Development of novel recombinant peroxidase secretion system from Pseudomonas putida for lignin valorisation

Efficient biological funneling of lignin into 2-pyrone-4,6-dicarboxylic acid via electrocatalytic depolymerization and genetically engineered Pseudomonas putida KT2440

Lignin has been an abundant biomass resource with remarkable potential to produce value-added chemicals. The comprehensive process from lignin degradation to the biological conversion of its monomers remains a challenge for demonstrating the industrial applicability of lignin refinery. Herein, Pseudomonas putida KT-PDCV overexpressing homologous vanillate-O-methylase (VanAB) could efficiently produce 2-pyrone-4,6-dicarboxylic acid (PDC) from lignin-derived compounds (LDC), including S-unit monomers (e.g., syringate and syringaldehyde). The engineered strain efficiently consumed syringate with other types of LDCs, such as p-coumarate and ferulate, and produced PDC up to 67.2 mM from mixed model lignin with a molar yield of 98 %. The efficient electrolyzer degraded practical lignin into the S-unit-dominant mixture of LDCs with remarkable performance. In addition, P. putida KT-PDCV directly utilized the mixture of LDCs without significant susceptibility to impurities, yielding a PDC of 0.91 mM with a molar yield of 62.3 %.

Lignin-Degrading Enzymes and the Potential of Pseudomonas putida as a Cell Factory for Lignin Degradation and Valorization

Efficient utilization of lignin, a complex polymer in plant cell walls, is one of the key strategies for developing a green and sustainable bioeconomy. However, bioconversion of lignin poses a significant challenge due to its recalcitrant nature. Microorganisms, particularly fungi and bacteria, play a crucial role in lignin biodegradation, using various enzymatic pathways. Among bacteria, Pseudomonas putida is considered a promising host for lignin degradation and valorization, due to its robust and flexible metabolism and its tolerance to many noxious and toxic compounds. This review explores the various mechanisms of lignin breakdown by microorganisms, with a focus on P. putida's metabolic versatility and genetic engineering potential. By leveraging advanced genetic tools and metabolic pathway optimization, P. putida can be engineered to efficiently convert lignin into valuable bioproducts, offering sustainable solutions for lignin valorization in industrial applications.

A comprehensive review on biological funnel mechanism in lignin valorization: Pathways and enzyme dynamics

Lignin, a significant byproduct of the paper and pulp industry, is attracting interest due to its potential utilization in biomaterial-based sectors and biofuel production. Investigating biological methods for converting lignin into valuable products is crucial for effective utilization and has recently gained growing attention. Several microorganisms effectively decomposed low molecular weight lignins, transforming them into intermediate compounds via upper and lower metabolic pathways. This review focuses on assessing bacterial metabolic pathways involved in the breakdown of lignin into aromatic compounds and their subsequent utilization by different bacteria through various metabolic pathways. Understanding these pathways is essential for developing efficient synthetic metabolic systems to valorize lignin and obtain valuable industrial aromatic chemicals. The concept of "biological funneling," which involves examining key enzymes, their interactions, and the complex metabolic pathways associated with lignin conversion, is crucial in lignin valorization. By manipulating lignin metabolic pathways and utilizing biological routes, many aromatic compounds can be synthesized within cellular factories. Although there is insufficient evidence regarding the complete metabolism of polyaromatic hydrocarbons by particular microorganisms, understanding lignin-degrading enzymes, regulatory mechanisms, and interactions among various enzyme systems is essential for optimizing lignin valorization. This review highlights recent advancements in lignin valorization, bio-funneling, multi-omics, and analytical characterization approaches for aromatic utilization. It provides up-to-date information and insights into the latest research findings and technological innovations. The review offers valuable insights into the future potential of biological routes for lignin valorization.

From agro-food waste to nanoparticles: green synthesis of copper nanoparticles with lignin peroxidase enzyme produced by Anoxybacillus rupiensis using peanut shells

This study presents a novel approach for the eco-friendly green synthesis of copper nanoparticles (Cu NPs) using enzymatic mediation which is an environmentally benign alternative to conventional methods, offering control over particle size and shape. Anoxybacillus rupiensis BS1 thermophilic bacterium was isolated from Erzurum's Pasinler hot spring and lignin peroxidase enzyme production conditions (incubation time 96 h, 40 g/L shell amount, pH 8.5, 150 rpm, and 60 °C temperature) were used in the production of peroxidase enzyme using peanut waste which has been optimized. The characterization of the synthesized Cu NPs was performed using various analytical techniques, including UV-vis spectroscopy, Fourier-transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), and scanning electron microscopy (SEM), confirming the successful production of stable and well-defined nanoparticles. Furthermore, the biological activities of the synthesized Cu NPs were explored, revealing their potential for antimicrobial applications. The antibacterial efficacy of the Cu NPs against some pathogens such as Escherichia coli, Klebsiella pneumoniae, Staphylococcus aureus, Streptococcus pyogenes, and Bacillus cereus was examined. It was determined that Cu NPs were effective on all pathogens and had the highest effectiveness against the S. pyogenes pathogen (19.0 mm). This study not only presents an innovative and sustainable approach for the synthesis of Cu NPs but also highlights the multifaceted biological activities of these nanoparticles, opening avenues for diverse applications in the fields of medicine, agriculture, and environmental remediation. The utilization of peanut shell wastes as a substrate for enzyme production adds value to agricultural by-products, contributing to the development of a circular and sustainable economy.

Strategies in engineering sustainable biochemical synthesis through microbial systems

Growing environmental concerns and the urgency to address climate change have increased demand for the development of sustainable alternatives to fossil-derived fuels and chemicals. Microbial systems, possessing inherent biosynthetic capabilities, present a promising approach for achieving this goal. This review discusses the coupling of systems and synthetic biology to enable the elucidation and manipulation of microbial phenotypes for the production of chemicals that can substitute for petroleum-derived counterparts and contribute to advancing green biotechnology. The integration of artificial intelligence with metabolic engineering to facilitate precise and data-driven design of biosynthetic pathways is also discussed, along with the identification of current limitations and proposition of strategies for optimizing biosystems, thereby propelling the field of chemical biology towards sustainable chemical production.

Secretory Production of the Hericium erinaceus Laccase from Saccharomyces cerevisiae

Mushroom laccases play a crucial role in lignin depolymerization, one of the most critical challenges in lignin utilization. Importantly, laccases can utilize a wide range of substrates, such as toxicants and antibiotics. This study isolated a novel laccase, named HeLac4c, from endophytic white-rot fungi Hericium erinaceus mushrooms. The cDNAs for this enzyme were 1569 bp in length and encoded a protein of 523 amino acids, including a 20 amino-acid signal peptide. Active extracellular production of glycosylated laccases from Saccharomyces cerevisiae was successfully achieved by selecting an optimal translational fusion partner. We observed that 5 and 10 mM Ca2+, Zn2+, and K+ increased laccase activity, whereas 5 mM Fe2+ and Al3+ inhibited laccase activity. The laccase activity was inhibited by the addition of low concentrations of sodium azide and L-cysteine. The optimal pH for the 2,2'-Azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt was 4.4. Guaiacylglycerol-β-guaiacyl ether, a lignin model compound, was polymerized by the HeLac4c enzyme. These results indicated that HeLac4c is a novel oxidase biocatalyst for the bioconversion of lignin into value-added products for environmental biotechnological applications.

Pseudomonas putida as a synthetic biology chassis and a metabolic engineering platform

The soil bacterium Pseudomonas putida, especially the KT2440 strain, is increasingly being utilized as a host for biotransformations of both industrial and environmental interest. The foundations of such performance include its robust redox metabolism, ability to tolerate a wide range of physicochemical stresses, rapid growth, versatile metabolism, nonpathogenic nature, and the availability of molecular tools for advanced genetic programming. These attributes have been leveraged for hosting engineered pathways for production of valuable chemicals or degradation/valorization of environmental pollutants. This has in turn pushed the boundaries of conventional enzymology toward previously unexplored reactions in nature. Furthermore, modifications to the physical properties of the cells have been made to enhance their catalytic performance. These advancements establish P. putida as bona fide chassis for synthetic biology, on par with more traditional metabolic engineering platforms.