Oxytetracycline stress reconstruct the core microbial community related to nitrogen transformation during composting

Exploring the function of key species in different composting stages for effective waste biotransformation

Composting is a microbial-driven process that plays a vital role in recycling waste and promoting sustainable production. To develop more effective bioaugmentation strategies, this study examined three successive stages in an aerobic composting system, focusing on microbial community adaptation to high-temperature stress (mode_2) and nutrient-poor conditions (mode_3). The results revealed a shift from an r-strategy (rapid growth) to a K-strategy (thriving under resource-limited conditions). Community succession was predominantly driven by deterministic processes (>90 %) and exhibited strong cooperative interactions. Using multiple statistical approaches, key species were identified for each condition. These species enhanced microbial network connectivity under environmental stresses, increasing network edges by 29 %-35 %. Under high-temperature stress, Bacillus and Ureibacillus maintained core functions, while Chelativorans and Aeribacillus contributed to key metabolic pathways, including amino acid metabolism. In nutrient-poor conditions, Saccharomonospora and Pseudoxanthomonas enhanced overall system functionality, and Novibacillus played a key role in carbon and nitrogen cycling, particularly nitrogen fixation. Predictive models for microbial community stability (R2 = 0.68-0.97) were developed based on these key species to enable rapid assessment of system stability. Overall, this study identifies essential microbes involved in composting across different environmental conditions and clarifies their functional roles, providing valuable insights for optimizing aerobic composting efficiency and advancing waste resource management.

A microbial-driven persulfate activating-cycling system for in-depth oxytetracycline degradation and bacterial antibiotic resistance control

Insufficient biodegradability of antibiotics (e.g., oxytetracycline, OTC) and the accompanying antibiotic resistance gene (ARG) spreading risk have been a serious concern in wastewater treatment plants. This study developed a microbial-driven persulfate activating-cycling system (MPCS) relying on the iron-reducing capacity of Shewanella oneidensis to sustainably degrade OTC and prevent ARG elevation. In MPCS, a nanosized bio-magnet shell (20-60 nm) was bio-generated and incorporated with S. oneidensis to activate peroxydisulfate and produce free radicals to attack OTC, removed by 98.78 % in 120 min. S. oneidensis metabolism re-generated the bio-magnet and cleared the toxic intermediates. Despite the stress of OTC and free radicals, S. oneidensis sustained (live/death ratio of 74.50 %: 25.50 %) under bio-magnet shell protection, showing a strong energy metabolism and iron-reducing strength. The tight coupling of biodegradation and advanced oxidation process (AOP) greatly improved degrading efficiency (132.65 %-2369.44 % higher than single biodegradation or AOP). MPCS continuously operated 5 cycles efficiently, exhibiting a diverse degrading pathway with less toxic intermediates than the single treatment. Notably, MPCS functioned well without peroxydisulfate, as the S. oneidensis produces low-level hydrogen peroxide as the AOP substrate, achieving favorable OTC elimination. Especially, the expression of sixteen tetracycline-related ARGs dropped by 62.94 %-100 % in MPCS than biodegradation, indicating resistance control advantage under bio-magnet shell protection and the synergism effect of AOP and biodegradation. This study spontaneously recyclably combined biodegradation and AOP to simultaneously eliminate antibiotics and ARGs, which provided a potential approach to control the drug resistance risk.

Aerobic composting with hydrothermal carbonization aqueous phase conditioning: Stabilized active gaseous nitrogen emissions

The losses of reactive gaseous nitrogen (N), including ammonia (NH3) and nitrous oxide (N2O), represent a pressing environmental issue during composting. However, the impact of hydrothermal carbonization aqueous phase (HAP) on compost gaseous N emissions and the underlying mechanisms remain largely unexplored. Herein, Quercus acutissima leaves-derived HAP and its modified HAP (MHAP) were added to the chicken manure compost at 5 % (w/w) and 10 % (w/w) applied rates to observe changes in NH3 and N2O fluxes, compost properties and bacterial communities. Results showed that high application of HAP significantly decreased compost cumulative NH3 volatilization by 23-26 % compared to the control and MHAP. Compost NH3 and N2O emissions were significantly influenced by compost temperature and inorganic N concentrations. Moreover, HAP and MHAP at high rates reduced the relative abundance of Bacteroidota (5-29 %) and Proteobacteria (11-35 %), compared to those at low rates. Compost environmental factors and bacterial diversity were identified as dominant factors affecting gaseous N emissions, with 54 % and 25 % explanatory rates, respectively. Furthermore, high application rates of HAP are expected to reduce annual NH3 emissions from poultry manure compost by 40000 t. These findings provide insights into rational resource utilization of HAP and gaseous N emission reduction from composting.

Dynamics of antibiotic resistance genes during manure composting: Reduction in herbivores manure and accumulation in carnivores

The elevated levels of antibiotic resistance genes (ARGs) in livestock manure represent a significant threat to both the environment and human health. Composting has been recognized as an effective strategy to mitigate the abundance of ARGs in manure. However, notable rebounds in ARGs abundance have been observed during this process. This study explored the changes in ARGs abundance and the underlying influencing factors during the composting of carnivore (chicken and pig) and herbivore (sheep and cow) manures, along with mushroom residues. The findings revealed that the total relative abundance of ARGs increased by 6.96 and 10.94 folds in chicken and pig manure composts, respectively, whereas it decreased by a remarkable 91.72% and 98.37% in sheep and cow manure composts. Nitrogen content emerged as the primary physicochemical factors governing the abundance of ARGs in chicken and pig manure composts. Conversely, carbon content played a pivotal role in determining ARGs abundance in chicken and pig manure composts. Furthermore, the presence of dominant hosts, such as Corynebacterium, Bacillus, and Clostridium, along with emerging bacteria like Thermobifida, Saccharomonospora, and Actinomadura, contributed significantly to the enrichment of total ARGs, including tetG, tetO, tetX, and sul2, in chicken and pig manure composts. The coexistence of these genes with mobile genetic elements and a plethora of host bacteria, coupled with their high abundance, renders them particularly high-risk ARGs. On the other hand, the observed decrease in the abundance of total ARGs in sheep and cow manure composts can be attributed to the decline in the population of host bacteria, specifically Atopostipes, Psychrobacter, and Corynebacterium. Collectively, these results provide crucial insights into the management of ARGs risks and offer essential theoretical support for enhancing the safe utilization of organic fertilizer in agriculture.

In vitro assessment of the bacterial stress response and resistance evolution during multidrug-resistant bacterial invasion of the Xenopus tropicalis intestinal tract under typical stresses

The intestinal microbiome might be both a sink and source of resistance genes (RGs). To investigate the impact of environmental stress on the disturbance of exogenous multidrug-resistant bacteria (mARB) within the indigenous microbiome and proliferation of RGs, an intestinal conjugative system was established to simulate the invasion of mARB into the intestinal microbiota in vitro. Oxytetracycline (OTC) and heavy metals (Zn, Cu, Pb), commonly encountered in aquaculture, were selected as typical stresses for investigation. Adenosine 5'-triphosphate (ATP), hydroxyl radical (OH·-) and extracellular polymeric substance (EPS) were measured to investigate their influence on the acceptance of RGs by intestinal bacteria. The results showed that the transfer and diffusion of RGs under typical combined stressors were greater than those under a single stressor. Combined effect of OTC and heavy metals (Zn, Cu) significantly increased the activity and extracellular EPS content of bacteria in the intestinal conjugative system, increasing intI3 and RG abundance. OTC induced a notable inhibitory response in Citrobacter and exerted the proportion of Citrobacter and Carnobacterium in microbiota. The introduction of stressors stimulates the proliferation and dissemination of RGs within the intestinal environment. These results enhance our comprehension of the typical stresses effect on the RGs dispersal in the intestine.

Response of fulvic acid linking to redox characteristics on methane and short-chain fatty acids in anaerobic digestion of chicken manure

Fulvic acids (FAs) is formed during the bioconversion of organic matter (OM) to biogas during anaerobic digestion (AD) and has a complex structure and redox function. However, the evolutionary mechanisms of FAs during AD and its interactions with acid and methane production have not been sufficiently investigated, especially at different stages of AD. Intermittent AD experiments by chicken manure and rice husk showed significant structural changes and reduced aromatization of FAs (e.g., O-H stretch6, 14.10-0%; SR, 0.22-0.60). The electron donating capacity (EDC) [9.76-45.39 μmole-/(g C)] and electron accepting capacity (EAC) [2.55-5.20 μmole-/(g C)] of FAs showed a tendency of decreasing and then increasing, and FAs had a stronger electron transfer capacity (ETC) in the methanogenic stage. Correlation analysis showed that the EDC of FAs was influenced by their own structure (C-O stretch2, C-H bend1, C-H bend4, and N-H bend) and also had an inhibitory effect on propionic production, which further inhibited acetic production. The EAC of FAs was affected by molecular weight and had a promoting effect on methane production. Structural equation modelling identified three possible pathways for AD. The C-O stretch2 structure of FAs alone inhibits the production of propionic. In addition, pH can directly affect the EDC of FAs. This study provides a theoretical basis for the structural and functional evolution of FAs in AD of chicken manure on the mechanism of methane production.

Impacts of ammoniacal odour removal bioagent on air bacterial community

While biotechnologies offer eco-friendly solutions for eliminating air contaminants, there is a scarcity of research examining the impacts of microbial purification of air pollutants on the structure and function of air microbial communities. In this study, we explored a Lactobacillus paracasei B1 (LAB) agent for removing ammoniacal odour. The impacts of LAB on air bacterial community were revealed. by analyzing the air samples before (BT) and after (AT) LAB bioagent treatment. Remarkably, the LAB bioagent significantly reduced the air ammonia concentration by 96.8%. This reduction was associated with a notable decline in bacterial diversity and a significant shift in community composition. The relative abundance of Staphylococcus, a common pathogen, plummeted from 1.91% to 0.03%. Moreover, other potential pathogens decreased by over 87%, signifying the bioagent's impactful role in diminishing health risks. The dominance of OTU-4 (Lactobacillus) highlighted its crucial role not only in competitive interactions but also potentially in shaping the metabolic pathways or community dynamics within the treated air microbial ecosystem. This shift towards deterministic assembly processes post-treatment, as highlighted by the normalized stochasticity ratio (NST), sheds light on the underlying mechanisms dictating the microbial community's response to bioagent interventions. The bioagent-purified air microbial community showed a strong preference for variable selection (88.9%), likely due to the acidity generated by the LAB. In conclusion, our findings emphasized the positive impact of LAB bioagent in enhancing air quality, which associated with the changes in microbial community.

Available sulfur and phosphorus transformation mechanism and functional microorganisms during sheep manure composting on Qinghai-Tibet Plateau under two moisture contents

Understanding the mechanisms of sulfur and phosphorus transformation during composting is important for improving compost fertility. This study aims to investigate the microbial mechanism of available sulfur and phosphorus transformation during sheep manure composting under different moisture contents (45%: M45 and 60%: M60) on the Qinghai-Tibet Plateau using metagenomics technology. The results showed that the final available sulfur and phosphorus contents of M45 were 11% and 13% higher than those of M60, respectively. M45 enhanced sulfur oxidation, sulfate reduction, and thiosulfate disproportionation. These steps were significantly positively correlated with available sulfur, and Pseudomonas, Thermobifida, Luteimonas, Brevibacterium, Planifilum, and Xinfangfangia were the main participants. Available phosphorus was significantly positively correlated with polyphosphate degradation and inorganic P solubilization, and the main participants in these steps were Luteimonas, Brachybacterium, Corynebacterium, Jeotgalicoccus, Microbacterium, Streptomyces, and Pseudoxanthomonas. These findings reveal the microbial mechanisms of available and phosphorus transformation during composting at two moisture contents.

Change of core microorganisms and nitrogen conversion pathways in chicken manure composts by different substrates to reduce nitrogen losses

Due to the rapid development of animal husbandry, the associated environmental problems cannot be ignored, with the management of livestock and poultry manure emerging as the most prominent issue. Composting technology has been widely used in livestock and poultry manure management. A deeper understanding of the nitrogen conversion process during composting offers a theoretical foundation for selecting compost substrates. In this study, the effects of sawdust (CK) and spent mushroom compost (T1) as auxiliary materials on nitrogen as well as microbial structure in the composting process when composted with chicken manure were investigated. At the end of composting, the nitrogen loss of T1 was reduced by 17.18% relative to CK. When used as a compost substrate, spent mushroom compost accelerates the succession of microbial communities within the compost pile and alters the core microbial communities within the microbial community. Bacterial genera capable of cellulose degradation (Fibrobacter, Herbinix) are new core microorganisms that influence the assimilation of nitrate reduction during compost maturation. Using spent mushroom compost as a composting substrate increased the enzyme activity of nitrogen assimilation while decreasing the enzyme activity of the denitrification pathway.

Effects of adding lignocellulose-degrading microbial agents and biochar on nitrogen metabolism and microbial community succession during pig manure composting

This study assessed the influence of the additions of lignocellulose-degrading microbial agents and biochar on nitrogen (N) metabolism and microbial community succession during pig manure composting. Four treatments were established: CK (without additives), M (lignocellulose-degrading microbial agents), BC (biochar), and MBC (lignocellulose-degrading microbial agents and biochar). The results revealed that all treatments with additives decreased N loss compared with CK. In particular, the concentrations of total N and NO3--N were the highest in M, which were 21.87% and 188.67% higher than CK, respectively. Meanwhile, the abundance of denitrifying bacteria Flavobacterium, Enterobacter, and Devosia reduced with additives. The roles of Anseongella (nitrifying bacterium) and Nitrosomonas (ammonia-oxidizing bacterium) in NO3--N transformation were enhanced in M and BC, respectively. N metabolism pathway prediction indicated that lignocellulose-degrading microbial agents addition could enhance N retention effectively mainly by inhibiting denitrification. The addition of biochar enhanced oxidation of NH4+-N to NO2--N and N fixation, as well as inhibited denitrification. These results revealed that the addition of lignocellulose-degrading microbial agents individually was more conducive to improve N retention in pig manure compost.

Exploring the nitrogen fixing strategy of bacterial communities in nitrogen cycling by adding calcium superphosphate at various periods during composting

Chicken manure, as an organic solid waste with a high nitrogen content, generates large amounts of ammonia during composting, which leads to pollution of the surrounding environment, and causes a reduction in the quality of the compost product. Nitrogen is transformed through the nitrogen cycle and bacterial communities are the main contributors to the transformation of the nitrogen cycle. The microbial composition changes dramatically at different stages during composting. Therefore, calcium superphosphate (SSP) was added to compost as a nitrogen-fixing agent to elucidate the strategy and function of the bacterial community involved in the nitrogen cycle. The results showed that the addition of SSP at the initial, high temperature and cooling stages increased the inorganic nitrogen (NH4+-N, NO3--N) content by 51.99 %, 202.72 % and 173.37 % compared to CK, respectively. In addition, nitrogen cycle functional genes (gdh, nifH, pmoA-amoA, hao, nxrA, nirK, napA, nosZ, narG) abundance were determined by real-time qPCR. The nitrogen cycle genetic results showed that SSP addition at high temperature phase resulted in a 62.43 % down-regulation of ammonification genes, while nitrogen fixation and nitrification genes were enhanced. Random forests revealed a shift in the participation strategy of bacterial communities (e.g., Mycobacterium, Izemoplasmatales, Paracoccus, Ruminococcus) within the nitrogen cycle, leading to altered importance rankings despite involvement in different nitrogen cycle pathways. Moreover, Regression analysis and structural equation modelling revealed that SSP addition at high temperature stage stimulated the bacterial community engaged in nitrogen fixation and nitrification, resulting in increased nitrogen accumulation as NO3--N during composting. This paper offers the potential to yield novel scientific insights into the impact of microbially mediated nitrogen transformation processes and reduce gaseous pollution.

Exploration of potential driving mechanisms of Comamonas testosteroni in polycyclic aromatic hydrocarbons degradation and remodelled bacterial community during co-composting

Polycyclic aromatic hydrocarbons (PAHs) are a cluster of highly hazardous organic pollutants that are widespread in ecosystems and threaten human health. Composting has been shown to be an effective strategy for PAHs degredation. Here, we used Comamonas testosteroni as an inoculant in composting and investigated the potential mechanisms of PAHs degradation by co-occurrence network and structural equation modelling analysis. The results showed that more than 60% of PAHs were removed and the bacterial community responded to the negative effects of PAHs by upgrading the network. Inoculation with C. testosteroni altered bacterial community succession, intensified bacterial response to PAHs, improved metabolic activity, and promoted the degradation of PAHs during co-composting. The increased in the positive cohesion index of the community suggested that agents increased the cooperative behaviour between bacteria and led to changes in keystones of the bacterial network. However, the topological values of C. testosteroni in the network were not elevated, which confirmed that C. testosteroni altered communities by affecting other bacterial growth rather than its own colonisation. This study strengthens our comprehension of the potential mechanisms for the degradation of PAHs in inoculated composting.

Effects of adding corn steep liquor on bacterial community composition and carbon and nitrogen transformation during spent mushroom substrate composting

BACKGROUND

Carbon and nitrogen are essential energy and nutrient substances in the composting process. Corn steep liquor (CSL) is rich in soluble carbon and nitrogen nutrients and active substances and is widely used in the biological industry. Nonetheless, limited research has been done on the effect of CSL on composting. This work firstly reveals the effect of adding CSL to bacterial community composition and carbon and nitrogen conversion during composting. This study provides the choice of auxiliary materials for the spent mushroom substrate compost (SMS) and some novel knowledge about the effect of bacterial community on C and N cycling during composting of SMS and CSL. Two treatments were set up in the experiment: 100% spent mushroom substrate (SMS) as CK and SMS + 0.5% CSL (v/v) as CP.

RESULTS

The results showed that the addition of CSL enhanced the initial carbon and nitrogen content of the compost, altered the bacterial community structure, and increased the bacterial diversity and relative abundance, which might be beneficial to the conversion and retention of carbon and nitrogen in the composting process. In this paper, network analysis was used to screen the core bacteria involved in carbon and nitrogen conversion. In the CP network, the core bacteria were divided into two categories, synthesizing and degrading bacteria, and there were more synthesizing bacteria than degrading bacteria, so the degradation and synthesis of organic matter were carried out simultaneously, while only degrading bacteria were found in the CK network. Functional prediction by Faprotax identified 53 groups of functional bacteria, among which 20 (76.68% abundance) and 14 (13.15% abundance) groups of functional bacteria were related to carbon and nitrogen conversion, respectively. Adding CSL stimulated the compensatory effect of core and functional bacteria, enhanced the carbon and nitrogen transformation ability, stimulated the activity of low-abundance bacteria, and reduced the competitive relationship between the bacterial groups. This may be why the addition of CSL accelerated the organic matter degradation and increased carbon and nitrogen preservation.

CONCLUSIONS

These findings indicate that the addition of CSL promoted the cycling and preservation of carbon and nitrogen in the SMS composts, and the addition of CSL to the compost may be an effective way to dispose of agricultural waste.

Combined effects of amoxicillin and copper on nitrogen transformation and the microbial mechanisms during aerobic composting of cow manure

Pollutants in livestock manure have a compound effect during aerobic composting, but research to date has focused more on single factors. This study investigated the effects of adding amoxicillin (AMX), copper (Cu) and both (ACu) on nitrogen transformation and the microbial mechanisms in cow manure aerobic composting with wheat straw. In this study, compared with CK, AMX, Cu, and ACu increased NH₃ cumulative emissions by 32.32%, 41.78% and 8.32%, respectively, due to their inhibition of ammonia oxidation. Coexisting AMX and Cu decreased the absolute abundances of amoA/ nxrA genes and increased the absolute abundances of nirS /nosZ genes, but they had an antagonistic effect on the changes in functional gene abundances. Pseudomonas and Luteimonas were enriched during the thermophilic and cooling periods due to the addition of AMX and ACu, which enhanced denitrification in these two groups. Moreover, adding AMX and/or Cu led to more complex bacterial networks, but the effect of the two pollutants was lower than those of the individual pollutants. These findings provide theoretical and experimental support for controlling typical combined pollution with antibiotics and heavy metals in livestock manure.

The effect of calcium superphosphate addition in different stages on the nitrogen fixation and ammonification during chicken manure composting

Nitrogen losses through ammonia (NH₃) emission were an unavoidable issue during chicken manure composting. Calcium superphosphate can be added to effectively limit the emission of NH₃. The results show that adding calcium superphosphate in the heating, high temperature and cooling stages reduces ammonia emission by 18.48 %, 28.19 % and 0.91 % respectively. Furthermore, adding calcium superphosphate at high temperature stage increased the ammonium nitrogen content (NH₄⁺-N), reducing the conversion of organic nitrogen (HON) to NH₄⁺-N. Network analysis indicated that adding calcium superphosphate during the high temperature stage reduced NH₃-related microorganisms and effectively inhibited ammonification. Moreover, the results of qPCR of the ammonification gene gdh and structural equation model (SEM) verify that adding calcium superphosphate at the high temperature stage reduced ammonification and drove ammonification-related bacterial communities to decrease ammonia emissions. Adding superphosphate at high temperature can effectively increase the nitrogen content and reduce gas pollution during composting.

Effect of calcium peroxide assisted microwave irradiation pretreatment on humus formation and microbial community in straw and dairy manure composting

In this study, the effects of four pretreatment methods on the crystallinity of maize straw were compared, and the CaO₂ assisted microwave pretreatment was selected for straw and dairy manure composting. The humification and microbial community were investigated. Results showed that the pretreatment increased the initial water-soluble carbon, which favored the microbial activity, and the CO₂ release increased by 15.71%. Pretreatment promoted the lignocellulose degradation, with total degradation ratio of 37.06%. The final humic acid content was 11.39 g/kg higher than the control. Spearman correlation analysis indicated that polyphenols and amino acids were significantly related to humus formation. In addition, pretreatment rendered the Firmicutes the most dominant phylum, and increased the metabolic intensity of reducing sugar metabolism, aromatic amino acid biosynthesis and carbon fixation pathways. Redundancy analysis revealed that the dominant genus of Firmicutes was significantly positively correlated with humus, while that of Actinobacteriota was correlated with CO₂ release.

Optimization of composting methods for efficient use of cassava waste, using microbial degradation

With the recent revolution in the green economy, agricultural solid waste resource utilization has become an important project. A small-scale laboratory orthogonal experiment was set up to investigate the effects of C/N ratio, initial moisture content and fill ratio (v_{cassava residue}: v_gravel) on the maturity of cassava residue compost by adding Bacillus subtilis and Azotobacter chroococcum. The highest temperature in the thermophilic phase of the low C/N ratio treatment is significantly lower than the medium and high C/N ratios. The C/N ratio and moisture content have a significant impact on the results of cassava residue composting, while the filling ratio only has a significant impact on the pH value and phosphorus content. Based on comprehensive analysis, the recommended process parameters for pure cassava residue composting are a C/N ratio of 25, an initial moisture content of 60%, and a filling ratio of 5. Under these conditions, the high-temperature conditions can be reached and maintained quickly, the organic matter has been degraded by 36.1%, the pH value has dropped to 7.36, the E4/E6 ratio is 1.61, the conductivity value has dropped to 2.52 mS/cm, and the final germination index increased to 88%. The thermogravimetry, scanning electron microscope, and energy spectrum analysis also showed that the cassava residue was effectively biodegraded. Cassava residue composting with this process parameter has great reference significance for the actual production and application of agriculture.

Di-n-butyl phthalate stress induces changes in the core bacterial community associated with nitrogen conversion during agricultural waste composting

Nitrogen (N) loss during composting reduces the quality of compost products and causes secondary environmental pollution. Phthalate esters (PAEs) are common pollutants in agricultural wastes. However, little information is currently available on how PAEs affect N conversion during agricultural waste composting. This research systematically analyzed the impact of di-n-butyl phthalate (DBP) pollution on the N conversion and its related microbial community during composting. Our results indicated that DBP stress results in a shorter thermophilic phase, and then slower compost maturation during composting. Notably, DBP stress inhibited the conversion of ammonia to nitrate, but increased the release of NH₃ and N₂O leading to an increased N loss and an elevated greenhouse effect. Furthermore, DBP exposure led to a reduction of bacteria related to NH₄⁺ and NO₃^- conversion and altered the network complexity of the bacterial community involved in N conversion. It also reduced the abundance of a major nitrification gene (amoA) (P < 0.01) and increased the abundance of denitrification genes (nirK and norB) (P < 0.05). Moreover, DBP affected the overall microbial community composition at all tested concentrations. These findings provide theoretical and methodological basis for improving the quality of PAE-contaminated agricultural waste compost products and reducing secondary environmental pollution.

Application of spray-dried erythromycin fermentation residue as a soil amendment: antibiotic resistance genes, nitrogen cycling, and microbial community structure

Erythromycin fermentation residue (EFR) after spray drying could be reused as a soil amendment. However, the effects of spray-dried EFR on antibiotic resistance genes (ARGs), nitrogen cycling, and microbial community structure in soil are rarely reported. In this study, a pot experiment was conducted by adding spray-dried EFR to soil. For the application of 1.0% spray-dried EFR, the residual erythromycin (ERY) could be rapidly removed with the half-life of 22.2 d; the total relative abundance of ARGs increased at first, but decreased to the initial level of the control group in the end; genes related to ammonium assimilation (glnA, gltB, gltD), ammonification (gdhA, gudB, cynT, cynS, ncd2), denitrification (narI, narG, narH), assimilatory nitrate reduction (nirA, nasA), and dissimilatory nitrate reduction (nirD) were enriched; soil microbial community structure presented temporary variation. Network analysis showed significant negative correlations between ARGs and nitrogen cycling genes. The addition of 6.0% spray-dried EFR resulted in the amplification of ARGs and inhibition of nitrogen cycling. This work provides new insights into the effects of spray-dried EFR on ARGs, nitrogen cycling, and microbial community structure within the fertilized soil.

Exploring the internal driving mechanism underlying bacterial community-induced organic component conversion and humus formation during rice straw composting with tricarboxylic acid cycle regulator addition

The aim of this study was to investigate the effect of tricarboxylic acid (TCA) cycle regulators on CO₂ emissions, the conversion of organic components and humus formation during composting. The addition of adenosine triphosphate (ATP) and nicotinamide adenine dinucleotide (NADH) reduced CO₂ emissions during rice straw composting. According to co-occurrence networks results, ATP enhanced the connectivity and complexity of the network; NADH enhanced microbial interactions. The different kind of TCA cycle regulators had different effect on humus formation pathway. The structural equation model showed that ATP might promote lignin transformation into humus via the sugar-amine condensation pathway and lignin-protein pathway while NADH may promote cellulose degradation into soluble sugar and organic matter, which are transformed into humus. This work will provide valuable guidance for exploring the mechanism of TCA cycle regulators in promoting organic carbon fixation and reducing inorganic carbon mineralization.

Impacts of composting duration on physicochemical properties and microbial communities during short-term composting for the substrate for oyster mushrooms

A short-term composting process to prepare substrate is an effective way to cultivate oyster mushrooms (Pleurotus spp.), which can increase the yield of mushrooms and lower the rate of contamination in non-industrialized cultivation. Moreover, it is different from the traditional composting processes for fertilizers and lacks systematic study, such as microbial succession and compost quality. In this study, a series of different tests of composting duration (0, 2, 4 and 5 d) were performed. A composting duration of 4-5 d over 58 °C was suitable for mushroom cultivation based on the biological efficiency (BE) range of 69.76-73.41 % and the contamination rate of 0 %. The content of total carbon (TC) continuously decreased during composting, while the content of total nitrogen (TN) reacted in an opposite matter. The final TN and C/N ratios were 1.89 % and 28/1, respectively, which fell well within the optimal range of nutritional requirements for oyster mushroom cultivation. The composting bacteria were more diverse than the fungal species. Caldibacillus, Thermobispora, Thermopolyspora, Thermobacillus and Ureibacillus were the predominant bacterial genera during the thermophilic stage. Co-occurrence patterns of microbial communities and physicochemical properties were performed using a network analysis, which indicated that bacteria can play more efficient roles than fungi in the degradation of organic matter. The structural equation model showed that composting duration significantly affected bacterial diversity, lignocellulose degradation rates, and BE. The correlations between bioinformatics parameters with composting characters and agronomic traits were determined by the Mantel test and showed that the induction of bacterial diversity over time rapidly activated carbon metabolism during short-term composting. This study provides a new idea of agro-waste composting for mushroom cultivation.

Characteristics of oxytetracycline stress-sensitive microbe-dissolved organic matter component interactions during composting

Dissolved organic matter (DOM) has important impacts on the transportation of antibiotics through chemical and biological processes in composting. The interaction between DOM and antibiotics is reciprocal. The interaction between DOM ligands and antibiotics could be characterized based on a technique combining parallel factor analysis (PARAFAC) and microbial community structure analysis. However, PARAFAC cannot reveal the dynamic changes in each DOM peak in one PARAFAC component under antibiotic stress. In this study, two-dimensional correlation spectroscopy (2DCOS) combined with PARAFAC and bacterial community diversity analyses were employed to reveal the effects of oxytetracycline (OTC) stress and the key microorganisms on the transformation of different fluorescent peaks from DOM PARAFAC components during chicken manure composting. The results showed that OTC inhibits the transformation between DOM PARAFAC components by inhibiting the core microbial activities involved in the transformation of DOM components. Protein-like components (C1 and C2) were more sensitive to OTC residue, and components with a high humification degree promoted the degradation of OTC. The interaction between special DOM PARAFAC components and certain bacteria affects the degradation of OTC. The DOM PARAFAC components A2(C1), B1(C2), B2(C2) and Z1(C4) enhanced OTC degradation by stimulating the genera Pseudomonas, Glycomyces and Hyphomicrobium. With these promising results, the true effect of DOM PARAFAC components on the degradation of OTC can be revealed, which is helpful for addressing antibiotic contamination to improve the bioavailability of compost products.

Soil metagenomic analysis on changes of functional genes and microorganisms involved in nitrogen-cycle processes of acidified tea soils

Nitrogen (N) is the first essential nutrient for tea growth. However, the effect of soil acidification on soil N cycle and N forms in tea plantation are unclear. In this study, the nitrogen contents, soil enzyme activity and N mineralization rate in acidified soil of tea plantation were measured. Moreover, the effects of soil acidification on N cycling functional genes and functional microorganisms were explored by soil metagenomics. The results showed that the NH₄ ⁺-N, available N and net N mineralization rate in the acidified tea soil decreased significantly, while the NO₃ ^--N content increased significantly. The activities of sucrase, protease, catalase and polyphenol oxidase in the acidified tea soil decreased significantly. The abundance of genes related to ammonification, dissimilatory N reduction, nitrification and denitrification pathway in the acidified tea soil increased significantly, but the abundance of functional genes related to glutamate synthesis and assimilatory N reduction pathway were opposite. In addition, the abundance of Proteobacteria, Actinobacteria, Chloroflexi, Nitrospirae, Actinomadura, Nitrospira etc. microorganisms related to nitrification, denitrification and pathogenic effect increased significantly in the acidified tea soil. The correlation results showed that soil pH and N forms were correlated with soil enzyme activity, N cycling function genes and microbial changes. In conclusion, soil acidification results in significant changes in enzyme activity, gene abundance and microorganism involved in various N cycle processes in acidified tea soil, which leads to imbalance of soil N form ratio and is not conducive to N transformation and absorption of tea trees.

Straw waste promotes microbial functional diversity and lignocellulose degradation during the aerobic process of pig manure in an ectopic fermentation system via metagenomic analysis

This study compares the physicochemical properties, lignocellulose degradation, microbial community composition, and carbohydrate-active enzymes (CAZymes) in ectopic fermentation systems (EFS) of pig manure mixed with either conventional padding (C) or straw waste (A). The degradation rates of cellulose, hemicellulose, and lignin were found to be significantly higher in A (27.72%, 22.72%, and 18.80%, respectively) than in C (21.05%, 16.17%, and 11.69%, respectively) owing to the activities of lignocellulolytic enzymes. Metagenomics revealed that straw addition had a stronger effect on the bacterial community succession than fungi. The abundances of Sphingobacterium, Pseudomonas, and CAZymes were higher in A than in C, as well as the auxiliary activity enzymes, which are crucial for lignocellulose degradation. Redundancy analysis indicates a positive correlation between lignocellulose degradation and Sphingobacterium, Pseudomonas, Bacillus, and Actinobacteria contents. A structural equation model was applied to further verify that the increased microbial functional diversity was the primary driver of lignocellulosic degradation, which could be effectively regulated by the enhanced temperature with straw addition. Replacing traditional padding with straw can thus accelerate lignocellulosic degradation, promote microbial functional diversity, and improve the EFS efficiency.

Differentiated strategies of animal-derived and plant-derived biochar to reduce nitrogen loss during paper mill sludge composting

This work aimed to reveal the differences of nitrogen (N) transformation between animal-derived and plant-derived biochar during paper mill sludge composting. Three treatments were established, including CK (no biochar), ABC (animal-derived biochar), and PBC (plant-derived biochar). Results showed that N loss was reduced by 24.43% and 35.50% in ABC and PBC, respectively, compared with CK. Moreover, the contents of acid-insoluble N (AIN) in ABC and bioavailable organic N (BON) in PBC were 6.180 g/kg and 9.269 g/kg higher than in CK (2.602 g/kg and 8.988 g/kg). The protease activity and bacterial abundance associated with the generation of humic N-containing precursors increased in ABC. Low urease activity and a more complex bacterial N-cycling network were found in PBC. Structural equation model confirmed that AIN formation and BON retention were the dominant strategies for animal-derived and plant-derived biochar, respectively. The findings provided multiple pathways to produce N-enriched compost products.

Effects of composting on the fate of doxycycline, microbial community, and antibiotic resistance genes in swine manure and broiler manure

Aerobic composting is an economical and effective technology that is widely used to treat animal manure. To study the fate of doxycycline (DOX), the microbial community, and antibiotic resistance genes (ARGs) during composting, aerobic composting of broiler manure and swine manure was carried out under natural environmental conditions. Aerobic composting effectively removed DOX (with a removal rate > 97%) and most ARGs from animal manure. The microbial diversity and the numbers of ARGs were higher in composted swine manure compared with composted broiler manure. The microbial community structure changed during composting, and the dominant phyla of broiler manure and swine manure changed from Firmicutes to Bacteroidetes and Proteobacteria, respectively. DOX changed the structure and relative abundance of the microbial community during composting, and the relative abundance of multidrug resistance genes and mobile genetic elements (MGEs) increased, which might lead to the risk of transmission of resistance in the environment. The C / N ratio, DOX concentration, Firmicutes, intl1, and intl2 were the key factors driving the change in ARGs during composting. These results help to reveal the effects of DOX on microbial communities, ARGs, and MGEs during composting and clarify the possible ways to reduce the risk of resistance gene transmission in the environment.

Community structure and co-occurrence network analysis of bacteria and fungi in wheat fields vs fruit orchards

Soil microorganisms play a vital role in biogeochemical processes and nutrient turnover in agricultural ecosystems. However, the information on how the structure and co-occurrence patterns of microbial communities response to the change of planting methods is still limited. In this study, a total of 34 soil samples were collected from 17 different fields of 2 planting types (wheat and orchards) along the Taige Canal in Yangtze River Delta. The structure of bacterial and fungal communities in soil were determined by 16S rRNA gene and ITS gene, respectively. The dominated bacteria were Proteobacteria, Acidobacteriota, Actinobacteriota, Chloroflexi, Bacteroidota, and Firmicutes. The relative abundances of Actinobacteriota and Firmicutes were higher in the orchards, while Chloroflexi and Nitrospirota were more abundant in wheat fields. Ascomycota, Mortierellomycota, and Basidiomycota were the predominant fungus in both soil types. Diversity of bacterial and fungal communities were greater in the wheat fields than in orchards. Statistical analyses showed that pH was the main factor shaping the community structure, and parameters of water content (WC), total organic carbon (TOC) and total nitrogen (TN) had great influences on community structure. Moreover, high co-occurrence patterns of bacterial and fungal were confirmed in both wheat fields and orchards. Network analyses showed that both wheat fields and orchards occurred modular structure, including nodes of Acidobacteriota, Chloroflexi, Gemmatimonadota, Nitrospirota and Ascomycota. In summary, our work showed the co-occurrence network and the convergence/divergence of microbial community structure in wheat fields and orchards, giving a comprehensive understanding of the microbe-microbe interaction during planting methods' changes.

Effects of multiple antibiotics residues in broiler manure on composting process

At present, the effect of multiple antibiotics on aerobic composting process and its mechanism are not clear. So in this study, broiler manure containing different doses of Doxycycline (DOX) and Gatifloxacin (GAT) were used as raw materials and mixed with rice hull for aerobic composting, and the effects of the combination of multiple antibiotics on the process parameters of broiler manure composting and the succession of bacterial and fungal community structures were systematically analyzed. Our results showed that at the initial period of composting, the combination of multiple antibiotics led to a delayed temperature and pH increase (T1: 57.0 °C, T2: 48.3 °C, T3: 45.5 °C on Day 3 for temperature and T1: 7.44, T2: 7.1, T3: 6.88 on Day 5 for pH), and a slow total nitrogen decrease (T1: 1.56%, T2: 1.82%, T3: 1.74% on Day 5). Although these effects decreased gradually with the degradation of antibiotics, the relative abundance of Actinobacteriota (T1: 13.29%, T2: 10.57%, T3: 8.99%) and Bacteroidota (T1:27.52%, T2:40.03%, T3:39.81%)) were still influenced by multiple antibiotic residuals until the end of composting period. Higher levels of antibiotics had more lasting effects on the bacterial community (T3 > T2). However, the combination of these two antibiotics did not significantly promote or inhibit the succession of the fungal community structure. The heatmaps showed that composting stage had a greater effect on the microbial community structures than antibiotics. The results provided a theoretical reference for composting broiler manure containing DOX and GAT.

Impact of ciprofloxacin and copper combined pollution on activated sludge: Abundant-rare taxa and antibiotic resistance genes

This study aimed to explore the impacts of ciprofloxacin (CIP, 0.05-40 mg/L) and copper (3 mg/L) combined pollution on nitrification, microbial community and antibiotic resistance genes (ARGs) in activated sludge system during stress- and post-effect periods. Higher CIP concentration inhibited nitrification and an average of 50% total nitrogen removal occurred under 40 mg/L of CIP pressure. The stress- and post-effects on bacterial diversity and structure were obviously distinct. Abundant genera were more sensitive to combined pollution than rare genera based on full-scale classification and conditionally rare or abundant taxa were keystone taxa in their interactions. Ammonia oxidation genes were inhibited under high CIP level, but some aerobic denitrifying bacteria (Thauera, Comamonas and Azoarcus) and key genes increased. 96 ARG subtypes were detected with complex positive relationships and their potential hosts (abundant-rare-functional genera) changed in two periods. This study highlights the different stress- and post-effects of combined pollution on activated sludge.

Intraspecific and interspecific quorum sensing of bacterial community affects the fate of antibiotic resistance genes during chicken manure composting under penicillin G stress

In this study, the effects of penicillin G (PENG) on the fate of bacterial communities and β-lactamase antibiotic resistance genes (ARGs) during chicken manure composting were assessed, to illustrate the roles of PENG in ARGs behavior. The results showed that the total absolute abundances of 9 ARGs and 4 mobile genetic elements (MGEs) was significantly increased by PENG (P < 0.05). Dozens of potential hosts for ARGs were predominantly affiliated with Firmicutes, Proteobacteria, and Actinobacteria. Meanwhile, the higher concentration of PENG significantly increased the abundance of luxI and luxS in quorum sensing (QS) (P < 0.05), which enhanced the frequency of inter/intraspecific gene "communication." Redundancy analysis and structural equation modeling further revealed that QS had a strong regulatory role in horizontal gene transfer of ARGs mediated via MGEs. These results provide new insight into the mechanism of ARGs propagation in aerobic composting modified by PENG.

Plant-scale hyperthermophilic composting of sewage sludge shifts bacterial community and promotes the removal of organic pollutants

The dissipation of toxic organic pollutants during plant-scale hyperthermophilic composting and the influence of microbial community remain unclear. The results of plant-scale hyperthermophilic composting of municipal sludge with green waste showed that the residual concentrations of polyaromatic hydrocarbons, phthalates, polybrominated diphenyl ethers were <5 mg/kg and decreased over time, with the removal percentages from 12.1% to 51.2% during seven days of composting. High-throughput sequencingreveals that hyperthermophilic composting significantly reduced the diversity (e.g., observed species, chao1 and Shannon index) of bacterial community, shifting their structure and functions. The relative abundances of dominant phyla Proteobacteria and Firmicutes declined significantly, while those of extremophilic and heat-resisting phyla Deinococcus-Thermus and Chloroflexi increased dramatically. Some genera capable of degrading organic pollutants presented stably in sludge composts. Moreover, hyperthermophilic composting enriched the bacterial functions related to degradation and metabolism of cellulose and xenobiotics pollutants, which promoted the dissipation of organic pollutants and humification.

Process optimization by combining in-vessel composting and vermicomposting of vegetable waste

The process parameters of in-vessel rotary drum composting (RDC) with vermicomposting (VC) were investigated for the conversion of vegetable waste into vermicompost. After 7-day initial thermophilic exposure (maximal 51.5 °C in 24 h), the partially degraded RDC waste was divided into R1 (no vermiculture), R2, R3, and R4 (with Eudrilus eugeniae; Eisenia fetida; and Perionyx excavates monocultures, respectively). R3 derived vermicompost displayed maximum optimal process parameters and desirable compost qualities. Against the constant 2.2% nitrogen content of R1, an increase from 1.4 to 4.15% was seen in R3, with a 52.5% reduction in total organic carbon (TOC). A clear testimony to the enhanced nutritional content and fitness of the novel combination of RDC thermophilic biodegradation and E. fetida based vermicomposting. In an environmentally compatible mode, the faster organic deconstruction in 27 days could substantially alter organic waste treatment in the immediate future.

Driving factors of nitrogen conversion during chicken manure aerobic composting under penicillin G residue: Quorum sensing and its signaling molecules

This study explored effects of different concentrations of penicillin G on nitrogen conversion, bacterial community composition, and quorum sensing during chicken manure aerobic composting. After composting, adding penicillin G down-regulated the abundance of 71 genera and up-regulated the abundance of 103 genera. These bacterial genera were mainly Firmicutes and Proteobacteria. 16S rRNA gene sequencing was employed for function prediction, and the results showed that the addition of penicillin G increased nitrification, reduced denitrification. The autoinducer-1 (AI-1), autoinducer-3 (AI-3) and Phr signal molecules further participated in the nitrogen cycle by regulating the population behavior among multiple bacterial genera. In addition, SEM analysis showed that the quorum sensing system negatively regulated the abundance of genus related to the nitrogen conversion during chicken manure aerobic composting. This is a new theoretical analysis of the research on the treatment of hazardous materials.

Response of bacterial community to iron oxide nanoparticles during agricultural waste composting and driving factors analysis

The succession of bacterial communities and their function, and the core microorganisms for water soluble organic carbon (WSC) and organic matter (OM) changes during agricultural waste composting with addition of iron oxide nanomaterials (FeONPs, Fe₂O₃ NPs and Fe₃O₄ NPs) were investigated. Moreover, driving factors for bacterial composition and metabolism were analyzed. Results showed that FeONPs treatments increased the relative abundance of thermophilic microorganisms for OM degradation. Most of the core genera were responsible for decomposition of OM and synthesis of WSC. Additionally, FeONPs promoted the metabolism of amino acids. The most significant factors for dominant genera in control, Fe₂O₃ NPs and Fe₃O₄ NPs group were moisture (62.1%), moisture (62.0%) and OM (58.2%), respectively. For metabolism, the most significant factors in control, Fe₂O₃ NPs and Fe₃O₄ NPs group were temperature (57.2%), NO₃^--N (60.5%), NO₃^--N (62.6%), respectively. The relationships between compost properties, bacterial community and metabolism were changed by FeONPs.

Activities of functional enzymes involved in C, N, and P conversion and their stoichiometry during agricultural waste composting with biochar and biogas residue amendments

This experiment was carried out to explore the effects of biochar, biogas residue and their combination amendment on enzyme activities and their stoichiometry during agricultural waste composting. A comprehensive analysis of the variation in, and stoichiometric correlations between, β-glucosidase (BG), N-acetylglucosaminidase (NAG), leucine aminopeptidase (LAP), and alkaline phosphatase (AKP) were determined. The results showed that biochar, biogas residue, and their combined addition significantly increased those enzyme activities. The potential C:P and N:P acquisition activities represented by ln(BG): ln(AKP) and ln(LAP + NAG): ln(AKP), were significantly decreased with biogas residue addition. BG, NAG and LAP were significantly negatively correlated with temperature, organic matter and water-soluble carbon. Redundancy analysis also showed that moisture and water-soluble carbon were significantly related to the variations of enzyme activities. Biochar and biogas residue changed the characteristics of the composting substrate, thus affecting the activity and stoichiometry of functional enzymes involved in C, N and P cycling.

Nitrate shifted microenvironment: Driven aromatic-ring cleavage microbes and aromatic compounds precursor biodegradation during sludge composting

The aim of this study was to clarify the aromatic cleavage pathways and microbes involved in the adverse effect of nitrate on aromatic compounds humic substances during sludge composting. Results showed that the functional microbes involved in aromatic compounds humic substances precursors (catechol, tyrosine, tryptophan and phenylalanine) cleavage pathways significantly enriched after nitrate addition. Linear regression analysis showed that aromatic-ring cleavage functional microbes exhibited significant negative correlation with aromatic humic substances (p < 0.05). Furthermore, network analysis indicated that most of microbial communities prefer cooperative with aromatic-ring cleavage functional microbes. Structural equation model further revealed that composting microenvironment drove aromatic-ring cleavage functional microbes activities, resulting in the biodegradation of complex aromatic compounds. This study parsed the effect of a negative factor on aromatic compounds humic substances from an opposing perspective. Properly controlling nitrate concentration and aromatic-ring cleavage functional microbes involved in precursors cleavage was suggested to the practice of composting.

Response of microbial communities based on full-scale classification and antibiotic resistance genes to azithromycin and copper combined pollution in activated sludge nitrification laboratory mesocosms at low temperature

This study aimed to investigate the short-term response of abundant-rare genera and antibiotic resistance genes (ARGs) to azithromycin (AZM, 0.05-40 mg/L) and copper (1 mg/L) combined pollution in activated sludge nitrification system at low temperature. Nitrification was as expected inhibited in stress- and post-effects periods under AZM concentration higher than 5 mg/L. Abundant and rare taxa presented dissimilar responses based on full-scale classification. Conditionally rare or abundant taxa (CRAT) were keystone taxa. Relative abundance of ammonia-oxidizing archaea increased, and three aerobic denitrifying bacteria (Brevundimonas, Comamonas and Trichococcus) were enriched (from 9.83% to 68.91% in total). Ammonia nitrogen assimilating into Org-N and denitrification may be nitrogen pathways based on predict analysis. 29 ARGs were found with more co-occurrence patterns and high concentration of AZM (greater than 5 mg/L) caused their proliferation. Importantly, expect for some abundant taxa, rare taxa, potential pathogens and nitrogen-removal functional genera were the main potential hosts of ARGs.

Bacterial Community Structure and Metabolic Function Succession During the Composting of Distilled Grain Waste

Distilled grain waste (DGW) can be converted to organic fertilizer via aerobic composting process without inoculating exogenous microorganisms. To illustrate the material conversion mechanism, this study investigated the dynamic changes of bacterial community structure and metabolic function involved in DGW composting. Results showed that a significant increase in microbial community alpha diversity was observed during DGW composting. Moreover, unique community structures occurred at each composting stage. The dominant phyla were Firmicutes, Proteobacteria, Actinobacteriota, Bacteroidota, Myxococcota, and Chloroflexi, whose abundance varied according to different composting stages. Keystone microbes can be selected as biomarkers for each stage, and Microbispora, Chryseolinea, Steroidobacter, Truepera, and Luteimonas indicating compost maturity. Co-occurrence network analysis revealed a significant relationship between keystone microbes and environmental factors. The carbohydrate and amino acid metabolism were confirmed as the primary metabolic pathways by metabolic function profiles. Furthermore, nitrogen metabolism pathway analysis indicated that denitrification and NH₃ volatilization induced higher nitrogen loss during DGW composting. This study can provide new understanding of the microbiota for organic matter and nitrogen conversion in the composting process of DGW.

Links between microbial compositions and metabolites during aerobic composting under amoxicillin stress was evaluated by 16S rRNA sequencing and gas chromatography-mass spectrometry: Benefit for the plant growth

The purpose of this study was to identify the relationship between core bacteria and metabolites during aerobic composting and analyze the effects of metabolites on plant growth. The results revealed that amoxicillin might affect the generation and transformation of metabolites by reconstructs the bacterial communities. The peak area ratios (PAR) of esters and fatty acids (FAs) were increased, while sterols decreased during composting. Furthermore, the correlation analysis showed that the production of FAs, esters and sterols is strongly correlated with Oceanobacillus, Corynebacterium, Psychrobacter, Xanthomonadaceae, Pusillimonas and Gracilibacillus. Moreover, 36 key metabolites were screened out, the PAR of the propanoic acid ethyl ester and oleic acid that benefit plant growth were increased in amoxicillin groups. However, the PAR of environmental pollutants, such as n-hexadecanoic acid and 3β, 5β-Cholestan-3-ol is the opposite. Therefore, composting can eliminate the environmental risks caused by antibiotic residues in feces and promote plant growth.

Anaerobic digestion of chicken manure: Sequences of chemical structures in dissolved organic matter and its effect on acetic acid production

The use of chicken manure (CM) leads to serious environmental pollution due to the existence of bacteria and insect pests. Anaerobic digestion (AD) is one of the important technologies of CM treatment. However, methane production is limited by the accumulation of short-chain fatty acids (SCFAs) from AD. Therefore, the study explored the possible formation mechanism of acetic acid by understanding the effect of sequences of chemical structure variation in DOM on acetic acid production. The chemical structures of DOM were observed. The tyrosine-like substances (C1, 53.53-29.99%) and humic-like substances (C3, 18.38-5.96%) showed a tendency to decrease. Tryptophan-like substances (C2, 28.09-64.04%) showed the increasing trend. The results indicated that C2 was unwilling to biodegrade. In DOM, the order of biodegradability was C2< C1< C3. AD resulted in the enrichment of N-H in-plane (0-22.75%) and COO- stretch (7.53-18.57%) and the loss of O-H stretch (19.39-13.72%), C-H stretch (4.56%-0), CC stretch (12.04-9.61%) and C-O stretch (10.02-5.03%). Two-dimensional correlation spectroscopy is applied to investigate the sequences of chemical structures in DOM, the order is as follows: CC stretch > COO- stretch > N-H in-plane > C-O stretch. The result confirmed that protein was rapidly decomposed and utilized, which would result in the increase of microorganism metabolism and hydrolysis rate, polysaccharide was hydrolyzed to form phenol and carboxylic acid. Four possible pathways were identified in AD by the structural equation model. C1and hydroxyl can promote propionic and butyric acid formation by the pathway of valeric or iso-butyric acid production and further effected acetic acid production. This study proposed the possible formative mechanisms of acetic acid according to sequences of chemical structures variation in DOM during AD, which can provide the theoretical basis for directional regulating the conversion of different chemical structures of DOM into acetic acid in AD.

Identifying driving factors of humic acid formation during rice straw composting based on Fenton pretreatment with bacterial inoculation

The aims of this study were to identify the driving factors of humic acid (HA) during rice straw composting based on Fenton pretreatment with bacterial inoculation. Rice straw was pretreated by Fenton reactions and then inoculated during composting, which was set up CK (control), FeW (Fenton pretreatment) and FeWI (Fenton pretreatment + functional bacterial agents). Results indicated that Fenton pretreatment and inoculation of functional bacteria increased the concentration of HA components, which was due to that bacterial composition was changed and bacterial diversity was decreased. Moreover, Fenton pretreatment and inoculation of functional bacteria increased the bacterial amounts of shikimic acid metabolism genes and the correlation between HA components and shikimic acid metabolism genes. Therefore, the functional bacteria were core driving factors, and NH₄^--N, pH, cellulose and bacterial diversity as key environmental factors to promote the formation of HA components.

Biochar addition reduces nitrogen loss and accelerates composting process by affecting the core microbial community during distilled grain waste composting

This study evaluated the impact of biochar addition on nitrogen (N) loss and the process period during distilled grain waste (DGW) composting. Results from the five treatments (0, 5, 10, 15, and 20% biochar addition) indicated that 10% biochar addition (DB10) was optimal, resulting in the lowest N loss, 25.69% vs. 40.01% in the control treatment. Moreover, the DGW composting period was shortened by approximately 14 days by biochar addition. The composition of the microbial community was not significantly altered with biochar addition in each phase, however, it did accelerate the microbial succession during DGW composting. N metabolism pathway prediction revealed that biochar addition enhanced nitrification and inhibited denitrification, and the latter phenomenon was the main reason for reducing N loss during DGW composting. Based on the above results, a potential mechanism model for biochar addition to reduce N loss during the DGW composting process was established.

Role of Bacillus inoculation in rice straw composting and bacterial community stability after inoculation: Unite resistance or individual collapse

Bacillus is the classic inoculant in rice straw composting. However, there has been no in-depth study of the mechanism promoting the degradation of lignocellulose and the change of indigenous bacterial communities after Bacillus inoculation. Moreover, the stability of bacterial communities is a significant challenge in achieving the efficacy of inoculation. In this study, the ecological succession and yield-resource acquisition-stress tolerance (Y-A-S) framework were combined with Redundancy analysis (RDA) and changes in relative abundance, Bacillus was found to be a pioneer bacterium that adopts a resource acquisition-stress tolerance strategy. The structural equation model (SEM) revealed that in addition to exerting a degradation effect, Bacillus inoculation could also indirectly affect lignocellulose degradation by changing the bacterial community. Random forest model and network analysis indicated a change in bacterial communities after inoculation, and bacteria with more complex relationships and weaker decomposition ability were key to the stability of bacterial communities.

Continuous insulation strategy of organic waste composting in cold region: Based on cold-adapted consortium

Compost is a self-heating process for organic waste. Microbes are the main executors in composting process. However, due to low temperature in winter and low efficiency of composting, a lot of heat is lost in composting. In this study, taking-out and feed-batch composting method (TFC) can supplement nutrition and improve composting microenvironment. Compared with NC, the amount of carbohydrates, protein and fat decomposed by TFC increase by 56.8%, 237% and 122%, respectively, in the composting start-up period (0-100 h). Structure and function of microbial community have changed due to stimulation of cold-adapted consortium. In addition, this study shows that core bacteria stimulate cooperation among different bacteria in the organic components metabolism networks. Finally, based on the important role of cold-adapted consortium, the sustainable heating strategy of composting system is put forward, which converts organic wastes into released heat for daily heating and hot water preparation, leading role of cold-adapted consortium.

A review of Canadian and international food safety systems: Issues and recommendations for the future

In January 2019, the Safe Food for Canadians Act/Safe Food for Canadians regulations (heretofore identified as SFCR) came into force across Canada and brought a more streamlined process to food safety practice in Canada. Food trade and production processes have evolved rapidly in recent decades, as Canada imports and exports food products; therefore it is critically important to remain aware of the latest advances responding to a range of challenges and opportunities in the food safety value chain. Looking through the optics of the recent SFCR framework, this paper places the spotlight on leading domestic and international research and practices to help strengthen food safety policies of the future. By shedding some light on new research, we also draw attention to international developments that are noteworthy, and place those in context as to how new Canadian food safety policy and regulation can be further advanced. The paper will benchmark Canada through a review study of food safety best practices by juxtaposing (i) stated aspirations with, (ii) actual performance in leading Organization for Economic Cooperation and Development (OECD) jurisdictions.

Manganese dioxide driven the carbon and nitrogen transformation by activating the complementary effects of core bacteria in composting

This study revealed core bacterial metabolic mechanisms involved in carbon (C) and nitrogen (N) in composting with adding MnO₂. Two tests (control group (CK), adding MnO₂ (M)) were performed. The results indicated that the MnO₂ accelerated the transformation of carbon and nitrogen in composting. Core bacteria involved in the C and N conversion were identified, the complementarity effects of core bacteria were stimulated in M composting. Additionally, the influence of core bacteria on the C and N conversion could be divided into two pathways in M composting. One was that core bacteria promoted C and N conversion by accelerating the flow of amino acids into the tricarboxylic acid cycle. Another was that the complementarity effects of core bacteria increased the overall bacterial diversity, which contributed to C and N conversion. These findings showed that the addition of MnO₂ to composting was a promising application to treat agricultural organic waste.

The key bacteria as the "Activator" promotes the rapid degradation of organic compounds during the start-up of low-temperature compost

During composting of chicken manure, the degradation of organic compounds is a key factor affecting the fate of chicken manure in the low temperature environment. Here, we studied the changes of main organic compounds, including carbohydrates, proteins and lipids and the role of key bacteria in composted at 10 °C. The degradation rates of total sugar and protein in inoculation group were 41.11% and 47.63% respectively, which were related to the activities of carbohydrate related enzymes. The key bacteria from composting have better degradation of organic compounds capacities than others, and improve the enzyme activity. Cluster heatmap verified that the microbial community and enzyme activity were the primary driving factors of organic compounds degradation. Thus, the co-regulation of key microbial and enzyme activity made it possible to promote degradation of organic compounds drastically by microbial metabolism. These above findings are beneficial to improving the utilization of livestock manure in cold areas.

The action difference of metabolic regulators on carbon conversion during different agricultural organic wastes composting

The purpose of this study is to explore the action characteristics of metabolic regulators like adenosine tri-phosphate (ATP) and malonic acid (MA) during rice straw (RS) and fruit and vegetable waste (FVW) composting. Results showed that due to the easy degradation difference, ATP and MA reduced CO₂ emission in RS and FVW, respectively. Moreover, adding ATP and MA increased humic acids (HA) content in FVW more significantly (p < 0.05), especially for ATP. However, adding MA accelerated organic matter degradation during RS composting, which was basically consistent with CO₂ emission, but it was not effective in promoting HA formation. Furthermore, the microbial community was reshaped by adding ATP and MA. Eventually, structural equation model further confirmed that adding metabolic regulators enhanced the biotic and abiotic pathways of HA formation, and the promotion effect of adding ATP was more obvious. The study has great practical significance for the dispose of agricultural waste.

Evaluation of nitrogen conversion pathway during composting under amoxicillin stress: Mainly driven by core microbial community

The aim of this study was to explore the effects of different concentrations of amoxicillin (AMX) on nitrogen (N) conversion and bacterial community structure during aerobic composting. The results revealed that AMX led to a lower temperature and increased pH during the thermophilic phase of composting. AMX inhibited the relative abundance (RA) of Firmicutes at the initial phase but increased the RA of Actinobacteria and Bacteroidetes compared with the control treatment. The core bacterial community linked to N conversion was determined by network analysis. AMX decreased the RA of amoA, a gene related to nitrification, and increased the RAs of nirK and nosZ, which are related to denitrification. Meanwhile, AMX inhibited the activity of ammonia-oxidizing bacteria but promoted the activity of denitrifying bacteria. Therefore, the main adverse effect of AMX on compost quality is to change the microbial community structure and affect the physical and chemical properties of composting.

The "quality" and "quantity" of microbial species drive the degradation of cellulose during composting

The aim of this study was to explore the contribution of microbial community to cellulose degradation during cellulosic wastes composting. Three raw materials with different cellulose content were employed, including rice straws (RS), leaves (L) and mushroom dregs (MD). The cellulose degraded by 92.09%, 56.68% and 40.03% during RS, L and MD composting, respectively, which could be explained by cellulases activity. Besides, each cellulase were only linked to a specific group of bacteria, thus cellulose degradation needed the cooperation of various microorganisms. Ultimately, structural equation models verified that the richness and evenness of microbial community were the primary driving factors of cellulose degradation. The richness symbolized microbial functionality, which was equivalent to the "quality" of microbial species. The evenness symbolized the scope of function, which was equivalent to the "quantity". Therefore, the "quality" and "quantity" of microbial species drove cellulose degradation during RS, L and MD composting.