Bacterial ecosystem functioning in organic matter biodegradation of different composting at the thermophilic phase

Application of microbial agents in organic solid waste composting: a review

The rapid growth of organic solid waste has recently exacerbated environmental pollution problems, and its improper treatment has led to the loss of a large number of biomass resources. Here, we expound the advantages of microbial agents composting compared with conventional organic solid waste treatment technology, and review the important role of microbial agents composting in organic solid waste composting from the aspects of screening and identification, optimization of conditions, mechanism of action, combination with other technologies and ultra-high-temperature and ultra-low-temperature microbial composting. We discuss the value of microorganisms with different growth conditions in organic solid waste composting, and put forward a seasonal multi-temperature composite microbial composting technology. Provide new ideas for the all-round treatment of microbial agents in organic solid waste in the future. © 2024 Society of Chemical Industry.

Fenton-ultrasound treatment of corn stalks enhances humification during composting by stimulating the inheritance and synthesis of polyphenolic compounds-preliminary evidence from a laboratory trial

The impact of Fenton-ultrasound treatment on the production of polyphenols and humic acid (HA) during corn stalk composting was investigated by analyzing the potential for microbial assimilation of polysaccharides in corn stalks to generate polyphenols using a13C-glucose tracer. The results showed that Fenton-ultrasound treatment promoted the decomposition of lignocellulose and increased the HA content, degree of polymerization (DP), and humification index (HI). The primary factor could be attributed to Fenton-ultrasound treatment-induced enhanced the abundance of lignocellulose-degrading microorganisms, as Firmicutes, Actinobacteria phylum and Aspergillis genus, which serve as the primary driving forces behind polyphenol and HA formation. Additionally, the utilization of a13C isotope tracer revealed that corn stalk polysaccharide decomposition products can be assimilated by microbes and subsequently secrete polyphenolic compounds. This study highlights the potential of microbial activity to generate phenolic compounds, offering a theoretical basis for increasing polyphenol production and promoting HA formation during composting.

Effects of initial corncob particle size on the short-term composting for preparation of cultivation substrates for Pleurotus ostreatus

The short-term composting based on corncob for preparing Pleurotus ostreatus cultivation medium originated from agricultural production practices and so lacked systematic investigation. In this study, the influences of a Dafen (15 mm, DFT) and Xiaofen (5 mm, XFT) initial particle size (IPS) of corncob on the microbial succession and compost quality were examined. Results demonstrated that XFT compost was better suited for mushroom cultivation due to its high biological efficiency of 70 % and the absence of contamination. The composting microbes differed significantly between the DFT and XFT composts. During composting, the genera of Bacillus, Acinetobacter, Lactobacillus, Streptomyces, and Paenibacillus were majorly found in the DFT compost, while Acinetobacter, Lactobacillus, Puccinia, Bacteroides, and Bacillus genera dominated the XFT compost. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that throughout the thermophilic phase, XFT compost had much greater relative abundances of sequences relevant to energy, carbohydrate, and amino acid metabolism than DFT compost. Analysis of network correlations and Mantel tests indicated that IPS reduction could increase microbial interactions. Overall, adjusting the IPS of corncob to 5 mm increased microbial interactions, improved compost quality, and thereby boosted the P. ostreatus yield. These findings will be pertinent in optimizing the composting process of cultivation medium for P. ostreatus.

Integrating bioprocess and metagenomics studies to enhance humic acid production from rice straw

Rice straw burning annually (millions of tons) leads to greenhouse gas emissions, and an alternative solution is producing humic acid with high added-value. This study aimed to examine the influence of a microbial consortium and other additives (chicken manure, urea, olive mill waste, zeolite, and biochar) on the composting process of rice straw and the subsequent production of humic acid. Results showed that among the fungal species, Thermoascus aurantiacus exhibited the most prominent impact in expediting maturation and improving compost quality, and Bacillus subtilis was the most abundant bacterial species based on metagenomics analysis. The highest temperature, C/N ratio reduction, and amount of humic acid production (Respectively in lab 61 °C, 54.67%, 298 g kg-1 and in pilot level 65 °C, 72.11%, 310 g kg-1) were related to treatments containing these microorganisms and other additives except urea. Consequently, T. aurantiacus and B. subtilis can be employed on an industrial scale as compost additives to further elevate quality. Functional analysis showed that the bacterial enzymes in the treatments had the highest metabolic activities, including carbohydrate and amino acid metabolism compared to the control. The maximum enzymatic activities were in the thermophilic phase in treatments which were significantly higher than that in the control. The research emphasizes the importance of identifying and incorporating enzymatically active strains that are suitable for temperature conditions, alongside the native strains in decomposing materials. This strategy significantly improves the composting process and yields high-quality humic acid during the thermophilic phase.

Effect of simplified inoculum agent on performance and microbiome during cow manure-composting at industrial-scale

A simplified inoculum agent, only comprising Bacillus subtilis and Aspergillus niger, was utilized for industrial-scale cow-manure composting to investigate its impact on composting performance and microbiome. Inoculants elevated the average and peak temperatures by up to 7 and 10 °C, respectively, during the thermophilic stage, reduced organic matter content, and raised germination index. Inoculation also extended the period of composting above 50 °C from 12 to 26 days. Sequencing unveiled significant shifts in microbial diversity, composition, and function. Aspergillus thrived during the mesophilic phase, potentially initiating composting, whereas Bacillus, Lysinibacillus, and Clostridium were enriched during the thermophilic stage. Metagenomic sequencing revealed an increased abundance of carbohydrate-active enzymes and glycometabolism-related genes responsible for lignocellulose degradation and heat generation after inoculation. These enriched microbes and functional genes contributed to organic matter degradation and temperature maintenance during thermophilic stage, expediting composting. This suggests the effectiveness of this simplified inoculum in industrial-level cow-manure composting.

Green waste and sewage sludge feeding ratio alters co-composting performance: Emphasis on the role of bacterial community during humification

Composting with five levels of green waste and sewage sludge was compared to examine how feeding ratios affected composting performance with special focus on humification, and the underlying mechanisms. The results showed that the raw material ratio persistently affected compost nutrients and stability. Humification and mineralization were promoted by higher proportion of sewage sludge. Bacterial community composition and within-community relationships were also significantly affected by the raw material feeding ratio. Network analysis indicated that clusters 1 and 4 which dominated by Bacteroidetes, Proteobacteria, and Acidobacteria shown significantly positive correlation with humic acid concentration. Notably, the structural equational model and variance partitioning analysis demonstrated that bacterial community structure (explained 47.82% of the variation) mediated the effect of raw material feeding ratio on humification, and exceeded the effect of environmental factors (explained 19.30% of the variation) on humic acid formation. Accordingly, optimizing the composting raw material improves the composting performance.

Bacterial community dynamics and co-occurrence network patterns during different stages of biochar-driven composting

Bacterial communities were dynamically tracked at four stages of biochar-driven sheep manure pile composting, and the co-occurrence networks with keystone taxa were established. The succession of bacterial community obvious varied during the composting process, Proteobacteria predominant in initial stage (39%) then shifted into Firmicutes in thermophilic (41%) and mesophilic (27%) stages, finally the maturation stage dominant by Bacteroidota (26%). Visualizations of bacterial co-occurrence networks demonstrate more cooperative mutualism and complex interactions in the thermophilic and mesophilic phases. Noticeably, the 7.5 and 10% biochar amended composts shown highest connections (736 and 663 total links) and positive cooperation (97.37 and 97.13% positive link) as well as higher closeness centrality and betweenness centrality of keystone taxa. Overall, appropriate biochar addition alters bacterial community succession and strengthens connection between keystone taxa and other bacteria, with 7.5 and 10% biochar amended composts has intense mutualistic symbiosis among bacterial communities.

Critical review with science mapping on the latest pre-treatment technologies of landfill leachate

The most frequent strategy for solid waste management, adopted across the globe is landfill. Through microbial decomposition municipal solid waste degrades, producing end products such as carbon dioxide, methane, volatile organic compounds, and leachate. High levels of organic waste and heavy metals content in leachate can cause pervasive damage to the ecosystem and contaminate groundwater. Leachate requires extensive treatment before being released into the environment because of its complex chemical composition and identifying the appropriate technologies for leachate treatment remains a key problem for municipal landfill operations. Given the possible harm caused by substantially contaminated leachate, it should adhere to stricter quality criteria for direct disposal of leachate and one treatment method cannot efficiently tackle all the pollutants. In order to reduce the landfill leachates high fouling power, pre-treatment of landfill leachate is necessary. The study provides a comprehensive review of pre-treatment technologies, as well as a critical assessment of strengths and limitations. Current review-based analysis was undertaken based on the filtered 395 papers published for science mapping and to evaluate the qualitative studies in the area of pre-treatment of Landfill Leachate till 2022. A three-step process was employed to conduct bibliometric analysis, qualitative valuation, and identification of influential and productive journals, countries, researchers and articles, emerging technology, and outlining some of the major research gaps in the research field.

Insights into the influence of digestate-derived biochar upon the microbial community succession during the composting of digestate from food waste

The by-product from the anaerobic digestion of food waste (FW) called the digestate (DFW) needs proper disposal because of its high environmental burden. Composting can transform DFW into a nutrient-containing soil improver via a series of microbial metabolic activities. However, the long composting time and high amount of ammonia emission are the key concerns of DFW composting. In the present study, the effect of DFW-derived biochar (BC-DFW) on microbial succession and its involvement in nitrogen transformation and humification during DFW composting were investigated. The results indicated that the BC-DFW accelerated bacterial and fungal evolution, and the bacterial diversity was augmented by increasing the amount of BC-DFW. In particular, Cryomorpha, Castellaniella, Aequorivita, and Moheibacter were enriched by the addition of BC-DFW, thereby enhancing the degradation of organic matter and nitrogen transformation and increasing the germination index. The group with 25% BC-DFW contained a higher relative abundance of Cryomorpha (2.08%, 2.47%) than the control (0.39%, 1.72%) on days 19 and 35 which benefited the degradation of organic matter. The group with 25% BC-DFW quickly enhanced the growth of Nitrosomonas, thereby accelerating the conversion of ammonium-nitrogen to nitrate-nitrogen and reducing the phytotoxicity of the composting product.

Reducing nitrogen loss during kitchen waste composting using a bioaugmented mechanical process with low pH and enhanced ammonia assimilation

Exploring the regulation of nitrogen transformation in bioaugmented mechanical composting (BMC) process for rural kitchen waste (KW) is essential to avoid the "not-in-my-backyard" phenomenon caused by nitrogen loss. Herein, nitrogen transformation and loss in BMC versus conventional pile composting (CPC) of KW were compared. The results showed that the total nitrogen loss in the BMC was 6.87-39.32 % lower than that in the CPC. The main pathways to prevent nitrogen loss in the BMC were reducing NH₃ by avoiding a sharp increase in pH followed by transforming the preserved NH₄⁺-N into recalcitrant nitrogen reservoir via enhanced ammonia assimilation. The enriched thermophilic bacteria with mineralization capacities (e.g., Bacillus and Corynebacterium) during rapid dehydration and heating in the BMC accumulated organic acids and easy-to-use carbon sources, which could lead to lower pH and ammonia assimilation enhancement, respectively. This study provides new ideas for formulating low-cost nitrogen conservation strategies in decentralized KW composting.

Deciphering the effect of exogenous lignocellulases addition on the composting efficiency and microbial communities

This study aimed to reveal the potential effects of exogenous lignocellulases addition on the composting efficiency and microbial communities. The lignocellulases addition at the mesophilic phase (MEP) greatly expedited the substrate conversion and the rise of temperature at the initial stage, driving the early arrival of thermophilic phase (THP), caused by the positive effects of Sphingobacterium and Brevundimonas. When being added at the THP, the potential functions and interactions of microbial communities were stimulated, especially for Thermobispora and Mycothermus, which prolonged the duration of the THP and expedited the humic acid formation. Simultaneous addition (MEP and THP) significantly altered the microbial community succession and activated the microbes that contributed to the lignocellulases secretion, exhibiting the highest cellobiohydrolase (36.19 ± 3.25 U· g^-1 dw) and xylanase (47.51 ± 3.32 U·g^-1 dw) activity at the THP. These findings provide new strategies that can be effectively utilized to improve the efficiency and quality of composting.

A phospho-compost biological-based approach increases phosphate rock agronomic efficiency in faba bean as compared to chemical and physical treatments

Under arid and semi-arid conditions, direct application of phosphate rock (PR) as a source of phosphorus (P) for crop production is likely influenced by agricultural practices and soil properties. Different approaches could be used to improve the agronomic efficiency of low-grade PR over a wider range of soils and crops. In this study, biological, physical, and chemical treatments of low-grade Moroccan PR were investigated and compared through agronomic trials on faba bean grown under alkaline soil conditions. The physical treatment was based on blending PR with triple superphosphate (TSP) at 75:25 and 50:50 ratios, the biological treatments involved co-application of PR with compost at 50:50 ratio and phospho-compost elaborated from PR (20%), sewage sludge (46%), and wheat residues (34%), while the chemical treatment was obtained by a 30% acidulation of PR by phosphoric acid. Control treatments consisting of zero P application (control), PR alone, and TSP alone were considered to assess the effectiveness of the abovementioned techniques to improve PR agronomic efficiency. A pot experiment was conducted in sandy soil (Jorf Lasfar, central Morocco) for 60 days in a completely randomized design considering eight treatments. All treatments, except the control, were amended with 52 mg kg^-1 of P from different PR-based fertilizers before sowing. At the flowering stage (60-day-old plants), results indicated that all PR treatments significantly improved plant growth, root nodulation, and nutrient uptake compared to the control. The relative agronomic efficiency of pretreated PR was significantly higher with phospho-compost treatment (86%) than the partially acidulated PR (78%) or the PR/TSP blend 50:50 (64%). Likewise, P uptake, P use efficiency, number of root nodules, and N uptake all were improved under PR treatments. Our finding revealed that the biological technique based on phospho-compost yielded better compared to chemical and physical treatments.

Exploring the dynamic of microbial community and metabolic function in food waste composting amended with traditional Chinese medicine residues

The aim of this study was to explore the dynamic of microbial community and metabolic function in food waste composting amended with traditional Chinese medicine residues (TCMRs). Results suggested that TCMRs addition at up to 10% leads to a higher peak temperature (60.5 °C), germination index (GI) value (119.26%), and a greater reduction in total organic carbon (TOC) content (8.08%). 10% TCMRs significantly induced the fluctuation of bacterial community composition, as well as the fungal community in the thermophilic phase. The addition of 10% TCMRs enhanced the abundance of bacterial genera such as Acetobacter, Bacillus, and Brevundimonas, as well as fungal genera such as Chaetomium, Thermascus, and Coprinopsis, which accelerated lignocellulose degradation and humification degree. Conversely, the growth of Lactobacillus and Pseudomonas was inhibited by 10% TCMRs to weaken the acidic environment and reduce nitrogen loss. Metabolic function analysis revealed that 10% TCMRs promoted the metabolism of carbohydrate and amino acid, especially citrate cycle, glycolysis/gluconeogenesis, and cysteine and methionine metabolism. Redundancy analysis showed that the carbon to nitrogen (C/N) ratio was the most significant environmental factor influencing the dynamic of bacterial and fungal communities.

Succession of the Bacterial Communities and Functional Characteristics in Sheep Manure Composting

Bacterial community is a key factor affecting aerobic composting, and understanding bacterial community succession is important to revealing the mechanism of organic matter degradation. In this study, the succession and metabolic characteristics of bacterial communities were explored in 45 days composting of sheep manure and wheat straw by using high-throughput sequencing technology and bioinformatics tools, respectively. Results showed that the alpha diversity of bacterial community significantly decreased in the thermophilic (T2) phase and then recovered gradually in the bio-oxidative (T3) and the maturation (T4) phases. Bacterial communities varied at different stages, but there were 158 genera in common bacterial species. Unclassified_f_Bacillaceae, Oceanobacillus, Bacillus, Pseudogracilibacillus, and Nocardiopsis were identified as keystone bacterial genera. Eleven genera were significantly correlated (p < 0.05), or even extremely significantly correlated (p < 0.001), with the physicochemical factors. Redundancy analysis (RDA) showed that changes of bacterial community diversity correlated with physicochemical factors. The highest relative abundances were amino acid and carbohydrate metabolism among the metabolic groups in the compost. These results will provide theoretical support for further optimizing sheep manure composting conditions and improving the quality of organic fertilizers.

Co-composting with cow dung and subsequent vermicomposting improve compost quality of spent mushroom

In order to determine a feasible degrading process for spent mushroom (SMS) with high lignin content, the present work used cow dung (CD), SMS, and a mixture of CD and SMS as substrates and evaluated the effects of vermicomposting on the microflora and the quality of composting products. Bacterial (R² = 0.548, P = 0.001) and fungal (R² = 0.314, P = 0.005) community both were different between composting and vermicomposting. Vermicomposting and substrates affected enzyme activities indirectly by affecting ammonium, pH, total carbon, richness, and bacterial community composition. These results suggested that appropriate regulation of environmental factors may increase microbial activity. An increase in ion-exchange capacity (up to 139.8%), pH (6.9%), and nitrate (71.1%) and a decrease in total carbon (31.2%) and carbon/nitrogen ratio (32.1%) in vermicomposting indicated that earthworms could further improve product quality. Co-composting with CD and integrated subsequent vermicomposting efficiently promoted the maturity of SMS.

Predicting the humification degree of multiple organic solid waste during composting using a designated bacterial community

Microbes are the drivers for disposing of organic solid waste (OSW) during aerobic fermentation. Notwithstanding, the significance of microbes is underestimated in numerous studies on aerobic fermentation product assessments. Here, we investigated the humification degree (HD), and the humic acid content was assessed in terms of the bacterial community. The bacterial communities were useful indicators for making predictions and even correctly determined the categories of OSWs with 94% accuracy. The bacterial codes can also provide a better prediction of HD. Our results demonstrate that the bacteria code is a reliable biological method to assess HD effectively. Bacterial codes can be used as ecological and biological indicators to evaluate the quality of aerobic fermentation of different materials.

The functions of potential intermediates and fungal communities involved in the humus formation of different materials at the thermophilic phase

Humus is the final product of humus precursors (HPS) during the humification process, while the associated mechanisms of humus formation have not been clarified. Here, the HPS degradation intermediate and core fungal function for wheat straw and chicken manure compost (SCM), cow dung compost (CD), Chinese traditional medicine residue compost (CTM) and mushroom dreg and chicken manure compost (MCM) was investigated during the thermophilic phase. The results showed SCM and MCM were rich in proteins, lipids, cellulose, low-molecular-weight organic acids, while CD and CTM contained abundant carbohydrates, aliphatic compounds, easily biodegradable aromatic structures, and intermediates from the lignocellulose degradation. In particular, the HPS degrading intermediates including O-alkyl-C and aromatic C compounds were the critical factors, and Scedosporium, Hypsizygus and Remersonia were the core fungal genera for the humification. Furthermore, the potential fungal functional genes involved in carbohydrate and lignin degradation might be the key factors to drive the humification process.

Indigenous cellulolytic aerobic and facultative anaerobic bacterial community enhanced the composting of rice straw and chicken manure with biochar addition

Microbial degradation of organic matters is crucial during the composting process. In this study, the enhancement of the composting of rice straw and chicken manure with biochar was evaluated by investigating the indigenous cellulolytic bacterial community structure during the composting process. Compared with control treatment, composting with biochar recorded higher temperature (74 °C), longer thermophilic phase (> 50 °C for 18 days) and reduced carbon (19%) with considerable micro- and macronutrients content. The bacterial community succession showed that composting with biochar was dominated by the cellulolytic Thermobifida and Nocardiopsis genera, which play an important role in lignocellulose degradation. Twenty-three cellulolytic bacterial strains were successfully isolated at different phases of the composting with biochar. The 16S rRNA gene sequencing similarity showed that they were related to Bacilluslicheniformis, Bacillussubtilis,Bacillusaerius, and Bacillushaynesii, which were known as cellulolytic bacteria and generally involved in lignocellulose degradation. Of these isolated bacteria, Bacilluslicheniformis, a facultative anaerobe, was the major bacterial strain isolated and demonstrated higher cellulase activities. The increase in temperature and reduction of carbon during the composting with biochar in this study can thus be attributed to the existence of these cellulolytic bacteria identified.

Deciphering the dominant components and functions of bacterial communities for lignocellulose degradation at the composting thermophilic phase

The decomposition and transformation of organic matters during composting process are performed by various microorganisms. However, the bacterial communities and their functions usually vary with composting materials. Here the dominant bacterial genera and their functions were identified at the thermophilic phase during composting of mulberry branches with silkworm excrement (MSE), pig manure (MPM) and cow manure (MCD). The activities of β-glucosidase and endoglucanase were highest for MCD (1.31 and 17.15 µg g^-1 min^-1) and lowest for MPM (0.92 and 14.22 µg g^-1 min^-1). Random Forest model and correlation analysis revealed that Stenotrophomonas, Bacillus, and Sinibacillus were the dominant bacterial genera involved in lignocellulose degradation regardless of composting materials. Carbohydrate metabolism, amino acid metabolism, and DNA replication and repair were primary functions of the bacterial communities for the three types of composting. The quantification of lignocellulose degradation genes further verified the dominant functions of the bacterial communities.

New insight into the impact of moisture content and pH on dissolved organic matter and microbial dynamics during cattle manure composting

Composting is an effective way to treat agricultural waste, whereas inappropriate initial conditions could cause lower maturity and system instability. In this study, the dissolved organic matter dynamics and microbial community succession of cattle-manure composting were investigated under different initial moisture content (MC) and pH of raw material. The results indicated that the extended duration of thermophilic phase and the highest GI (germination index) value of final product were observed at matrix 60% MC and pH 8.5 (AT2 treatment). Microbial analysis showed that the succession of bacterial and fungal community was significantly influenced by total carbon (TN), pH and MC (P < 0.05). The relationship between microbial community and fluorescence regional integration (FRI) parameters demonstrated that Thermobifida (bacterial genus), Mycothermus and Thermomyces (fungal genera) were positively correlated with P_{V, n} (the integral aera of Region V). This study could provide a potential strategy for large-scale industrial application of compost.

Different Effects of Thermophilic Microbiological Inoculation With and Without Biochar on Physicochemical Characteristics and Bacterial Communities in Pig Manure Composting

This study evaluated the effects of thermophilic microbiological inoculation alone (TA) and integrated with biochar (TB) on the physicochemical characteristics and bacterial communities in pig manure (PM) composting with wheat straw. Both TA and TB accelerated the rate of temperature increase during the PM composting. TA significantly reduced total nitrogen loss by 18.03% as opposed to TB which significantly accelerated total organic carbon degradation by 12.21% compared with the control. Firmicutes, Bacteroidetes, Actinobacteria, and Proteobacteria were the major phyla in composting. Variation of the relative abundance of genera depended on the composting period and treatment. The genera Lactobacillus (26.88-46.71%) and Clostridium_sensu_stricto (9.03-31.69%) occupied a superior position in the temperature rise stage, and Bacillus (30.90-36.19%) was outstanding in the cooling stage. Temperature, total nitrogen (TN), and ammonium nitrogen significantly influenced the bacterial phyla composition. TN, water content, and nitrite nitrogen were the main drivers of the bacterial community genera. Furthermore, our results demonstrated that microbiological consortia were resistant to high temperatures and could fix nitrogen for enriched Pseudomonas; however, when interacted with biochar, total organic carbon (TOC) degradation was accelerated for higher bacterial richness and diversity as well as overrepresented Corynebacterium.

Enhanced depletion of antibiotics and accelerated estabilization of dissolved organic matter by hydrothermal pretreatment during composting of oxytetracycline fermentation residue

In this study, the feasibility of employing hydrothermal pretreatment (HTPT) to improve the composting of oxytetracycline fermentation residue (OFR) was evaluated by investigating the depletion of oxytetracycline (OTC) and evolution of dissolved organic matter (DOM). HTPT drastically declined the final content of OTC and its main transformation intermediates in OFR compost from 89.96 to 2.61 mg/kg. Although HTPT slightly increased the DOM content and significantly decreased the contents of biodegradable and humified compounds in OFR compost, it did not significantly change the germination index of OFR compost. Nevertheless, the time required for the overall pattern of DOM parameters to reach stabilization was shortened from 28 to 14 days by HTPT. Taken together, although HTPT did not change the maturity degree of OFR compost, it obviously shortened the OFR composting cycle and lowered the potential risk of OFR compost, confirming that HTPT could efficiently improve the OFR composting.

Involvement of the metabolically active bacteria in the organic matter degradation during olive mill waste composting

RNA-based high-throughput sequencing is a valuable tool in the discernment of the implication of metabolically active bacteria during composting. In this study, "alperujo" composting was used as microbial model for the elucidation of structure-function relationships with physicochemical transformation of the organic matter. DNA and RNA, subsequently retrotranscribed into cDNA, were isolated at the mesophilic, thermophilic and maturation phases. 16S rRNA gene was amplified by quantitative PCR (qPCR) and Illumina MiSeq platform to assess bacterial abundance and diversity, respectively. The results showed that the abundance of active bacteria assessed by qPCR was maximum at thermophilic phase, which confirm it as the most active stage of the process. Concerning diversity, Proteobacteria, Firmicutes, Bacteroidetes and Actinobacteria were the main phyla presented in composts. Concomitantly, three different behaviours were observed for bacterial dynamics: some genera decreased during the whole process meanwhile others proliferated only at thermophilic or maturation phase. Statistical correlation between physicochemical transformations of the organic matter and bacterial diversity revealed bacterial specialisation. This result indicated that specific groups of bacteria were only involved in the organic matter degradation during bio-oxidative phase or humification at maturation. Metabolic functions predictions confirmed that active bacteria were mainly involved in carbon (C) and nitrogen (N) cycles transformations, and pathogen reduction.

Two types nitrogen source supply adjusted interaction patterns of bacterial community to affect humifaction process of rice straw composting

This study investigated effects of high-nitrogen source (urea) (R_UR) and protein-like nitrogen source (chicken manure) (R_CM) on humification process during lignocellulose biomass composting. It demonstrated that decreasing ratio of crude fiber (CF), polysaccharide (PS) and amino acids (AAs) in R_CM (29.75%, 53.93% and 73.73%, respectively) was higher than that in R_UR (14.73%, 28.74% and 51.92%, respectively). Humic substance (HS) concentration increased by 7.51% and 73.05% during R_UR and R_CM composting, respectively. The lower total links, more independent modularization and higher proportion of positive correlations between functional bacteria and organic components was observed with R_CM network than R_UR, indicating that protein-like nitrogen source supply may alleviate competition within bacterial community. Moreover, chicken manure supply favorably selects greater special functional bacterial taxa (Pusillimonas, Pedomicrobium, Romboustia and other 24 genus) related to AAs and stimulates the collaborative division of bacterial community. This is significance for strengthening effective transformation of organic components.

Community-level dormancy potential regulates bacterial beta-diversity succession during the co-composting of manure and crop residues

This study aimed to disclose the bacterial diversity succession during the co-composting of manure and crop residues and to provide new insight into the role of community-level dormancy potential in diversity succession. Illumina sequencing and PICRUSt-estimated metagenomes were used for this purpose. The bacterial richness and phylogenetic diversity decreased in the early and middle stages of composting and were maintained to a stable status in the late stage. Both composting phases and raw materials impacted the aforementioned alpha diversity significantly, while the composting phases had a greater (80%-94%) impact than the raw materials (1%-18%). Bacterial beta-diversity succession exhibited selectivity as the composting proceeded, and the dominant taxa changed into salt- and heat-resistant genera such as Bacillus, Glycomyces, and Halocella. Meanwhile, Georgenia, Actinomadura, and Ruminofilibacter were identified as the dominant predictor taxa of bacterial community succession in composting. Roughly, the abundance of genes underlying dormancy strategies, including sporulation factors (spo0A gene), toxin-antitoxin systems (dinJ/yafP, mazF/E, hipA/O, and relA/E genes), and resuscitation-promoting factors (rpfC gene), increased as composting proceeded and reached the highest in the thermophilic or maturation phases. Co-occurring relationships between bacterial communities and genes underlying dormancy strategies in different composting phases comprised multiple associations dominated by positive edges (50%-97%). The stability in genes underlying dormancy strategies and aggregate dormancy potential had a positive linear correlation with that in bacterial beta diversity (R² = 0.26-0.42; P < 0.05), but not related significantly to that in richness and phylogenetic diversity. This study highlighted the importance of understanding how community-level dormancy strategies mediated microbial succession in composting to better predict compost maturity and product quality.

Effect of liquid volume and microflora source on degradation rate and microbial community in corn stover degradation

Degradation is the bottleneck in the utilization of crop straw. In this paper, we screened the microbial consortia degrading corn stover from straw degrading consortia MC1 (M), sheep feces (Y), and mixtures (Q) of M, Y, and cattle feces. The effects of microflora source and liquid volume (representing dissolved oxygen) on the microbial community and degradation rate of corn stover were investigated. The results showed that the degradation rate and cellulase activity of a 200 mL liquid volume (L2) were significantly higher than that of 100 mL (L1). Microflora source had a significant effect on bacterial and fungal diversity, composition and taxa. Q and Y had higher bacterial and fungal α-diversity than that of M. The degradation rate was significantly correlated with cellulase activity but not with microbial diversity. This indicated that liquid volume had a significant effect on degradation rate while microflora source had a significant effect on microbial community in corn stover degradation.