Klebsiella oxytoca (EN-B2): A novel type of simultaneous nitrification and denitrification strain for excellent total nitrogen removal during multiple nitrogen pollution wastewater treatment

Microbial communities in low-pH concrete: Implications for deep geological radioactive waste repositories

Deep geological repositories (DGRs), i.e., underground engineered structures designed to enclose radioactive waste, require strict safety regulations for long-term maintenance. One of the primary construction materials utilized within DGRs is concrete, which often interfaces with compacted bentonite. Concerns have arisen, however, regarding the potential degradation of bentonite swelling properties over time due to the highly alkaline nature of conventional concrete, prompting an investigation into alternative materials, such as low-pH concrete (LPC; pH 10-11). Nevertheless, questions persist regarding the long-term durability of structures composed of LPC due to the influence of microorganisms, which can be more diverse and more metabolically active in LPC than standard concrete. In this review, we explore and discuss the role of microorganisms in LPC, focusing on their potential positive and negative impacts on concrete durability in both aerobic and anaerobic phases within the DGR environment. We summarize how microbial colonization occurs, the potential sources of microbial migration, and the key microbial groups (e.g., autotrophs, mixotrophs, heterotrophs) that could affect LPC in long-term.

New Insight Into the Mechanism of Nitrite Enhancement on Heterotrophic Nitrification and Aerobic Denitrification Bacterium in Gene Expression

The growth and nitrogen metabolism of heterotrophic nitrification-aerobic denitrification (HN-AD) bacteria are affected by nitrite, but the mechanisms underlying this for strain Acinetobacter johnsonii EN-J1 are unclear. In this study, the addition of 10 mg/L nitrite increased the reduction rate of ammonium by 1.0 mg/L/h, and 20 mg/L nitrite increased the reduction rate of nitrate by 3.9 mg/L/h. Compared with the control, the nitrate reductase activity, electron transfer activity, and adenosine triphosphate content of EN-J1 were enhanced by 142.0%, 278.0% and 279.0%, respectively, in the nitrate removal process after the addition of 20 mg/L nitrite. The whole genome was annotated with nitrogen removal genes such as narGHI, narK, nsrR, nirBD, nasA, glnA, gltB, gdhA and amt. Transcriptome analysis showed that nitrite triggered significant upregulation of several key pathways, including nitrogen metabolism, the tricarboxylic acid cycle, and amino acid metabolism for enhancing denitrification. The expression of key denitrification genes (narG, narK, hmp, nirBD, glnA and nasA) was detected by real-time quantitative polymerase chain reaction. These results suggested that nitrite enhances denitrification by increasing the expression of denitrification genes, electron transfer and adenosine triphosphate levels, which is important for elucidating the mechanism of nitrite promotion of biological nitrogen removal efficiency.

Efficient ammonia oxidation by Pseudomonas citronellolis strain YN-21 under strongly acidic conditions: Performance and mechanism

Ammonia oxidation microorganisms generally tend to have low rates of ammonia oxidation under acidic conditions, as the protonated ammonia is not a substrate for ammonia monooxygenase. In this work, heterotrophic ammonia oxidation bacteria (HAOB) Pseudomonas citronellolis strain YN-21 showed high efficiency in removing NH4+ (12.7 mg/L/h) even at initial pH 4.5. The potential acid resistance mechanisms (H+ efflux, H+ consumption, and production of alkaline substances) maintained intracellular pH neutrality. Transcriptome analysis showed that genes involved in amino acid metabolism, carbohydrate metabolism, ABC transporter and nitrogen metabolism were significantly up-regulated, which facilitated the rapid removal of NH4+ in an acidic environment. Moreover, urea could be used as an alternative nitrogen source for YN-21 in a strongly acidic environment, and the production of NH3 from urea hydrolysis provided a substrate for ammonia oxidation. These results provide new insights into efficient ammonia oxidation in acidic environments.

Efficient strategy for employing HN-AD bacterium enhanced biofilter reactors to remove NH3 and reduce secondary pollution

Heterotrophic nitrification-aerobic denitrification (HN-AD) strain (Paracoccus denitrificans HY-1) was employed in this study to enhance the removal efficiency of NH3 in a biological trickling filter (BTF) reactor. The results demonstrated that inoculation with HY-1 and packed with bamboo charcoal as filler significantly improved the RE of NH3 in BTF, reaching 96.52 % under 27 s of empty bed residence time (EBRT) and 812.56 ppm of inlet gas concentration. Meanwhile, the titer of NH4+-N, NO2--N, and NO3--N in the circulating fluid were merely 8.52 mg/L, 5.14 mg/L, and 18.07 mg/L, respectively. Microbial community and metabolism analyses revealed that HY-1 have successfully colonized in the BTF, and the high expression of denitrification-related genes (nar, nap, nir, nor and nos) further confirmed that the inoculation of HY-1 greatly improved both nitrification and denitrification metabolism. Furthermore, the biofilter reactor inoculated with HY-1 was applied at a large-scale piggery and exhibited remarkable odor removal effect, in which 99.61 % of NH3 and 96.63 % of H2S were completely eliminated. In general, the HN-AD bacterium could strengthen the performance of BTF reactor and reduce the secondary pollution of circulating fluid during bio-deodorization.

A novel Zobellella endophytica W14 strain for nitrogen removal from hypersaline wastewater through simultaneous nitrification and denitrification

To address the challenges associated with biological treatment of high-salinity wastewater, a novel salt-tolerant strain, Zobellella endophytica W14, was isolated. This strain exhibited heterotrophic nitrification-aerobic denitrification (HN-AD) capabilities. Strain W14 could grow and remove ammonium in high-salinity environments with salinity levels ranging from 0 to 11% (w/v). At 5% salinity, strain W14 demonstrated high removal efficiencies for nitrite, ammonium, and nitrate (100%, 99.58%, and 98.85%, respectively), when these compounds were provided as the single source of nitrogen. In cases of mixed nitrogen sources, total nitrogen removal efficiency of strain reached 95.22%. The nitrogen balance analysis confirmed the utilization of nitrogen sources by strain W14 through both assimilation and dissimilation. Through the amplification of functional genes involved in nitrogen metabolism (i.e., hao, napA, nirS, and nosZ), the nitrogen metabolism pathway of strain W14 was predicted to be: NH₄⁺ → NH₂OH → NO₂⁻ → NO₃⁻ → NO₂⁻ → NO → N₂O → N₂. The study reveals that the novel W14 strain can efficiently remove total nitrogen from high-salinity wastewater and has significant potential for biological treatment of such wastewater.

Simultaneous aerobic nitrogen and phosphorus removal by novel halotolerant fungus Mucor circinelloides SNDM1: Function and metabolism pathway

Fungi capable of simultaneous nitrogen and phosphorus removal from wastewater is rarely found. Here, a novel fungal strain (SNDM1) performing heterotrophic nitrification, aerobic denitrification, and phosphate removal was isolated and identified as Mucor circinelloides. The favorable nutrient removal conditions by the strain using glucose were C/N ratios of 25-30, salinities of 0 %-3 %, and pH of 7.5. Strain SNDM1 achieved ammonium, nitrite, nitrate, and phosphate removal rates of 5.23, 10.08, 4.88, and 0.97 mg/L/h. Nitrogen balance indicated that gaseous (18.60 %-24.55 %) and intracellular nitrogen (43.76 %-70.63 %) were primary fate of initial nitrogen. Enzyme activity revealed that ammonium removal occurred through heterotrophic nitrification and aerobic denitrification. Removed phosphorus was mainly transformed into cell membranes (56 %-64 %) and extracellular polymeric substances (20 %-26 %). Orthophosphate was the major intracellular phosphorus species, while polyphosphate and pyrophosphate existed extracellularly. These findings highlight the potential of this fungal strain for bioremediating polluted wastewater.

Trade-off between sulfidated zero-valent iron reactivity and air stability: Regulation of iron sulfides by ammonium dihydrogen phosphate

The reactivity and stability of zero-valent iron (ZVI) and sulfidated zero-valent iron (S-ZVI) are inherently contradictory. Iron sulfides (FeSX) on the S-ZVI surface play multiple roles, including electrostatic adsorption and catalyzing reduction. We proposed to balance the reactivity and air stability of S-ZVI by regulating FeSX. Benefiting from the superior coordination and accelerate electron transport capabilities of phosphate, herein, eco-friendly ammonium dihydrogen phosphate (ADP) was employed to synthesize N, P, and S-incorporated ZVI (NPS-ZVI) and regulate the FeSX. Raman, FTIR, XPS, and density functional theory (DFT) calculations were combined to reveal that HPO42- acts as the main P species on the Fe surface. The superior reactivity of NPS-ZVI was quantified by kobs, kSA, and kM of Cr(VI), which were 210.77, 27.44, and 211.17-fold than ZVI, respectively. NPS-ZVI demonstrated excellent reusability, with no risk of secondary pollution. Critically, NPS-ZVI could effectively maintain FeSX stability under the combination of diffusion limitation and surface protection mechanisms of ADP. The superior reactivity of NPS-ZVI was attributed to the fact that ADP maintains FeSX stability and accelerates electron transport. This study provides a novel strategy in balancing the reactivity and air stability of S-ZVI and offers theoretical support for material modification.

Acid-tolerant Pseudomonas citronellolis YN-21 exhibits a high heterotrophic nitrification capacity independent of the amo and hao genes

Heterotrophic nitrifying bacteria are found to be promising candidates for implementation in wastewater treatment systems due to their tolerance to extreme environments. A novel acid-resistant bacterium, Pseudomonas citronellolis YN-21, was isolated and reported to have exceptional heterotrophic nitrification capabilities in acidic condition. At pH 5, the highest NH4+ removal rate of 7.84 mg/L/h was displayed by YN-21, which was significantly higher than the NH4+ removal rates of other strains in neutral and alkaline environments. Remarkably, a distinct accumulation of NH2OH and NO3- was observed during NH4+ removal by strain YN-21, while traditional amo and hao genes were not detected in the genome, suggesting the possible presence of alternative nitrifying genes. Moreover, excellent nitrogen removal performance was displayed by YN-21 even under high concentrations of metal ion stress. Consequently, a broad application prospect in the treatment of leather wastewater and mine tailwater is offered by YN-21.

Assessment of nitrification process in a sequencing batch reactor: Modelling and genomic approach

Nitrification of ammoniacal nitrogen (N-NH4+) to nitrate (N-NO3-) was investigated in a lab-scale sequencing batch reactor (SBR) to evaluate its efficiency. During the nitrification process the removal of N-NH4+ reached 96%, resulting in 73% formation of N-NO3-. A lineal correlation (r2 = 0.9978) was obtained between the concentration of volatile suspended solids (VSS) and the maximal N-NO3- concentration at the end of each batch cycle under stationary state. The bacterial taxons in the initial inoculum were identified, revealing a complex diverse community mainly in the two major bacterial phyla Proteobacteria and Actinobacteria. The FAPROTAX algorithm predicted the presence in the inoculum of taxa involved in relevant processes of the nitrogen metabolism, highlighting the bacterial genera Nitrospira and Nitrosomonas that are both involved in the nitrification process. A kinetic model was formulated for predicting and validating the transformation of N-NH4+, N-NO2- and N-NO3- and the removal of organic and inorganic carbon (TOC and IC, respectively). The results showed how the increase in biomass concentration slowed down the transformation to oxidised forms of nitrogen and increased denitrification in the settling and filling stages under free aeration conditions.

Removal of nitrate nitrogen by Pseudomonas JI-2 under strong alkaline conditions: Performance and mechanism

The nitrate nitrogen removal characteristics of Pseudomonas JI-2 under strong alkaline conditions and the composition and functional groups of extracellular polymeric substance were analyzed. Furthermore, nontargeted metabonomics and bioinformatics technology were used to investigate the alkaline tolerance mechanism. JI-2 removed 11.05 mg N/(L·h) of nitrate with the initial pH, carbon to nitrogen ratio and temperature were 11.0, 8 and 25 °C respectively. Even when the pH was maintained at 11.0, JI-2 could still effectively remove nitrate. JI-2 contains a large number of Na+/H+ antiporters, such as Mrp, Mnh (mnhACDEFG) and Pha (phaACDEFG), which can stabilize the intracellular acid-base environment, and SlpA can enable quick adaptation to alkaline conditions. Moreover, JI-2 responds to the strong alkaline environment by secreting more polysaccharides, acidic functional groups and compatible solutes and regulating key metabolic processes such as pantothenate and CoA biosynthesis and carbapenem biosynthesis. Therefore, JI-2 can survive in strong alkaline environments and remove nitrate efficiently.

Low-temperature torrefaction assisted with solid-state KOH/urea pretreatment for accelerated methane production in wheat straw anaerobic digestion

Low-temperature torrefaction assisted with solid-state KOH/urea applied onto wheat straw was proposed to break down the lignocellulosic material to enhance biomethane production in anaerobic digestion (AD). The optimization of key parameters applying the Box-Behnken design and response surface methodology showed that an addition of 0.1 g/g_straw KOH/urea at 180 °C while torrefying for 30 min was the optimal condition for producing biomethane. Results indicate that co-applying KOH and urea in torrefaction synergistically enhanced the biodegradability of straw by effectively removing lignin and largely retaining cellulose, giving rise to a 41 % increase in the cumulative methane production compared to untreated straw (213 mL/g-volatile solids (VS_raw)) from batch AD. Additionally, the nitrogen- and potassium-rich digestates helped to improve soil fertility, thus achieving a zero-waste discharge. This study demonstrated the feasibility of using solid-state KOH/urea assisted low-temperature torrefaction as an effective pretreatment method to promote methane production during AD.