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Leadbeater DR, Bruce NC. Functional characterisation of a new halotolerant seawater active glycoside hydrolase family 6 cellobiohydrolase from a salt marsh. Sci Rep 2024; 14:3205. [PMID: 38332324 PMCID: PMC10853513 DOI: 10.1038/s41598-024-53886-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 02/06/2024] [Indexed: 02/10/2024] Open
Abstract
Realising a fully circular bioeconomy requires the valorisation of lignocellulosic biomass. Cellulose is the most attractive component of lignocellulose but depolymerisation is inefficient, expensive and resource intensive requiring substantial volumes of potable water. Seawater is an attractive prospective replacement, however seawater tolerant enzymes are required for the development of seawater-based biorefineries. Here, we report a halophilic cellobiohydrolase SMECel6A, identified and isolated from a salt marsh meta-exo-proteome dataset with high sequence divergence to previously characterised cellobiohydrolases. SMECel6A contains a glycoside hydrolase family 6 (GH6) domain and a carbohydrate binding module family 2 (CBM2) domain. Characterisation of recombinant SMECel6A revealed SMECel6A to be active upon crystalline and amorphous cellulose. Mono- and oligosaccharide product profiles revealed cellobiose as the major hydrolysis product confirming SMECel6A as a cellobiohydrolase. We show SMECel6A to be halophilic with optimal activity achieved in 0.5X seawater displaying 80.6 ± 6.93% activity in 1 × seawater. Structural predictions revealed similarity to a characterised halophilic cellobiohydrolase despite sharing only 57% sequence identity. Sequential thermocycling revealed SMECel6A had the ability to partially reversibly denature exclusively in seawater retaining significant activity. Our study confirms that salt marsh ecosystems harbour enzymes with attractive traits with biotechnological potential for implementation in ionic solution based bioprocessing systems.
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Affiliation(s)
- Daniel R Leadbeater
- Centre for Novel Agricultural Products, Department of Biology, University of York, Heslington, York, YO10 5DD, UK.
| | - Neil C Bruce
- Centre for Novel Agricultural Products, Department of Biology, University of York, Heslington, York, YO10 5DD, UK.
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Müller C, Scapini T, Rempel A, Abaide ER, Camargo AF, Nazari MT, Tadioto V, Bonatto C, Tres MV, Zabot GL, Colla LM, Treichel H, Alves SL. Challenges and opportunities for third-generation ethanol production: A critical review. ENGINEERING MICROBIOLOGY 2023; 3:100056. [PMID: 39628516 PMCID: PMC11610999 DOI: 10.1016/j.engmic.2022.100056] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Revised: 10/24/2022] [Accepted: 10/27/2022] [Indexed: 12/06/2024]
Abstract
In recent decades, third-generation (3G) biofuels have become a more attractive method of fuel production, as algae cultivation does not infringe on resources needed for food production. Additionally, algae can adapt to different environments, has high photosynthetic efficiency (CO2 fixation), and has a high potential for carbohydrate accumulation. The prevalence of algae worldwide demonstrates its ability to adapt to different environments and climates, proving its biodiversity and versatility. Algae can be grown in wastewater, seawater, and even sewage, thus ensuring a lower water footprint and greater energy efficiency during algal biomass production. Because of this, the optimization of 3G ethanol production appears to be an excellent alternative to mitigate environmental impacts and increase energy and food security. This critical review presents (i) the stages of cultivation and processing of micro and macroalgae; (ii) the selection of yeasts (through engineering and/or bioprospecting) to produce ethanol from these biomasses; (iii) the potential of seawater-based facilities to reduce water footprint; and (iv) the mass and energy balances of 3G ethanol production in the world energy matrix. This article is, above all, a brainstorm on the environmental viability of algae bioethanol.
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Affiliation(s)
- Caroline Müller
- Laboratory of Yeast Biochemistry, Federal University of Fronteira Sul, Campus Chapecó, SC 484, Km 2, Chapecó, SC, Brazil
| | - Thamarys Scapini
- Laboratory of Microbiology and Bioprocess, Environmental Science and Technology, Federal University of Fronteira Sul, Campus Erechim, RS 135, 200, Erechim, RS, Brazil
| | - Alan Rempel
- Graduate Program in Civil and Environmental Engineering, University of Passo Fundo, BR 285, Passo Fundo, RS, Brazil
| | - Ederson Rossi Abaide
- Department of Chemical Engineering, Federal University of Santa Maria, 1000, Roraima Avenue, Santa Maria, RS 97105-900, Brazil
| | - Aline Frumi Camargo
- Laboratory of Microbiology and Bioprocess, Environmental Science and Technology, Federal University of Fronteira Sul, Campus Erechim, RS 135, 200, Erechim, RS, Brazil
| | - Mateus Torres Nazari
- Graduate Program in Civil and Environmental Engineering, University of Passo Fundo, BR 285, Passo Fundo, RS, Brazil
| | - Viviani Tadioto
- Laboratory of Yeast Biochemistry, Federal University of Fronteira Sul, Campus Chapecó, SC 484, Km 2, Chapecó, SC, Brazil
| | - Charline Bonatto
- Laboratory of Microbiology and Bioprocess, Environmental Science and Technology, Federal University of Fronteira Sul, Campus Erechim, RS 135, 200, Erechim, RS, Brazil
| | - Marcus Vinícius Tres
- Laboratory of Agroindustrial Processes Engineering, Federal University of Santa Maria, 1040, Sete de Setembro st., Cachoeira do Sul, RS, Brazil
| | - Giovani Leone Zabot
- Laboratory of Agroindustrial Processes Engineering, Federal University of Santa Maria, 1040, Sete de Setembro st., Cachoeira do Sul, RS, Brazil
| | - Luciane Maria Colla
- Graduate Program in Civil and Environmental Engineering, University of Passo Fundo, BR 285, Passo Fundo, RS, Brazil
| | - Helen Treichel
- Laboratory of Microbiology and Bioprocess, Environmental Science and Technology, Federal University of Fronteira Sul, Campus Erechim, RS 135, 200, Erechim, RS, Brazil
| | - Sérgio Luiz Alves
- Laboratory of Yeast Biochemistry, Federal University of Fronteira Sul, Campus Chapecó, SC 484, Km 2, Chapecó, SC, Brazil
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Scapini T, Dalastra C, Camargo AF, Kubeneck S, Modkovski TA, Júnior SLA, Treichel H. Seawater-based biorefineries: A strategy to reduce the water footprint in the conversion of lignocellulosic biomass. BIORESOURCE TECHNOLOGY 2022; 344:126325. [PMID: 34785329 DOI: 10.1016/j.biortech.2021.126325] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 11/07/2021] [Accepted: 11/09/2021] [Indexed: 06/13/2023]
Abstract
Biorefineries are an essential step towards implementing a circular economy in the long term. They are based on renewable raw materials and must be designed holistically, recovering building blocks from being converted into several products. Lignocellulosic biomass is considered a critical pillar for a biologically based economy and a high value-added feedstock. The separation of the structural complexity that makes up the biomass allows the development of different product flows. Chemical, physical, and biological processes are evaluated for fractionation, hydrolysis, and fermentation processes in biorefineries; however, the volume of freshwater used affects water safety and increases the economic costs. Non-potable-resources-based technologies for biomass bioconversion are essential for biorefineries to become environmentally and economically sustainable systems. Studies are being carried out to substitute freshwater with seawater to reduce the water footprint. Accordingly, this review addresses a comprehensive discussion about seawater-based biorefineries focusing on lignocellulosic biomass conversion in biofuel and value-added products.
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Affiliation(s)
- Thamarys Scapini
- Laboratory of Microbiology and Bioprocess (LAMIBI), Federal University of Fronteira Sul, Erechim, RS, Brazil; Bioprocess Engineering and Biotechnology Department, Federal University of Paraná, Curitiba, PR, Brazil
| | - Caroline Dalastra
- Laboratory of Microbiology and Bioprocess (LAMIBI), Federal University of Fronteira Sul, Erechim, RS, Brazil
| | - Aline Frumi Camargo
- Laboratory of Microbiology and Bioprocess (LAMIBI), Federal University of Fronteira Sul, Erechim, RS, Brazil; Department of Biological Science, Graduate Program in Biotechnology and Bioscience, Federal University of Santa Catarina, Florianópolis, SC, Brazil
| | - Simone Kubeneck
- Laboratory of Microbiology and Bioprocess (LAMIBI), Federal University of Fronteira Sul, Erechim, RS, Brazil
| | | | - Sérgio Luiz Alves Júnior
- Laboratory of Biochemistry and Genetics, Federal University of Fronteira Sul, Chapecó, SC, Brazil
| | - Helen Treichel
- Laboratory of Microbiology and Bioprocess (LAMIBI), Federal University of Fronteira Sul, Erechim, RS, Brazil; Department of Biological Science, Graduate Program in Biotechnology and Bioscience, Federal University of Santa Catarina, Florianópolis, SC, Brazil.
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Scapini T, Dos Santos MSN, Bonatto C, Wancura JHC, Mulinari J, Camargo AF, Klanovicz N, Zabot GL, Tres MV, Fongaro G, Treichel H. Hydrothermal pretreatment of lignocellulosic biomass for hemicellulose recovery. BIORESOURCE TECHNOLOGY 2021; 342:126033. [PMID: 34592451 DOI: 10.1016/j.biortech.2021.126033] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Revised: 09/21/2021] [Accepted: 09/23/2021] [Indexed: 06/13/2023]
Abstract
The hemicellulosic fraction recovery is of interest for integrated processes in biorefineries, considering the possibility of high economic value products produced from their structural compounds of this polysaccharide. However, to perform an efficient recovery, it is necessary to use biomass fractionation techniques, and hydrothermal pretreatment is highlighted as a valuable technique in the hemicellulose recovery by applying high temperatures and pressure, causing dissolution of the structure. Considering the possibility of this pretreatment technique for current approaches to hemicellulose recovery, this article aimed to explore the relevance of hydrothermal pretreatment techniques (sub and supercritical water) as a strategy for recovering the hemicellulosic fraction from lignocellulosic biomass. Discussions about potential products to be generated, current market profile, and perspectives and challenges of applying the technique are also addressed.
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Affiliation(s)
- Thamarys Scapini
- Laboratory of Microbiology and Bioprocess (LAMIBI), Federal University of Fronteira Sul, Erechim, RS, Brazil; Department of Biological Science, Graduate Program in Biotechnology and Bioscience, Federal University of Santa Catarina, Florianópolis, SC, Brazil
| | - Maicon S N Dos Santos
- Laboratory of Agroindustrial Processes Engineering (LAPE), Federal University of Santa Maria, Cachoeira do Sul, RS, Brazil
| | - Charline Bonatto
- Laboratory of Microbiology and Bioprocess (LAMIBI), Federal University of Fronteira Sul, Erechim, RS, Brazil
| | | | - Jéssica Mulinari
- Laboratory of Membrane Processes, Department of Chemical Engineering and Food Engineering, Federal University of Santa Catarina, Florianópolis, SC, Brazil
| | - Aline F Camargo
- Laboratory of Microbiology and Bioprocess (LAMIBI), Federal University of Fronteira Sul, Erechim, RS, Brazil; Department of Biological Science, Graduate Program in Biotechnology and Bioscience, Federal University of Santa Catarina, Florianópolis, SC, Brazil
| | - Natalia Klanovicz
- Laboratory of Microbiology and Bioprocess (LAMIBI), Federal University of Fronteira Sul, Erechim, RS, Brazil; Research Group in Advanced Oxidation Processes (AdOx), Department of Chemical Engineering, Escola Politécnica, University of São Paulo, São Paulo, SP, Brazil
| | - Giovani L Zabot
- Laboratory of Agroindustrial Processes Engineering (LAPE), Federal University of Santa Maria, Cachoeira do Sul, RS, Brazil
| | - Marcus V Tres
- Laboratory of Agroindustrial Processes Engineering (LAPE), Federal University of Santa Maria, Cachoeira do Sul, RS, Brazil
| | - Gislaine Fongaro
- Department of Biological Science, Graduate Program in Biotechnology and Bioscience, Federal University of Santa Catarina, Florianópolis, SC, Brazil; Laboratory of Applied Virology, Department of Microbiology, Immunology, and Parasitology, Federal University of Santa Catarina, Florianópolis, SC, Brazil
| | - Helen Treichel
- Laboratory of Microbiology and Bioprocess (LAMIBI), Federal University of Fronteira Sul, Erechim, RS, Brazil; Department of Biological Science, Graduate Program in Biotechnology and Bioscience, Federal University of Santa Catarina, Florianópolis, SC, Brazil.
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