
| | - Bin Yao
- College of Resources and Environment, Hunan Agricultural University, Changsha, 410128, China
| | - Yuqing Sun
- Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China.
| | - Eakalak Khan
- Department of Civil and Environmental Engineering and Construction, University of Nevada, Las Vegas, NV, 89154, USA
| | - Wei Li
- School of Biology and Chemistry, Key Laboratory of Chemical Synthesis and Environmental Pollution Control-Remediation Technology of Guizhou Province, Xingyi Normal University for Nationalities, Xingyi, 562400, China
| | - Guihua Zeng
- Hunan Research Academy of Environmental Sciences, Changsha, 410002, China
| | - Jian Yang
- College of Resources and Environment, Hunan Agricultural University, Changsha, 410128, China
| | - Yaoyu Zhou
- College of Resources and Environment, Hunan Agricultural University, Changsha, 410128, China.
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31
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Zhu P, Wu Y, Ru Y, Hou Y, San KW, Yu X, Guo W. Industrial-scale aerobic composting of livestock manures with the addition of biochar: Variation of bacterial community and antibiotic resistance genes caused by various composting stages. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 314:120270. [PMID: 36162559 DOI: 10.1016/j.envpol.2022.120270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 09/04/2022] [Accepted: 09/21/2022] [Indexed: 06/16/2023]
Abstract
The presence of large amounts of antibiotic resistance genes (ARGs) in livestock manures poses an impending, tough safety risk to ecosystems. To investigate more comprehensively the mechanisms of ARGs removal from industrial-scale composting of livestock manure based on biochar addition, we tracked the dynamics of bacterial community and ARGs at various stages of aerobic composting of livestock manures with 10% biochar. There were no significant effects of biochar on the bacterial community and the profiles of ARGs. During aerobic composting, the relative abundance of ARGs and mobile genetic elements (MGEs) showed overall trends of decreasing and then increasing. The key factor driving the dynamics of ARGs was bacterial community composition, and the potential hosts of ARGs were Caldicoprobacter, Tepidimicrobium, Ignatzschineria, Pseudogracilibacillus, Actinomadura, Flavobacterium and Planifilum. The retention of the thermophilic bacteria and the repopulation of the initial bacteria were the dominant reasons for the increase in ARGs at maturation stage. Additionally, among the MGEs, the relative abundance of transposon gene was substantially removed, while the integron genes remained at high relative abundance. Our results highlighted that the suitability of biochar addition to industrial-scale aerobic composting needs to be further explored and that effective measures are needed to prevent the increase of ARGs content on maturation stage.
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Affiliation(s)
- Pengcheng Zhu
- Key Laboratory of Ecological Prewarning, Protection and Restoration of Bohai Sea, Ministry of Natural Resources, School of Life Sciences, Shandong University, Qingdao, 266237, PR China
| | - Yuxin Wu
- Key Laboratory of Ecological Prewarning, Protection and Restoration of Bohai Sea, Ministry of Natural Resources, School of Life Sciences, Shandong University, Qingdao, 266237, PR China
| | - Yuning Ru
- Key Laboratory of Ecological Prewarning, Protection and Restoration of Bohai Sea, Ministry of Natural Resources, School of Life Sciences, Shandong University, Qingdao, 266237, PR China
| | - Yihang Hou
- Key Laboratory of Ecological Prewarning, Protection and Restoration of Bohai Sea, Ministry of Natural Resources, School of Life Sciences, Shandong University, Qingdao, 266237, PR China
| | - Kim Woon San
- Tounong Organic Fertilizer Co. Ltd., Qingdao, 266733, PR China
| | - Xiaona Yu
- Key Laboratory of Ecological Prewarning, Protection and Restoration of Bohai Sea, Ministry of Natural Resources, School of Life Sciences, Shandong University, Qingdao, 266237, PR China
| | - Weihua Guo
- Key Laboratory of Ecological Prewarning, Protection and Restoration of Bohai Sea, Ministry of Natural Resources, School of Life Sciences, Shandong University, Qingdao, 266237, PR China.
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32
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Zhou Z, Shuai X, Lin Z, Meng L, Ba X, Holmes MA, Chen H. Short-term inhalation exposure evaluations of airborne antibiotic resistance genes in environments. J Environ Sci (China) 2022; 122:62-71. [PMID: 35717091 DOI: 10.1016/j.jes.2021.10.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 10/06/2021] [Accepted: 10/06/2021] [Indexed: 06/15/2023]
Abstract
Antibiotic resistance is a sword of Damocles that hangs over humans. In regards to airborne antibiotic resistance genes (AARGs), critical knowledge gaps still exist in the identification of hotspots and quantification of exposure levels in different environments. Here, we have studied the profiles of AARGs, mobile genetic elements (MGEs) and bacterial communities in various atmospheric environments by high throughput qPCR and 16S rRNA gene sequencing. We propose a new AARGs exposure dose calculation that uses short-term inhalation (STI). Swine farms and hospitals were high-risk areas where AARGs standardised abundance was more abundant than suburbs and urban areas. Additionally, resistance gene abundance in swine farm worker sputum was higher than that in healthy individuals in other environments. The correlation between AARGs with MGEs and bacteria was strong in suburbs but weak in livestock farms and hospitals. STI exposure analysis revealed that occupational intake of AARGs (via PM10) in swine farms and hospitals were 110 and 29 times higher than in suburbs, were 1.5 × 104, 5.6 × 104 and 5.1 × 102 copies, i.e., 61.9%, 75.1% and 10.7% of the overall daily inhalation intake, respectively. Our study comprehensively compares environmental differences in AARGs to identify high-risk areas, and forwardly proposes the STI exposure dose of AARGs to guide risk assessment.
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Affiliation(s)
- Zhenchao Zhou
- Institute of Environmental Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 9DA , UK
| | - Xinyi Shuai
- Institute of Environmental Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Zejun Lin
- Institute of Environmental Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Lingxuan Meng
- Institute of Environmental Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Xiaoliang Ba
- Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 9DA , UK
| | - Mark A Holmes
- Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 9DA , UK
| | - Hong Chen
- Institute of Environmental Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China.
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Xu X, Zhou W, Xie C, Zhu Y, Tang W, Zhou X, Xiao H. Airborne bacterial communities in the poultry farm and their relevance with environmental factors and antibiotic resistance genes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 846:157420. [PMID: 35850323 DOI: 10.1016/j.scitotenv.2022.157420] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Revised: 07/11/2022] [Accepted: 07/12/2022] [Indexed: 06/15/2023]
Abstract
The accelerating occurrence and environmental dissemination of bacteria, gas pollutants and antibiotic resistance genes (ARGs) in aerosols of poultry farms have become emerging environmental issues due to their potential threat to animals, workers, and the communities located near such farms. Here, aerosol samples were gathered from inside and outside of the chicken house in winter with a transportable high-flow bioaerosol sampler. Then, 16S rRNA gene amplicon sequencing was used to categorize the bacteria in air samples, and the abundance of 12 ARG subtypes was researched via the real-time quantitative polymerase chain reaction (qPCR). Results indicated that the bacterial richness and diversity and total absolute abundance of ARGs were similar in the bioaerosols from indoor and downwind site of the poultry farm. The zoonotic pathogens, Staphylococcus and Corynebacterium, were detected both inside and outside of the chicken house, and the four most abundant target genes were blaTEM, tetQ, ermB and sul1 in aerosols. Moreover, the correlation between the bacterial communities and environmental factors, such as NH3 and H2S concentrations, wind speed, temperature and relative humidity, was analyzed. The result revealed that the indoor bacteria community was positively associated with temperature and concentrations of air pollutants (NH3 and H2S), and could spread from confinement buildings to the ambient atmosphere through wind. In addition, the network analysis result showed that the airborne bacteria might significantly contribute in shaping the ARGs' profiles in bioaerosol from inside and outside of the poultry house. Overall, our results revealed the airborne bacterial communities and their associated influencing factors in the micro-environment (inside of the chicken house and nearby the boundary of the farm), and brought a new perspective for studying the gas pollutants and bioaerosol from poultry farms in winter.
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Affiliation(s)
- Xing Xu
- Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | - Weidong Zhou
- Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | - Chuanqi Xie
- Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | - Yinchu Zhu
- Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | - Wensheng Tang
- Institute of Animal Husbandry and Veterinary Science, Huangyan Bureau of Agriculture and Rural Affairs, Taizhou 318020, China
| | - Xin Zhou
- Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
| | - Hua Xiao
- Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
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34
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Cui H, Wang L, Zhang J. Synergistic influence on microbial communities ascribed to copper and tetracycline during aerobic composting: Insights into bacterial and fungal structures. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.1019494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
There are a considerable number of discussions aimed at analyzing microbial communities and their functions during the composting process. However, microbial succession under copper (Cu) and tetracycline (TCH)-stressed conditions has received less attention. Thus, this work analyzed the bacterial and fungal structures with high-throughput sequencing in Cu/TCH-amended composting (Cu: 0, 100, and 500 mg/kg; TCH: 0, 50, and 300 mg/kg), and the dominating controls on microbial diversity were identified using redundancy analysis (RDA) and structural equation models (SEMs). Low-concentration Cu increased the peak temperature (57°C) at the thermophilic phase. Composting phase-derived changes in bacterial and fungal communities were significant, while Cu and TCH showed a remarkable influence on fungi but not on bacteria. Cu and TCH inhibited Firmicutes' activity while promoting Actinobacteriota growth. Low-concentration Cu and TCH had a negative effect on Basidiomycota in the thermophilic phase and a positive influence on Chytridiomycota in the mature phase. TOC and TN were primary controls on the changes in microbial communities. NH4+-N and NO3--N were more beneficial to fungi with a contribution proportion of 42.13 and 16.85%, respectively. These findings could provide theoretical guidance for the directional research on microbial inoculants.
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35
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Zou Y, Zhang Y, Zhou J, Bao C, Chen M, He W, Shi X. Effects of composting pig manure at different mature stages on ARGs in different types of soil-vegetable systems. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 321:116042. [PMID: 36029631 DOI: 10.1016/j.jenvman.2022.116042] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 08/06/2022] [Accepted: 08/17/2022] [Indexed: 06/15/2023]
Abstract
Aerobic composting is considered as an economically as well as environmentally friendly technology that prevents the diffusion of ARGs and ARBs from manure to farmland soil, on which many studies have been conducted. However, the transmission route and potential ecological risks of ARGs in soil-vegetable systems after application of manure at different maturity stages remain unclear. Therefore, through a pot experiment, this study analyzed the effects of manure composted from livestock excrement on ARGs and microbial community in different soil-vegetable systems, taking leafy plants (Shanghai green) and tuber plants (carrot) as examples. It was noted that the highly matured manure could reduce the ARGs contamination in soil and crops, and the ARGs in soil tended to accumulate in the direction of plant roots. The edible part of crops often had a more serious ecological risk of ARGs, and the potential pathogenic bacteria and ARGs could harm human health through exposure and dietary routes. In summary, this study provides new evidence for the transmission of ARGs in soil-vegetable systems with different mature stages of manure and highlights the potential safety risks of the transfer of antibiotic resistance from manure to soil and ultimately to the human food chain.
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Affiliation(s)
- Yun Zou
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, China
| | - Yuan Zhang
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, China.
| | - Jie Zhou
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, China
| | - Canxin Bao
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, China
| | - Minglong Chen
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, China
| | - Wencheng He
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, China
| | - Xincheng Shi
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, China
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36
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Sun P, Liu B, Ahmed I, Yang J, Zhang B. Composting effect and antibiotic removal under a new temperature control strategy. WASTE MANAGEMENT (NEW YORK, N.Y.) 2022; 153:89-98. [PMID: 36063581 DOI: 10.1016/j.wasman.2022.08.025] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Revised: 07/29/2022] [Accepted: 08/26/2022] [Indexed: 06/15/2023]
Abstract
The main objective of this study was to investigate the feasibility of a new temperature control strategy in the co-composting process to accelerate operation cycle and remove antibiotics from mixed organic wastes. The evaluation of the composting process showed that composting with temperature control (TC) was completed within 14 days. The final compost of TC exhibited a 10% higher degradation of organic matters, more humus formation and 11.25% lower heavy metals concentration than conventional composting (CC), which fully met the Chinese National Agricultural Organic Fertilizer Standard requirements. The degradation extent and kinetic of macrolides, tetracyclines, sulfonamides and fluoroquinolones showed that the removal efficiency of total antibiotics in TC was 23.58% higher than CC, with less half-life, which was significantly correlated with higher temperature. Particularly, the highest removal was observed for sulfonamides (87.45%) in TC, the half-life of which was reduced by 75.95% compared with CC. The higher degradation rate was attributed to enhanced decomposition of unstable antibiotics and degrading activity of microbes at high temperature. The microbiological analysis showed that the external heating led to a distinct composition and succession of bacterial community in TC. Firmicutes, Proteobacteria, Actinobacteriota and Bacteroidota were dominant and the emergence of Patescibacteria and Chloroflexi at cooling period in TC proved that the later composting environment was in an oligotrophic state. Current research provided a promising rapid composting approach for high-quality fertilizer production and antibiotic management in organic waste disposal.
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Affiliation(s)
- Pengyu Sun
- School of Environmental Science and Engineering, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai 200240, China
| | - Botao Liu
- School of Environmental Science and Engineering, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai 200240, China
| | - Imtiaz Ahmed
- School of Environmental Science and Engineering, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai 200240, China
| | - Jun Yang
- School of Environmental Science and Engineering, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai 200240, China
| | - Bo Zhang
- School of Environmental Science and Engineering, Shanghai Jiaotong University, 800 Dongchuan Road, Shanghai 200240, China; State Environmental Protection Key Laboratory of Environmental Health Impact Assessment of Emerging Contaminants, Shanghai 200240, China.
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37
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Xia X, Zhai Y, Teng Y. Microbial response to biogeochemical profile in a perpendicular riverbank filtration site. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2022; 244:114070. [PMID: 36099687 DOI: 10.1016/j.ecoenv.2022.114070] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 09/07/2022] [Accepted: 09/08/2022] [Indexed: 06/15/2023]
Abstract
Due to extensive water exchanges and abundant active biochemical compositions, active and complex hydrogeochemical processes often exist in riverbank filtration (RBF). The distribution of microbes is considered to be profoundly affected by these processes and is considered to impact the hydrogeochemical processes and the migration and transformation of water pollutants in turn and then impact the water quality. The distribution of microbes and their response to the physiochemical properties along a vertical RBF profile perpendicular to the Songhua River in Northeast China was explored by using 16 S rRNA and redundancy analysis (RDA). The results showed that various microbes were found in the vertical riparian filter (RBF) curve, including Actinobacteria, Proteobacteria, Acidobacteria, Chloroflexi, and Firmicutes. With increasing depth (vertical) and distance from the river (lateral), the microbial community and diversity in the RBF sediment profile decreased. Nitrospirota, Pseudomonas, Gammaproteobacteria, Ochrobactrum, Acinetobacter and Desulfobacterota of the RBF core taxa were also significantly correlated with the biotransformation behavior of typical groundwater pollutants (ammonia, Fe, Mn and S). The amount of As in the RBF is too low to sustain microbial survival. Some microbes in RBF can also degrade natural organic pollutants. This study not only revealed the spatial distribution of geological microbes under the impact of hydrological processes but also lays a foundation for the further study of the hydrobiogeochemical processes of active biochemical compositions in groundwater and water quality evolution, which is of positive significance to ensure the quality safety of the drinking water supplied by RBFs.
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Affiliation(s)
- Xuelian Xia
- Engineering Research Center of Groundwater Pollution Control and Remediation of Ministry of Education of China, College of Water Sciences, Beijing Normal University, Beijing 100875, China
| | - Yuanzheng Zhai
- Engineering Research Center of Groundwater Pollution Control and Remediation of Ministry of Education of China, College of Water Sciences, Beijing Normal University, Beijing 100875, China.
| | - Yanguo Teng
- Engineering Research Center of Groundwater Pollution Control and Remediation of Ministry of Education of China, College of Water Sciences, Beijing Normal University, Beijing 100875, China.
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38
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Li H, Wang X, Tan L, Li Q, Zhang C, Wei X, Wang Q, Zheng X, Xu Y. Coconut shell and its biochar as fertilizer amendment applied with organic fertilizer: Efficacy and course of actions on eliminating antibiotic resistance genes in agricultural soil. JOURNAL OF HAZARDOUS MATERIALS 2022; 437:129322. [PMID: 35728320 DOI: 10.1016/j.jhazmat.2022.129322] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Revised: 05/30/2022] [Accepted: 06/06/2022] [Indexed: 06/15/2023]
Abstract
Biomass amendments have numerous benefits in reducing antibiotic resistance genes (ARGs) in the soil environment. However, there are debatable outcomes regarding the effect of raw biomass and its pyrolytic biochar on ARGs, and the exploration of the influence mechanism is still in infancy. Herein, we investigated the changes in soil ARGs under the organic fertilizer application with coconut shell and its biochar. The results showed that the coconut shell biochar could effectively diminish ARGs, with 61.54% reduction in target ARGs, which was higher than that adding raw coconut shells (p < 0.05). Structural equation modeling indicated that ARGs were significantly affected by changes in environmental factors, mainly by modulating bacterial communities. Neutral community model and network analysis demonstrated that the coconut shell biochar can restrict the species dispersal, thereby mitigating the spread of ARGs. Also, coconut shell biochar exhibited strong adsorption, with a large specific surface area (476.66 m2/g) and pores (pore diameter approximately 1.207 nm, total pore volume: 0.2451 m3/g), which markedly enhanced soil heterogeneity that created a barrier to limit the resistant bacteria proliferation and ARGs propagation. The outcome gives an approach to control the development of ARGs after organic fertilizer application into soil.
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Affiliation(s)
- Houyu Li
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China
| | - Xiaolong Wang
- College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Pollution Processes and Environmental Criteria, Nankai University, Tianjin 300071, China
| | - Lu Tan
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China
| | - Qian Li
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China
| | - Chunxue Zhang
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China
| | - Xiaocheng Wei
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China
| | - Qiang Wang
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China
| | - Xiangqun Zheng
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China.
| | - Yan Xu
- Agro-Environmental Protection Institute, Ministry of Agriculture and Rural Affairs, Tianjin 300191, China.
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39
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Uday V, Harikrishnan PS, Deoli K, Zitouni F, Mahlknecht J, Kumar M. Current trends in production, morphology, and real-world environmental applications of biochar for the promotion of sustainability. BIORESOURCE TECHNOLOGY 2022; 359:127467. [PMID: 35710048 DOI: 10.1016/j.biortech.2022.127467] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 06/08/2022] [Accepted: 06/10/2022] [Indexed: 06/15/2023]
Abstract
Biochar has sparked a lot of interest in recent years for various applications such as contaminant removal, carbon sequestration and soil amendment. However, laboratory scale studies dominates over the real-world applications. In this study, we first enumerated on the various ongoing uses of biochar along with adsorption mechanism; and then identified the most suitable source, and efficient method for biochar production; and finally proposed real-world practical applications of biochar as an additive to control diffuse micropollutant pollution along the highways and railway tracks; as well as the pollution through agricultural runoff. We demonstrated that directly or indirectly, biochar can definitely help to achieve all the 17 Sustainable Development Goals. The study on the practical use of biochar is an emerging area, because a lot of research needs are there to realise the full-potential of biochar with ways of attaining sustainable development goals towards waste, energy and pollution management.
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Affiliation(s)
- Vismaya Uday
- Sustainability Cluster, School of Engineering, University of Petroleum and Energy Studies, Dehradun 248007, India
| | - P S Harikrishnan
- Sustainability Cluster, School of Engineering, University of Petroleum and Energy Studies, Dehradun 248007, India
| | - Kanchan Deoli
- Sustainability Cluster, School of Engineering, University of Petroleum and Energy Studies, Dehradun 248007, India
| | - Faiza Zitouni
- College of Engineering, Applied Science University (ASU), Kingdom of Bahrain, UAE
| | - Jürgen Mahlknecht
- Escuela de Ingeniería y Ciencias, Tecnologico de Monterrey, Campus Monterey, Monterrey 64849, Nuevo Leon, Mexico
| | - Manish Kumar
- Sustainability Cluster, School of Engineering, University of Petroleum and Energy Studies, Dehradun 248007, India.
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40
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Shao B, Liu Z, Tang L, Liu Y, Liang Q, Wu T, Pan Y, Zhang X, Tan X, Yu J. The effects of biochar on antibiotic resistance genes (ARGs) removal during different environmental governance processes: A review. JOURNAL OF HAZARDOUS MATERIALS 2022; 435:129067. [PMID: 35650729 DOI: 10.1016/j.jhazmat.2022.129067] [Citation(s) in RCA: 35] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Revised: 04/18/2022] [Accepted: 05/01/2022] [Indexed: 05/24/2023]
Abstract
Antibiotic resistance genes (ARGs) pollution has been considered as one of the most significant emerging environmental and health challenges in the 21st century, many efforts have been paid to control the proliferation and dissemination of ARGs in the environment. Among them, the biochar performs a positive effect in reducing the abundance of ARGs during different environmental governance processes and has shown great application prospects in controlling the ARGs. Although there are increasing studies on employing biochar to control ARGs, there is still a lack of review paper on this hotspot. In this review, firstly, the applications of biochar to control ARGs in different environmental governance processes were summarized. Secondly, the processes and mechanisms of ARGs removal promoted by biochar were proposed and discussed. Then, the effects of biochar properties on ARGs removal were highlighted. Finally, the future prospects and challenges of using biochar to control ARGs were proposed. It is hoped that this review could provide some new guidance for the further research of this field.
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Affiliation(s)
- Binbin Shao
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha 410082, PR China
| | - Zhifeng Liu
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha 410082, PR China.
| | - Lin Tang
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha 410082, PR China.
| | - Yang Liu
- School of Minerals Processing and Bioengineering, Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, PR China
| | - Qinghua Liang
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha 410082, PR China
| | - Ting Wu
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha 410082, PR China
| | - Yuan Pan
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha 410082, PR China
| | - Xiansheng Zhang
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha 410082, PR China
| | - Xiaofei Tan
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha 410082, PR China
| | - Jiangfang Yu
- College of Environmental Science and Engineering, Hunan University and Key Laboratory of Environmental Biology and Pollution Control (Hunan University), Ministry of Education, Changsha 410082, PR China
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Oh S, Kim Y, Choi D, Park JW, Noh JH, Chung SY, Maeng SK, Cha CJ. Effects of biochar addition on the fate of ciprofloxacin and its associated antibiotic tolerance in an activated sludge microbiome. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 306:119407. [PMID: 35526648 DOI: 10.1016/j.envpol.2022.119407] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Revised: 03/31/2022] [Accepted: 04/30/2022] [Indexed: 06/14/2023]
Abstract
This study investigated the effects of adding biochar (BC) on the fate of ciprofloxacin (CIP) and its related antibiotic tolerance (AT) in activated sludge. Three activated sludge reactors were established with different types of BC, derived from apple, pear, and mulberry tree, respectively, and one reactor with no BC. All reactors were exposed to an environmentally relevant level of CIP that acted as a definitive selective pressure significantly promoting AT to four representative antibiotics (CIP, ampicillin, tetracycline, and polymyxin B) by up to two orders of magnitude. While CIP removal was negligible in the reactor without BC, the BC-dosed reactors effectively removed CIP (70-95% removals) through primarily adsorption by BC and biodegradation/biosorption by biomass. The AT in the BC-added reactors was suppressed by 10-99%, compared to that without BC. The BC addition played a key role in sequestering CIP, thereby decreasing the selective pressure that enabled the proactive prevention of AT increase. 16S rRNA gene sequencing analysis showed that the BC addition alleviated the CIP-mediated toxicity to community diversity and organisms related to phosphorous removal. Machine learning modeling with random forest and support vector models using AS microbiome data collectively pinpointed Achromobacter selected by CIP and strongly associated with the AT increase in activated sludge. The identification of Achromobacter as an important AT bacteria revealed by the machine learning modeling with multiple models was also validated with a linear Pearson's correlation analysis. Overall, our study highlighted Achromobacter as a potential useful sentinel for monitoring AT occurring in the environment and suggested BC as a promising additive in wastewater treatment to improve micropollutant removal, mitigate potential AT propagation, and maintain community diversity against toxic antibiotic loadings.
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Affiliation(s)
- Seungdae Oh
- Department of Civil Engineering, Kyung Hee University, 1732 Deogyeong-daero, Yongin-si, Gyeonggi-do, 17104, Republic of Korea.
| | - Youngjun Kim
- Department of Civil Engineering, Kyung Hee University, 1732 Deogyeong-daero, Yongin-si, Gyeonggi-do, 17104, Republic of Korea
| | - Donggeon Choi
- Department of Civil Engineering, Kyung Hee University, 1732 Deogyeong-daero, Yongin-si, Gyeonggi-do, 17104, Republic of Korea
| | - Ji Won Park
- Department of Civil and Environmental Engineering, Sejong University, 209 Neungdong-ro, Gwangjin-gu, Seoul, 05006, Republic of Korea
| | - Jin Hyung Noh
- Department of Civil and Environmental Engineering, Sejong University, 209 Neungdong-ro, Gwangjin-gu, Seoul, 05006, Republic of Korea
| | - Sang-Yeop Chung
- Department of Civil and Environmental Engineering, Sejong University, 209 Neungdong-ro, Gwangjin-gu, Seoul, 05006, Republic of Korea
| | - Sung Kyu Maeng
- Department of Civil and Environmental Engineering, Sejong University, 209 Neungdong-ro, Gwangjin-gu, Seoul, 05006, Republic of Korea
| | - Chang-Jun Cha
- Department of Systems Biotechnology and Center for Antibiotic Resistome, Chung-Ang University, 4726 Seodong-daero, Anseong-si, Gyeonggi-do, 17546, Republic of Korea
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Tong Z, Liu F, Tian Y, Zhang J, Liu H, Duan J, Bi W, Qin J, Xu S. Effect of biochar on antibiotics and antibiotic resistance genes variations during co-composting of pig manure and corn straw. Front Bioeng Biotechnol 2022; 10:960476. [PMID: 35979171 PMCID: PMC9377313 DOI: 10.3389/fbioe.2022.960476] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 06/30/2022] [Indexed: 12/03/2022] Open
Abstract
Pig manure is a reservoir of antibiotics and antibiotic resistance genes (ARGs). The effect of biochar on the variations in physicochemical properties, bacterial communities, antibiotics, ARGs, and mobile genetic elements (MGEs) of compost product during co-composting of pig manure and corn straw have been investigated in this study. Compared with the control treatment (CK), biochar addition accelerated the increase in pile temperature and prolonged the high temperature period (>55°C) for 2 days. Under biochar influence, organic matter degradation, NH4+-N conversion and NO3−-N production was accelerated, and dissolved total organic carbon (DOC) and dissolved total nitrogen (DTN) utilization by microorganisms were enhanced. Biochar addition altered the microbial community and promoted the vital activity of Actinobacteria in the later composting stage. The antibiotics removal efficiency (except danofloxacin and enrofloxacin) was accelerated in the early composting stage (1–14 days) by biochar addition, the pile temperature had a positive effect on antibiotics removal, and the total antibiotics removal efficiency in CK and CK+Biochar treatments was 69.58% and 78.67% at the end of the composting process, respectively. The absolute abundance of most of the ARGs in the CK+Biochar treatment was lower than that in the CK treatment during composting, and the ARGs removal mainly occurred in the early (1–14 days) and later (28–50 days) stages. Biochar addition reduced the absolute abundance of MGEs (intI1, intI2) in the compost product, and most of the ARGs had a significant positive correlation with MGEs. Network analysis and redundancy analysis showed that ARGs and MGEs occurred in various host bacteria (Firmicutes, Actinobacteria, Bacteroidetes, Proteobacteria, and Halanaerobiaeota), and that DTN and NH4+-N are the main factors regulating the changes in bacterial communities, antibiotics, ARGs, and MGEs during composting. Moreover, MGEs contributed the most to the variation in ARGs. In summary, biochar addition during composting accelerated antibiotics removal and inhibited accumulation and transmission of ARGs. The results of this study could provide theoretical and technical support for biochar application for antibiotics and ARGs removal during livestock and poultry manure composting.
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Affiliation(s)
- Zhenye Tong
- College of Resources and Environment, Shanxi Agricultural University, Jinzhong, China
| | - Fenwu Liu
- College of Resources and Environment, Shanxi Agricultural University, Jinzhong, China
- *Correspondence: Fenwu Liu,
| | - Yu Tian
- College of Resources and Environment, Shanxi Agricultural University, Jinzhong, China
| | - Jingzhi Zhang
- College of Resources and Environment, Shanxi Agricultural University, Jinzhong, China
| | - Hui Liu
- College of Resources and Environment, Shanxi Agricultural University, Jinzhong, China
| | - Jiaze Duan
- Nongshengyuan Family Farm, Jinzhong, China
| | - Wenlong Bi
- College of Resources and Environment, Shanxi Agricultural University, Jinzhong, China
| | - Junmei Qin
- College of Resources and Environment, Shanxi Agricultural University, Jinzhong, China
| | - Shaozu Xu
- College of Resources and Environment, Shanxi Agricultural University, Jinzhong, China
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43
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Wang G, Kong Y, Yang Y, Ma R, Li L, Li G, Yuan J. Composting temperature directly affects the removal of antibiotic resistance genes and mobile genetic elements in livestock manure. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 303:119174. [PMID: 35306090 DOI: 10.1016/j.envpol.2022.119174] [Citation(s) in RCA: 30] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 03/12/2022] [Accepted: 03/15/2022] [Indexed: 06/14/2023]
Abstract
The high antibiotic resistance gene (ARGs) contents in livestock manure pose a potential risk to environment and human health. The heap composting with an ambient temperature and thermophilic composting are two methods for converting livestock manure into fertilizer. This study investigated the variations in ARGs and mobile genetic elements (MGEs) and revealed potential mechanisms for ARGs removal using the two composting methods. The ARGs abundance were enriched by 44-fold in heap composting, among them, the macrolide-resistance genes increased significantly. On the contrary, the ARGs were removed by 92% in thermophilic composting, among them, tetracycline-resistance genes decreased by 97%. The bacterial hosts of ARGs were associated with the variations of ARGs and MGEs. The tetO was correlated with the most diverse bacteria in heap composting, and Bacteroidetes was the major host bacteria. While tetT was correlated with the most diverse bacteria in thermophilic composting, and Proteobacteria was the major host bacteria. Structural equation models showed that the enrichment of ARGs in heap composting was mainly correlated with bacterial communities, whereas, the removal of ARGs in thermophilic composting was directly affect by MGEs. Composting temperature directly affected the variations in ARGs. Higher and lower temperatures significantly decreased and increased, respectively, ARGs and MGEs abundance levels.
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Affiliation(s)
- Guoying Wang
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental Science, China Agricultural University, Beijing, 100193, China
| | - Yilin Kong
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental Science, China Agricultural University, Beijing, 100193, China
| | - Yan Yang
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental Science, China Agricultural University, Beijing, 100193, China
| | - Ruonan Ma
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental Science, China Agricultural University, Beijing, 100193, China
| | - Liqiong Li
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental Science, China Agricultural University, Beijing, 100193, China
| | - Guoxue Li
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental Science, China Agricultural University, Beijing, 100193, China
| | - Jing Yuan
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental Science, China Agricultural University, Beijing, 100193, China.
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Shi Z, Zhang P, Liu Y, Zhao Y, Wang C. Accumulation of antibiotic resistance genes in pakchoi (Brassica chinensis L.) grown in chicken manure-fertilized soil amended with fresh and aged biochars. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:39410-39420. [PMID: 35103947 DOI: 10.1007/s11356-022-18941-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Accepted: 01/25/2022] [Indexed: 06/14/2023]
Abstract
Biochar has been used to alleviate the contamination of antibiotic resistance genes (ARGs) in soil and to inhibit ARGs transfer from soil to plants. However, the effect of aged biochar on ARGs abundance in soil and ARGs enrichment in plants are scarcely investigated. In this study, a pot experiment was conducted to compare the effects of fresh and aged biochars on the accumulation of five typical ARGs including tetX, tetW, sul2, ermB, and intI1 in a chicken manure-fertilized soil and in pakchoi (Brassica chinensis L.). Results showed that both biochars significantly decreased the abundance of tetW, sul2, and ermB and increased the abundance of tetX and intI1 in soil. However, the accumulation of all tested ARGs in pakchoi were significantly decreased by both biochars. At the lower addition rate (1%), the fresh biochar was superior to the aged biochar in decreasing the accumulation of some genes (tetW, tetX, and sul2) in pakchoi, whereas an opposite tendency was observed for other genes (ermB and intI1). As the addition rate increased to 2%, the difference between the two biochars diminished, and a similar capacity of decreasing ARGs transfer was observed. The reduction in ARGs accumulation in pakchoi was highly related to the type of ARGs, the biochar addition level, and the aging of biochar. Our results provide insights into the naturally aged biochar on the fate of ARGs in a soil-plant system.
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Affiliation(s)
- Zhiming Shi
- College of Environmental and Resource Sciences, Shanxi University, Taiyuan, 030006, PR China
- Shaanxi Key Laboratory of Land Consolidation, School of Earth Science and Resources, Chang'an University, Xi'an, 710064, PR China
- Shanxi Laboratory for Yellow River, Shanxi University, Taiyuan, 030006, PR China
| | - Peng Zhang
- College of Environmental and Resource Sciences, Shanxi University, Taiyuan, 030006, PR China
- Shanxi Laboratory for Yellow River, Shanxi University, Taiyuan, 030006, PR China
| | - Yan Liu
- College of Environmental and Resource Sciences, Shanxi University, Taiyuan, 030006, PR China
- Shanxi Laboratory for Yellow River, Shanxi University, Taiyuan, 030006, PR China
| | - Yonghua Zhao
- Shaanxi Key Laboratory of Land Consolidation, School of Earth Science and Resources, Chang'an University, Xi'an, 710064, PR China.
| | - Congying Wang
- College of Environmental and Resource Sciences, Shanxi University, Taiyuan, 030006, PR China.
- Shaanxi Key Laboratory of Land Consolidation, School of Earth Science and Resources, Chang'an University, Xi'an, 710064, PR China.
- Shanxi Laboratory for Yellow River, Shanxi University, Taiyuan, 030006, PR China.
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45
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He X, Xiong J, Yang Z, Han L, Huang G. Exploring the impact of biochar on antibiotics and antibiotics resistance genes in pig manure aerobic composting through untargeted metabolomics and metagenomics. BIORESOURCE TECHNOLOGY 2022; 352:127118. [PMID: 35398213 DOI: 10.1016/j.biortech.2022.127118] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2022] [Revised: 04/01/2022] [Accepted: 04/02/2022] [Indexed: 06/14/2023]
Abstract
This study investigated the effect of biochar on antibiotics and antibiotic resistance genes (ARGs) during aerobic composting of pig manure. First, the composition and content of antibiotics in the manure were determined qualitatively and quantitatively. Biochar promoted the degradation of these antibiotics (oxytetracycline, chlortetracycline, and tetracycline). The relative abundance (RA) of antibiotic-resistant bacteria carrying ARGs accounted for about 29.32% of the total bacteria. Firmicutes and Actinomycetes were dominant phylum-level bacteria at the early and late stages of composting, respectively. Biochar decreased the total RA of ARGs by 16.83%±4.10%. tetW and tetL, closely related to tetracycline resistance, were significantly diminished during aerobic composting, and biochar was able to promote this removal. Biochar enhanced RAs of Mycobacterium tuberculosis kasA mutant. RAs of ARGs related to antibiotic efflux pumps, such as baeS and arlS, remained at a high level. Conclusively, biochar promotes degradation of antibiotics and removal of ARGs.
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Affiliation(s)
- Xueqin He
- Engineering Laboratory for Agrobiomass Recycling & Valorizing, China Agricultural University, Beijing 100083, China
| | - Jinpeng Xiong
- Engineering Laboratory for Agrobiomass Recycling & Valorizing, China Agricultural University, Beijing 100083, China
| | - Zengling Yang
- Engineering Laboratory for Agrobiomass Recycling & Valorizing, China Agricultural University, Beijing 100083, China
| | - Lujia Han
- Engineering Laboratory for Agrobiomass Recycling & Valorizing, China Agricultural University, Beijing 100083, China
| | - Guangqun Huang
- Engineering Laboratory for Agrobiomass Recycling & Valorizing, China Agricultural University, Beijing 100083, China.
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46
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Ejileugha C. Biochar can mitigate co-selection and control antibiotic resistant genes (ARGs) in compost and soil. Heliyon 2022; 8:e09543. [PMID: 35663734 PMCID: PMC9160353 DOI: 10.1016/j.heliyon.2022.e09543] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Revised: 03/31/2022] [Accepted: 05/20/2022] [Indexed: 11/17/2022] Open
Abstract
Heavy metals (HMs) contamination raises the expression of antibiotic resistance (AR) in bacteria through co-selection. Biochar application in composting improves the effectiveness of composting and the quality of compost. This improvement includes the elimination and reduction of antibiotic resistant genes (ARGs). The use of biochar in contaminated soils reduces the bioaccessibility and bioavailability of the contaminants hence reducing the biological and environmental toxicity. This decrease in contaminant bioavailability reduces contaminants induced co-selection pressure. Conditions which favour reduction in HMs bioavailable fraction (BF) appear to favour reduction in ARGs in compost and soil. Biochar can prevent horizontal gene transfer (HGT) and can eliminate ARGs carried by mobile genetic elements (MGEs). This effect reduces maintenance and propagation of ARGs. Firmicutes, Proteobacteria, and Actinobacteria are the major bacteria phyla identified to be responsible for dissipation, maintenance, and propagation of ARGs. Biochar application rate at 2-10% is the best for the elimination of ARGs. This review provides insight into the usefulness of biochar in the prevention of co-selection and reduction of AR, including challenges of biochar application and future research prospects.
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Affiliation(s)
- Chisom Ejileugha
- Lancaster Environment Centre (LEC), Lancaster University, LA1 4YQ, United Kingdom
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47
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On-Farm Composting of Hop Plant Green Waste—Chemical and Biological Value of Compost. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12094190] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Green agro waste can be turned into compost, which can then be used as an organic fertilizer, thus reducing the environmental impact of food and feed production. This research is focused on finding a feasible on-farm composting treatment of plant biomass to produce high-quality compost. Three different composting treatments were prepared and followed (with different additives at the start—biochar (BC) and effective microorganisms (EM), no additive (CON); covering and not covering the pile; different start particles size). Samples were analysed for nutrient concentrations, phytotoxicity and bacterial and fungal presence after seven months of composting. In 100 g of dry matter, the average compost contained 2.7 g, 0.38 g and 1.08 g of N, P and K, respectively. All investigated treatments contained more than 2% of total nitrogen in dry mass, so they could be used as a fertilizer. The highest nutrient content was observed in compost of small particle size (˂5 cm) and added biochar (11 kg/t fresh biomass). However, this compost had the least bacteria and fungi due to very high temperatures in the thermophilic phase of this pile. According to the radish germination index, the prepared composts have no phytotoxic properties and are stable and ready to use in plant production. Taking the cress germination test into consideration, they provided a nutrient-rich and biostimulative soil amendment. All three final composts were stable in terms of respiration rate, growth and germination tests. Results have shown that hop biomass after harvest has great potential for composting.
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Li X, Wang P, Chu S, Xu Y, Su Y, Wu D, Xie B. Short-term biodrying achieves compost maturity and significantly reduces antibiotic resistance genes during semi-continuous food waste composting inoculated with mature compost. JOURNAL OF HAZARDOUS MATERIALS 2022; 427:127915. [PMID: 34863571 DOI: 10.1016/j.jhazmat.2021.127915] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Revised: 11/22/2021] [Accepted: 11/24/2021] [Indexed: 06/13/2023]
Abstract
Food waste (FW) is important object of resource utilization and source of antibiotic resistance genes (ARGs). This study investigated the effects of biodrying combined with inoculating mature compost (B&M) on the composting efficiency, succession of bacterial communities and their links with metabolism functions as well as the fate of ARGs during FW composting. The results showed that B&M could rapidly raise and maintain high relative abundance of Bacillaceae (66.59-94.44%) as well as composting temperature (45.86-65.86 ℃), so as to achieve the final maturity of FW composting in a short time by regulating microbial carbohydrate (14.02-15.31%) and amino acid metabolism (10.33-12.47%). Network analysis demonstrated that high temperature could effectively inhibit the proliferation and spread of potential bacterial hosts of ARGs and integrons including Lactobacillaceae, Enterobacteriaceae, Leuconostocaceae and Corynebacteriaceae during the first two days of composting. As a result, B&M significantly reduced the absolute (72.09-99.47%) and relative abundances (0.31-2.44 logs) of nearly all ARGs especially ermB, tetM, blaCTX-M and blaOXA. Present study deepened the knowledge of ARGs variation, succession and metabolism functions of bacterial communities when B&M processes were used for FW composting, suggesting a promising technology for reducing the transmission risk of ARGs and reaching maturity of FW composting.
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Affiliation(s)
- Xunan Li
- Shanghai Engineering Research Center of Biotransformation of Organic Solid Waste, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China; Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China
| | - Panliang Wang
- Shanghai Engineering Research Center of Biotransformation of Organic Solid Waste, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China; Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China
| | - Siqin Chu
- Shanghai Engineering Research Center of Biotransformation of Organic Solid Waste, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China; Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China
| | - Yulu Xu
- Shanghai Engineering Research Center of Biotransformation of Organic Solid Waste, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China; Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China
| | - Yinglong Su
- Shanghai Engineering Research Center of Biotransformation of Organic Solid Waste, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China; Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China; Engineering Research Center for Nanophotonics and Advanced Instrument, Ministry of Education, East China Normal University, Shanghai 200062, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, PR China
| | - Dong Wu
- Shanghai Engineering Research Center of Biotransformation of Organic Solid Waste, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China; Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China; Engineering Research Center for Nanophotonics and Advanced Instrument, Ministry of Education, East China Normal University, Shanghai 200062, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, PR China
| | - Bing Xie
- Shanghai Engineering Research Center of Biotransformation of Organic Solid Waste, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China; Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, PR China; Engineering Research Center for Nanophotonics and Advanced Instrument, Ministry of Education, East China Normal University, Shanghai 200062, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, PR China.
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Werner KA, Schneider D, Poehlein A, Diederich N, Feyen L, Axtmann K, Hübner T, Brüggemann N, Prost K, Daniel R, Grohmann E. Metagenomic Insights Into the Changes of Antibiotic Resistance and Pathogenicity Factor Pools Upon Thermophilic Composting of Human Excreta. Front Microbiol 2022; 13:826071. [PMID: 35432262 PMCID: PMC9009411 DOI: 10.3389/fmicb.2022.826071] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 02/17/2022] [Indexed: 01/12/2023] Open
Abstract
In times of climate change, practicing a form of sustainable, climate-resilient and productive agriculture is of primordial importance. Compost could be one form of sustainable fertilizer, which is increasing humus, water holding capacity, and nutrient contents of soils. It could thereby strengthen agriculture toward the adverse effects of climate change, especially when additionally combined with biochar. To get access to sufficient amounts of suitable materials for composting, resources, which are currently treated as waste, such as human excreta, could be a promising option. However, the safety of the produced compost regarding human pathogens, pharmaceuticals (like antibiotics) and related resistance genes must be considered. In this context, we have investigated the effect of 140- and 154-days of thermophilic composting on the hygienization of human excreta and saw dust from dry toilets together with straw and green cuttings with and without addition of biochar. Compost samples were taken at the beginning and end of the composting process and metagenomic analysis was conducted to assess the fate of antibiotic resistance genes (ARGs) and pathogenicity factors of the microbial community over composting. Potential ARGs conferring resistance to major classes of antibiotics, such as beta-lactam antibiotics, vancomycin, the MLSB group, aminoglycosides, tetracyclines and quinolones were detected in all samples. However, relative abundance of ARGs decreased from the beginning to the end of composting. This trend was also found for genes encoding type III, type IV, and type VI secretion systems, that are involved in pathogenicity, protein effector transport into eukaryotic cells and horizontal gene transfer between bacteria, respectively. The results suggest that the occurrence of potentially pathogenic microorganisms harboring ARGs declines during thermophilic composting. Nevertheless, ARG levels did not decline below the detection limit of quantitative PCR (qPCR). Thresholds for the usage of compost regarding acceptable resistance gene levels are yet to be evaluated and defined.
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Affiliation(s)
- Katharina A. Werner
- Department of Microbiology, Faculty of Life Sciences and Technology, Berliner Hochschule für Technik, Berlin, Germany
| | - Dominik Schneider
- Department of Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Georg-August-University Göttingen, Göttingen, Germany
| | - Anja Poehlein
- Department of Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Georg-August-University Göttingen, Göttingen, Germany
| | - Nina Diederich
- Department of Microbiology, Faculty of Life Sciences and Technology, Berliner Hochschule für Technik, Berlin, Germany
| | - Lara Feyen
- Department of Microbiology, Faculty of Life Sciences and Technology, Berliner Hochschule für Technik, Berlin, Germany
| | - Katharina Axtmann
- Institute for Medical Microbiology, Immunology and Parasitology, University Hospital Bonn, Bonn, Germany
| | - Tobias Hübner
- Department of Environmental Microbiology, Helmholtz Centre for Environmental Research GmbH—Umweltforschungszentrum Leipzig (UFZ), Leipzig, Germany
| | - Nicolas Brüggemann
- Institute of Bio- and Geosciences—Agrosphere (IBG-3), Forschungszentrum Jülich, Jülich, Germany
| | - Katharina Prost
- Institute of Bio- and Geosciences—Agrosphere (IBG-3), Forschungszentrum Jülich, Jülich, Germany
| | - Rolf Daniel
- Department of Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Georg-August-University Göttingen, Göttingen, Germany
| | - Elisabeth Grohmann
- Department of Microbiology, Faculty of Life Sciences and Technology, Berliner Hochschule für Technik, Berlin, Germany
- *Correspondence: Elisabeth Grohmann,
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Flores-Orozco D, Levin D, Kumar A, Sparling R, Cicek N. A meta-analysis reveals that operational parameters influence levels of antibiotic resistance genes during anaerobic digestion of animal manures. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 814:152711. [PMID: 34974005 DOI: 10.1016/j.scitotenv.2021.152711] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 12/22/2021] [Accepted: 12/23/2021] [Indexed: 06/14/2023]
Abstract
Anaerobic digestion (AD) has shown the potential to reduce the numbers and types of antibiotic-resistance genes (ARG) present in animal manures. However, the variability of the results has limited the ability to draw solid conclusions. To address this issue, we performed a series of meta-analyses to evaluate how AD of pig, cattle, and dairy manures affects ARG levels and how different parameters, such as temperature, pH, digestion times, and the addition of other substances (e.g., solids, antibiotics) influence ARG changes. Twenty studies with enough details on changes in ARG levels during the AD process were identified and used for the meta-analyses. The results suggested that AD could significantly reduce ARG levels regardless of the conditions of the process. Also, thermophilic AD was more effective than mesophilic AD at reducing ARGs, although this difference was only significant for pig manures. The results also suggested that long digestion times (>50 days) yielded better ARG reduction rates, and that the addition of solids from an external source (co-digestion) negatively affected the efficiency of ARG reduction. In general, the results suggested that ARG changes during AD could be linked to the abundance and activity of hydrolytic communities.
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Affiliation(s)
- Daniel Flores-Orozco
- Department of Biosystems Engineering, University of Manitoba, Winnipeg, Manitoba R3T 5V6, Canada.
| | - David Levin
- Department of Biosystems Engineering, University of Manitoba, Winnipeg, Manitoba R3T 5V6, Canada
| | - Ayush Kumar
- Department of Microbiology, University of Manitoba, Winnipeg, Manitoba R3T 2N2, Canada
| | - Richard Sparling
- Department of Microbiology, University of Manitoba, Winnipeg, Manitoba R3T 2N2, Canada
| | - Nazim Cicek
- Department of Biosystems Engineering, University of Manitoba, Winnipeg, Manitoba R3T 5V6, Canada
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