Joint effects of carbon nanotubes and copper oxide nanoparticles on fermentation metabolism towards Saccharofermentans acetigenes: Enhancing environmental adaptability and transcriptional expression

Exploring bacterial community assembly in vadose and saturated zone soil for tailored bioremediation of a long-term hydrocarbon-contaminated site

Indigenous soil microbial communities play a pivotal role in the in situ bioremediation of contaminated sites. However, research on the distribution characteristics of microbial communities at various soil depths remains limited. In particular, there is little information on the assembly of microbial communities, especially those with degradation potential, in the vadose and saturated zones of hydrocarbon-contaminated sites. In this study, 18 soil samples were collected from the vadose zone and saturated zone at a long-term hydrocarbon-contaminated site. The diversity, composition, and driving factors of assembly of the soil bacterial community were determined by high-throughput sequencing analysis. Species richness and diversity were significantly higher in the vadose zone soils than in the saturated zone soils. Significant differences in abundance at both the phylum and genus levels were observed between the two zones. Soil bacterial community assembly was driven by the combination of pollution stress and nutrients in the vadose zone but by nutrient limitations in the saturated zone. The abundance of dechlorinating bacteria was greater in the saturated zone soils than in the vadose zone soils. Compared with contaminant concentrations, nutrient levels had a more pronounced impact on the abundance of dechlorinating bacteria. In addition, the interactions among dechlorinating bacterial populations were stronger in the saturated zone soils than in the vadose zone soils. These findings underscore the importance of comprehensively understanding indigenous microbial communities, especially those with degradation potential, across different soil layers to devise specific, effective in situ bioremediation strategies for contaminated sites.

Effect of high corn straw loads on short-chain fatty acid production in semi-continuous rumen reactor

Ruminal microorganisms can efficiently hydrolyze biomass waste for short-chain fatty acid (SCFA) production. However, the continuous SCFA production by ruminal microorganisms at high loads is unclear. In this study, the effectiveness of a rumen semi-continuous reactor at high load for SCFA production was explored. Results showed that SCFA concentration reached 13.3 g/L at 8 % (w/v) corn straw load. The higher the corn straw load, the lower the volatile solid removal. Rumen microbial community composition changed significantly with increasing corn straw load. A significant decrease in bacterial diversity and abundance was observed at 8 % corn straw load. Some core genera such as Prevotella, Saccharofermentans, and Ruminococcus significantly increased. As corn straw loads increased, the expression of functional genes related to hydrolysis and acidogenesis gradually increased. Thus, the 8.0 % load is suitable for SCFA production. These findings provide new insights into high load fermentation of ruminal microorganisms.

Synergic effects of free ammonia and sodium percarbonate for enhancing short-chain fatty acid production during sludge fermentation: Effectiveness assessment and mechanism elucidation

The production of short-chain fatty acids (SCFAs) from waste activated sludge (WAS) via anaerobic fermentation is typically restricted by poor sludge decomposition capacity and low substrate-availability. Therefore, the free ammonia (FA)‑sodium percarbonate (SPC) technology was presented to successfully overcome the limitation while addressing unsatisfactory acidogenic fermentation pretreated with sole FA or SPC. It revealed that FA + SPC co-pretreatment could boost the SCFA concentration to 347.1 mg COD/g VSS at 180 mg/L FA and 0.15 g/g TSS SPC. In-depth studies demonstrated that FA + SPC pretreatment greatly improved sludge disintegration, biodegradability of substrates and acidification of hydrolysis products. Furthermore, FA + SPC co-pretreatment stimulated the activity of hydrolytic and acidogenic enzymes but inhibited methanogenic enzymes while changing the microbial structure and promoting the enrichment of fermentation microorganisms. The synergistic effect of FA and SPC in this work improves the yield of SCFAs from WAS and facilitates the study of WAS carbon resource recovery.

Disinfectant sodium dichloroisocyanurate synergistically strengthened sludge acidogenic process and pathogens inactivation: Targeted upregulation of functional microorganisms and metabolic traits via self-adaptation

Harmless and resourceful treatment of waste activated sludge (WAS) have been the crucial goal for building environmental-friendly and sustainable society, while the synergistic realization approach is currently limited. This work skillfully utilized the disinfectant sodium dichloroisocyanurate (NaDCC) to simultaneously achieve the pathogenic potential inactivation (decreased by 60.1 %) and efficient volatile fatty acids (VFAs) recovery (increased by 221.9 %) during WAS anaerobic fermentation in rather cost-effective way (Chemicals costs:0.4 USD/kg VFAs versus products benefits: 2.68 USD/kg chemical). Mechanistic analysis revealed that the C=O and NCl bonds in NaDCC could spontaneously absorb sludge (binding energy -4.9 kJ/mol), and then caused the sludge disintegration and organic substrates release for microbial utilization due to the oxidizability of NaDCC. The disruption of sludge structure along with the increase of bioavailable fermentation substrates contributed to the selectively regulation of microbial community via enriching VFAs-forming microorganisms (e.g., Pseudomonas and Streptomyces) and reducing VFAs-consuming microorganisms, especially aceticlastic methanogens (e.g., Methanothrix and Methanospirillum). Correspondingly, the metabolic functions of membrane transport, substrate metabolism, pyruvate metabolism, and fatty acid biosynthesis locating in the central pathway of VFAs production were all upregulated while the methanogenic step was inhibited (especially acetate-type methanogenic pathway). Further exploration unveiled that for those enriched functional anaerobes were capable to activate the self-adaptive systems of DNA replication, SOS response, oxidative stress defense, efflux pump, and energy metabolism to counteract the unfavorable NaDCC stress and maintain high microbial activities for efficient VFAs yields. This study would provide a novel strategy for synergistic realization of harmless and resourceful treatment of WAS, and identify the interrelations between microbial metabolic regulations and adaptive responses.

Multifaceted synergistic facilitation mechanism of conductive polymers in promoting selenite bioreduction and biological detoxification

Here, polypyrrole (PPY) was first used to the bioreduction of toxic selenite, while the acceleration effect and mechanism were explored. Experiment results suggested that PPY could enhance the selenite bioreduction from 0.42 to 1.04 mg/(L·h). The tests of electrochemical analysis and cytochrome c (cyt-c) content confirmed that PPY promoted the intracellular/intracellular electron transfer of Shewanella oneidensis·MR-1 in selenite bioreduction process. The enhancement of metabolic activity by PPY contributed to biological detoxification, which was manifested in the increased extracellular polymeric substances (EPS), adenosine triphosphate (ATP), electron transfer system activity (ETSA), membrane permeability and enzyme activity. Transcriptome analysis of DEGs, KEGG pathway enrichment and GO functional classification verified that the environmental adaptability of Shewanella oneidensis·MR-1 was enhanced with the addition of PPY. The transmission electron microscopy (TEM) images indicated that PPY promoted the biosynthesis of selenium nanoparticles (SeNPs), which was beneficial to reduce cell damage. Combined with the above results, a multifaceted synergistic facilitation mechanism based on "conductive cross-linking network" was elaborated from electron transfer, microbial metabolism and environmental adaptability. This study shed light the effect of conductive polymers (CPs) on selenite bioreduction and provided new insights into the bioremediation of toxic pollutants.

Ultrasonic-assisted hypochlorite activation accelerated volatile fatty acids production during sewage sludge fermentation: Critical insights on solubilization/hydrolysis stages and microbial traits

The effective disruption of extracellular polymeric substances using appropriate pretreatment is critical to achieving resource recovery from sewage sludge (SS) by anaerobic fermentation. This work proposed an ultrasonic-assisted hypochlorite activation strategy for enhanced production of volatile fatty acids (VFAs) during SS fermentation. The results demonstrated that after individual ultrasonic and hypochlorite pretreatment, the maximum VFAs yield improved by 8 and 107% with that in control, respectively, while a combination of both techniques led to an improvement of 119%, indicating their synergistic effects on SS fermentation. This method enhanced the solubilization and hydrolysis efficiencies and contributed to the increased biodegradable substrates, which would be beneficial in enhancing microbial activity for VFAs production. The functional anaerobes, metabolic pathways, and gene expressions involved in VFAs biosynthesis were effectively improved. This work would bring a novel insight into the disposal of municipal solid waste for resource recovery.

Valorization of food waste into short-chain fatty acids via enzymatic pretreatment: Effects of fermentation-pH on acid-producing processes and microbial metabolic functions

Food waste (FW) has been widely considered as an essential resource for the production of short-chain fatty acids (SCFAs), an important class of chemicals with wide applications and over 20 million tons of annual market demand, by anaerobic fermentation. Although enzymatic pre-treatment could improve the FW biodegradation efficiency, resulting in enhanced efficiency of solubilization and hydrolysis, the influence of fermentation-pH on the SCFAs production and the metabolic functions, have rarely been reported. This study demonstrated that the uncontrolled pH could efficiently lead to an increase in the SCFAs production (33011 mgCOD/L) during long-term fermentation of FW (mainly consisting of 48.8% carbohydrates, 20.6% proteins, and 17.4% lipids) after enzymatic pre-treatment compared to the control (16413 mgCOD/L). Meanwhile, the acid-producing processes (i.e., solubilization, hydrolysis, and acidification) were synchronously enhanced by the enzymatic pre-treatment and no control over fermentation-pH. Metagenomic analysis revealed that the acid-forming microorganisms (i.e., Olsenella sp. and Sporanaerobacter) were significantly accumulated, and the corresponding genetic expressions related to extracellular hydrolysis (i.e., aspB and gltB), membrane transport (i.e., metL and glnH), and intracellular material metabolism (i.e., pfkA and ackA) were evidently stimulated, thereby promoting ultimate SCFAs generation. Although the alkaline conditions could further slightly increase the SCFAs yield slightly (37100 mgCOD/L) and also stimulate the metabolic activities, it might not be suitable for large-scale practical applications due to additional costs associated with alkaline chemical additives.

Boosting short-chain fatty acids production from co-fermentation of orange peel waste and waste activated sludge: Critical role of pH on fermentation steps and microbial function traits

The anaerobic co-fermentation of orange peel waste (OPW) and waste activated sludge (WAS) for useful short-chain fatty acids (SCFAs) generation presents an environmentally friendly and efficient method for their disposal. This study amied to investigate the effects of pH regulation on OPW/WAS co-fermentation, and found that the alkaline pH regulation (pH 9) significantly enhanced the promotion of SCFAs (11843 ± 424 mg COD/L), with a high proportion of acetate (51%). Further analysis revealed that alkaline pH regulation facilitated solubilization, hydrolysis, and acidification while simultaneously inhibiting methanogenesis. Furthermore, the functional anaerobes, as well as the expressions of corresponding gene involved in SCFAs biosynthesis, were generally improved under alkaline pH regulation. Alkaline treatment might played a critical role in alleviating the toxicity of OPW, resulting in improving microbial metabolic activity. This work provided an effective strategy to recover biomass waste as high-value products, and insightful understanding of microbial traits during OPW/WAS co-fermentation.

Functionalization of ampicillin and gentamicin with biogenic copper nanoparticles (CuNPs) remodel antimicrobial and cytotoxic outcome against MDR clinical isolates

The present study reports the functionalization of antibiotic-conjugated Alternanthera pungens and Trichodesma indicum copper nanoparticles (CuNPs). Initially, antibiotic profiling of multi-drug resistant (MDR) clinical isolates against five antibiotics was verified and then gentamicin and ampicillin conjugates of CuNPs were prepared. Biosynthesized nanostructures were characterized through UV-visible spectroscopy, Fourier-transformed infrared spectroscopy, X-ray diffraction and scanning electron microscope. Biogenic synthesized CuNPs displayed highest antibacterial activity (24.0-31.3 mm inhibition zones) when capped with gentamicin as compared to the ampicillin-conjugated NPs which showed resistance against most of the bacterial species. A. pungens-derived conjugates of gentamicin (CuAp-GNT) along with the vehicle revealed 4.86 ± 0.20% and 4.25 ± 2.96% hemolytic potential and highest MDA production in S. typhimurium (3.18 ± 1.52 µg/mL and 6.31 ± 3.49 µg/mL) and K. pneumoniae (2.99 ± 0.90 µg/mL and 4.06 ± 1.20 µg/mL). Similarly, CuAp-GNT also showed highest DNA protection ability by displaying 1342.99 ± 11.87 band intensity. All-inclusive, CuAp showed more promising effects when conjugated with gentamicin indicating that capping of gentamicin with the active components of the plant-based copper nanostructures increases the antibacterial capacity of the drug. Hence, conjugation of antibiotics with bio-based sources offers great potential for identifying potent drug leads.

Enhancement of hexavalent chromium reduction by Shewanella oneidensis MR-1 in presence of copper nanoparticles via stimulating bacterial extracellular electron transfer and environmental adaptability

The bioreduction of hexavalent chromium (Cr(VI)) depends highly on bacterial activity, while the release of copper nanoparticles (Cu NPs) poses threats to microorganisms in the environment. This work demonstrated that Cr(VI) reduction efficiency of Shewanella oneidensis MR-1 was remarkably enhanced by 83.7% under 20 mg/L Cu NPs exposure. Cu NPs improved the electron migration capacity of Shewanella oneidensis MR-1 by enhancing bioelectrochemical performance and flavin mononucleotide secretion. Moreover, key genes related to extracellular electron transfer pathways, including direct electron transfer through outer-membrane proteins, flavin-mediated electron transfer, and conductive flagella, were generally upregulated under Cu NPs exposure. In addition, environmental adaptability of Shewanella oneidensis MR-1 was enhanced under Cu NPs exposure by improving environmental information processing and energy and reducing power production, promoting Cr(VI) reduction by Shewanella oneidensis MR-1. This work indicated that Cu NPs could enhance Cr(VI) reduction by Shewanella oneidensis MR-1 through regulating extracellular electron transfer and environmental adaptability.

Valorization of food waste fermentation liquid into single cell protein by photosynthetic bacteria via stimulating carbon metabolic pathway and environmental behaviour

Single cell protein (SCP) production by photosynthetic bacteria (PSB) is dependent on the bioavailability of carbon source, while sufficient volatile fatty acids (VFAs) in food waste fermentation liquid might be a potential alternative. It is unclear how the fermentation liquid affects the SCP biosynthesis and the related metabolic mechanism. This work demonstrated that the SCP production could be improved effectively (2088.4 mg/L) with high conversion capacity of carbon source (0.99 mg-biomass/mg-COD) by regulating carbon source level. PSB preferred to utilize the VFAs in food waste fermentation liquid. The carbon metabolic pathways (e.g., the transformation of VFAs to acetyl-CoA, and tricarboxylic acid cycle) involved in the SCP production were enhanced under optimal condition. Moreover, optimal carbon source regulation could significantly stimulate the environmental behaviour of PSB (e.g., two-component system, quorum sensing, and ATP-binding cassette transporter) involved in adaptation to external stimulus and maintaining high bacterial activity, resulting in SCP yield promotion.

Antagonistic effects of surfactants and CeO2 nanoparticles co-occurrence on the sludge fermentation process: Novel insights of interaction mechanisms and microbial networks

Various pollutants commonly co-exist in the waste active sludge (WAS), but the interactive effects and mechanisms of co-occurrence pollutants on the WAS treatment remain unclear. This work mainly investigated the impacts of different surfactants (i.e., HTAB and SDBS) and CeO₂ nanoparticles (NPs) co-occurrence on the WAS fermentation for short-chain fatty acids (SCFAs) production, and found that the CeO₂ NPs coexisting with surfactants caused antagonistic effects on the SCFAs generation (10.7% and 33.9% inhibition by HTAB and SDBS, respectively). The surfactants and CeO₂ NPs co-occurrence restrained the solubilization, hydrolysis, and acidification steps simultaneously. Moreover, the functional hydrolytic-acidogenic bacterial (e.g., Haliangium and Bacteroidetes sp.) and the microbial metabolic networks involved in extracellular hydrolysis (e.g., pepd and NEU1), substrate metabolism (e.g., ALDO and asdA), and fatty acid biosynthesis (e.g., aarC and pct) were all downregulated by 4.3-53.8% in the reactors with surfactants and CeO₂ NPs co-occurrence. The presence of surfactants enhanced the dispersibility and stability of CeO₂ NPs and the Ce dissolution (1.5-3.0 times higher). Also, surfactants contributed to the WAS disintegration, which could improve the interactive chances of microorganisms entrapped in WAS and CeO₂ NPs by promoting the transportation channels, and therefore aggravated the toxicity towards anaerobic species.

Mechanisms of allicin exposure for the sludge fermentation enhancement: Focusing on the fermentation processes and microbial metabolic traits

As a frequently used product with antimicrobial activity, consumed allicin might be discharged and concentrated in waste-activated sludge (WAS). However, the influence of allicin (as an exogenous pollutant) on WAS fermentation has not been clearly revealed. This study aimed to disclose the impacts of allicin on volatile fatty acid (VFA) generation during WAS fermentation. The results showed that the appropriate presence of allicin (10 mg/g TSS) significantly enhanced the VFA yield (1894 versus 575 mg COD/L in the control) with increased acetate proportion (24.3%). Further exploration found that allicin promoted WAS solubilization, hydrolysis and acidification simultaneously. Metagenomic analysis revealed that the key genes involved in extracellular hydrolysis metabolism (i.e., CAZymes), membrane transport (i.e., gtsA and ytfT), substrate metabolism (i.e., yhdR and pfkC) and fatty acid synthesis (i.e., accA and accD) were all highly expressed. Allicin also induced the bacteria to produce more signalling molecules and regulate cellular functions, thereby enhancing the microbial adaptive and regulatory capacity to the unfavourable environment. Moreover, the variations in fermentative microbes and their contributions to the upregulation of functional genes (i.e., ytfR, gltL, INV, iolD and pflD) for VFA generation were disclosed. Overall, the simultaneous stimulation of functional microbial abundances and metabolic activities contributed to VFA production in allicin-conditioned reactors.

Long-term effects of copper nanoparticles on volatile fatty acids production from sludge fermentation: Roles of copper species and bacterial community structure

The long-term effects of copper nanoparticles (Cu NPs) on volatile fatty acids (VFAs) production during the waste activated sludge (WAS) fermentation, and the underlying mechanisms regarding copper species distribution and bacterial community evolution were explored. The yield of VFAs in the control was 1086 mg COD/L, whereas those were inhibited by 11.1%, 56.0% and 83.1%, with 25, 50, and 100 mg/g-TSS Cu NPs, respectively. Further investigation indicated that Cu NPs severely affected hydrolysis and acidification of WAS in a dose-dependent manner, while had little impact on solubilization. Besides, Cu NPs enriched the acid-consuming anaerobe while reducing the acid-forming bacteria. The metabolic pathways, microbial function, and enzymatic activities involved were inhibited at all tested dosages. Moreover, soluble and acid-extractable fractions dominated the copper speciation, which were also the main factors inhibiting the VFA production. This study provides a new perspective to interpret the long-term impacts of Cu NPs on WAS fermentation.

Deciphering the key operational factors and microbial features associated with volatile fatty acids production during paper wastes and sewage sludge co-fermentation

This work explored the feasibility of paper waste (PW)/sewage sludge (SS) co-fermentation for volatile fatty acids (VFAs) production, and disclosed its correlation with the key operational parameters (i.e., pH and PW/SS ratio). The results indicated that the maximal VFAs was 251.55 mg COD/g TSS at optimal conditions, which was approximately 10-folds of sole SS fermentation. PW feeding contributed to the bioavailable substrates and C/N balance during co-fermentation process. The pH exhibited evident impacts on organics solubilization/hydrolysis, in which acidic pH was more beneficial for carbohydrates metabolism while alkaline pH was better for proteins. Under optimal operational conditions, the metabolic functions associated with VFAs production (i.e., substrate membrane transport, intracellular metabolism and VFAs biosynthesis) were up-regulated. Moreover, functional microorganisms (i.e., Saccharofermentans and Bacteroides) responsible for VFAs generation were enriched. This work provided an innovative approach to recovery valuable products from biowastes, and in-depth understandings of microbial features in PW/SS co-fermentation systems.

Copper Tolerance Mechanism of the Novel Marine Multi-Stress Tolerant Yeast Meyerozyma guilliermondii GXDK6 as Revealed by Integrated Omics Analysis

Various agricultural products used in food fermentation are polluted by heavy metals, especially copper, which seriously endangers human health. Methods to remove copper with microbial strategies have gained interests. A novel Meyerozyma guilliermondii GXDK6 could survive independently under high stress of copper (1400 ppm). The copper tolerance mechanism of GXDK6 was revealed by integrated omics in this work. Whole-genome analysis showed that nine genes (i.e., CCC2, CTR3, FRE2, GGT, GST, CAT, SOD2, PXMP4, and HSP82) were related to GXDK6 copper tolerance. Copper stress elevated glutathione metabolism-related gene expression, glutathione content, and glutathione sulfur transferase activity, suggesting enhanced copper conjugation and detoxification in cells. The inhibited copper uptake by Ctr3 and enhanced copper efflux by Ccc2 contributed to the decrease in intracellular copper concentration. The improved expression of antioxidant enzyme genes (PXMP4, SOD2, and CAT), accompanied by the enhanced activities of antioxidant enzymes (peroxidase, superoxide dismutase, and catalase), decreased copper-induced reactive oxygen species production, protein carbonylation, lipid peroxidation, and cell death. The metabolite D-mannose against harsh stress conditions was beneficial to improving copper tolerance. This study contributed to understanding the copper tolerance mechanism of M. guilliermondii and its application in removing copper during fermentation.