Inoculating functional bacteria improved the humification process by regulating microbial networks and key genera in straw composting by adding different nitrogen sources

Improvement in lignocellulose degradation and humus synthesis by adding gallic acid during cow manure composting

The positive effects of adding polyphenols on humification have been widely explored during composting. However, the precise impact of polyphenols on the breakdown of lignocellulose throughout the composting process has not yet been elucidated. Two experimental treatments were designed to explore the mechanism by which adding natural organic phenols affected interactive relationship between lignocellulose hydrolysis and humus synthesis: a control group and a gallic acid (GA)-amended group. The results indicated that GA effectively promoted the transformation of polyphenols. Degradation rates of lignin and cellulose increased by 42.3 % and 20.6 %, respectively. Meanwhile, the synthesis of highly humified component 3 of humic acid increased by 22.1 % in GA group. GA dramatically enriched core bacteria associated with humic acid components. Structural equation model showed that GA directly stimulated microbial decomposition of lignocellulose and indirectly accelerated its degradation by enhancing microbial utilization of polyphenols. These enhancements in polyphenol transformation and lignin degradation collectively promoted compost humification. The addition of GA presents a highly promising approach to accelerate the degradation of recalcitrant lignocellulose and promote compost humification, while simultaneously addressing the waste generated during the production process of polyphenols.

Electric field as an activator of inoculated Bacillus clausii enhances humification during electric field-assisted aerobic composting

A novel electric field-assisted aerobic composting (EAC) method effectively facilitates compost disposal by applying a low electric field to conventional aerobic composting (CAC). The humification effect of inoculation with Bacillus clausii in the EAC system was better than that in the CAC system, so this study focused on the enhancement effect of microbial inoculation in the EAC system. Compared with EAC, EAC with microbial inoculation (AMI-EAC) increased the degradation of cellulose, hemicellulose, and lignin. Furthermore, AMI-EAC improved the humification index by 42.89 % relative to EAC. AMI-EAC also increased the relative abundance of Bacillus, enriched thermophilic and electroactive microorganisms, and enhanced the activity of associated degradative enzymes, which promoted the decomposition and humification of organic matter. Partial least squares-path model analysis showed that Bacillus inoculation during AMI-EAC enhanced the direct positive effect of microorganisms on enzyme activity and strengthened the positive impacts of substance degradation and enzyme activity on compost maturation. This study provided new insights for inoculating microbial agents to enhance composting efficiency in future engineering applications of EAC.

Enhancing composting efficiency of horticultural residues through wheat straw addition: Microbial mechanisms driving metabolic heat generation

Sustainable thermal energy can be obtained through crop waste composting, enhancing the application potential of biomass resources. Microbial metabolic heat generation mechanisms during lignocellulose degradation in mixed straw composting were investigated. Four treatments representing different raw material compositions [T1 (Horticultural Residues, HR), T2 (HR + Cow Manure, CM), T3 (Wheat Straw, WS + HR), T4 (WS + CM)] were applied and composted for 36 days. WS addition helped HR composting (T3) prolong thermophilic phase by 49.5 %, achieving 13.0 MJ/kg metabolic heat release and 61.3% organic matter degradation, demonstrating its energy recovery potential. Key microbial taxa, including Pseudoxanthomonas, Thermopolyspora, Chelativorans and Thermobacillus were enriched in thermophilic stage, contributing to lignocellulose degradation through metabolic pathways such as TCA cycle and pentose phosphate pathway. Redundancy analysis showed that high temperature, C/N and pH favored enrichment of dominant microbial communities, accelerating lignocellulosic bio-conversion to metabolites [e.g., D-(+)-maltose and D-ribulose-5-phosphate]. Partial least squares structural equation model confirmed environmental factors, bacterial communities and metabolic activity as key drivers of heat production, and revealed regulation pattern on composting heat production. The findings offer insights into optimizing bio-conversion processes for high-quality energy recovery from HR.

Combining citrus waste-derived function microbes with biochar promotes humus formation by enhancing lignocellulose degradation in citrus waste compost

The low degradation rate of lignocellulose limits the humification process of citrus organic waste composting. This study explored the roles of general microbial inoculation (GM), citrus waste-derived function microbial inoculation (CM), and CM combined with biochar (CMB) in citrus waste compost. Results showed microbial inoculations all promoted lignocellulose degradation and humus formation, but the roles of CM and CMB were better than GM, especially CMB. Compared to the control, CMB raised the temperature and duration of thermophilic phase by 2.8 °C and 4 days, and improved lignin degradation rate and humus content by 21.5% and 7.6%. Furthermore, CMB promoted bacterial community succession and cooperation, and decreased network complexity. Moreover, CMB strengthened the correlation between mainly bacterial communities and polysaccharides, reducing sugars as well as carbohydrates metabolic, enhancing the contribution of bacteria such as Bacillus, Flavobacterium and Staphylococcus to humus and its precursors. It concludes that the naturally derived microbes in compost had better effects on promoting humus synthesis than exogenous microbes, which provides a new route for rapid humification of high-lignin organic waste in composting.

Response of humification process to fungal inoculant in corn straw composting with two different kinds of nitrogen sources

Inoculation is widely used in composting to improve the mineralization process, however, the link of fungal inoculant to humification is rarely proposed. The objective of this study was to investigate the effect of compound fungal inoculation on humification process and fungal community dynamics in corn straw composting with two different kinds of nitrogen sources [pig manure (PM) and urea (UR)]. Structural equation modeling and random forest analysis were conducted to identify key fungi and explore the fungi-mediated humification mechanism. Results showed that fungal inoculation increased the content of humic acids in PM and UR by 71.76 % and 53.01 % compared to control, respectively. High-throughput sequencing indicated that there were more key fungal genera for lignin degradation in PM especially in the later stage of composting, but a more complex fungal (genera) connections with lower humification degree was found in UR. Network analysis and random forest suggested that inoculation promoted dominant genus such as Coprinus, affecting lignocellulose degradation. Structural equation modeling indicated that fungal inoculation could promote humification by direct pathway based on lignin degradation and indirect pathway based on stimulating the indigenous microbes such as Scedosporiu and Coprinus for the accumulation of carboxyl and polyphenol hydroxyl groups. In summary, fungal inoculation is suitable to be used combining with complex nitrogen source such as pig manure in straw composting.

Endophytic microbial diversity associated with commercial cultivar and crop wild relative banana variety could provide clues for microbial community management

Endophytes, microorganisms inhabiting internal plant tissues, play a pivotal role in plant growth and disease resistance. Moreover, previous studies have established that Musa plants derive disease protective functions from their microbiome. Notably, one of the crop wild relatives of banana, the Calcutta 4 variety, exhibits resistance to various phytopathogens such as Pseudocercospora fijiensis (P. fijiensis), while the Williams commercial cultivar (cv.) is highly susceptible. Therefore, this study aims primarily to characterize and compare the endophytic microbiota composition of Calcutta 4 and Williams banana plants when grown sympatrically. Alongside, differences in endophytic microbiome between plant sections (shoot or roots), growth phases (in vitro or greenhouse) and fitness factors such as the addition of plant growth-promoting bacteria Bacillus subtilis EA-CB0575 (T2 treatment) or infection by P. fijiensis (T3 treatment) were examined. Both culture-dependent and -independent techniques were used to evaluate these differences and assess the culturability of banana endophytes under varying conditions. Microbial cultures resulted in 331 isolates distributed across 54 genera when all treatments were evaluated, whereas 16 S sequencing produced 9510 ASVs assigned in 1456 genera. Alpha and beta diversity exhibited significant differences based on plant section, with an increase in phylogenetic diversity observed in plants with pathogen infection (T3) compared to control plants (T1). Additionally, four differentially abundant genera associated with nitrogen metabolism were identified in T3 plants and seven genera showed differential abundance when comparing varieties. When culture-dependent and -independent methods were compared, it was found that isolates represented 3.7 % of the genera detected by culture-independent methods, accounting for 12-41 % of the total data depending on the treatment. These results are crucial for proposing management strategies derived from crop wild relatives to enhance the resilience of susceptible commercial varieties against fitness factors affecting crop development. Additionally, they help to decipher the pathogenic effects of P. fijiensis in banana plants and advance the understanding of how plant domestication influences the endosphere.

Insight into farming native microbiome by bioinoculant in soil-plant system

Applying beneficial microorganisms (BM) as bioinoculants presents a promising soil-amendment strategy while impacting the native microbiome, which jointly alters soil-plant performance. Leveraging the untapped potential of native microbiomes alongside bioinoculants may enable farmers to sustainably regulate soil-plant systems via natural bioresources. This review synthesizes literature on native microbiome responses to BMs and their interactive effects on soil and plant performance. We highlight that native microbiomes harbor both microbial "helpers" that can improve soil fertility and plant productivity, as well as "inhibitors" that hinder these benefits. To harness the full potential of resident microbiome, it is crucial to elucidate their intricate synergistic and antagonistic interplays with introduced BMs and clarify the conditions that facilitate durable BM-microbiome synergies. Hence, we indicate current challenges in predicting these complex microbial interactions and propose corresponding strategies for microbiome breeding via BM bioinoculant. Overall, fully realizing the potential of BMs requires clarifying their interactions with native soil microbiomes and judiciously engineering microbiome to harness helpful microbes already present within agroecosystems.

Effects of crayfish shell powder and bamboo-derived biochar on nitrogen conversion, bacterial community and nitrogen functional genes during pig manure composting

This study investigated the effects of crayfish shell powder (CSP) and bamboo-derived biochar (BDB) on nitrogen metabolism, bacterial community and nitrogen functional genes during pig manure composting. Four treatments were established: CP (with no additives), TP1 (5 % BDB), TP2 (5 % CSP) and TP3 (2.5 % BDB + 2.5 % CSP). Compared to CP, the germination index (GI) of TP reached > 85 % 10 days earlier. Meanwhile, TP3 reduced NH3 and N2O emissions by 42.90 % and 65.9 %, respectively, while increased TN (total nitrogen) concentration by 5.43 g/kg. Furthermore, additives changed the bacterial structure and formed a beneficial symbiotic relationship with essential N-preserving bacteria, thereby enhancing nitrogen retention throughout the composting process. Metagenomic analysis revealed that additives upregulated nitrification genes and downregulated denitrification and nitrate reduction genes, ultimately improving nitrogen cycling and mitigating NH3 and N2O emissions. In conclusion, the results confirmed that TP3 was the most effective treatment in reducing nitrogen loss.

Enhancing C and N turnover, functional bacteria abundance, and the efficiency of biowaste conversion using Streptomyces-Bacillus inoculation

Microbial inoculation plays a significant role in promoting the efficiency of biowaste conversion. This study investigates the function of Streptomyces-Bacillus Inoculants (SBI) on carbon (C) and nitrogen (N) conversion, and microbial dynamics, during cow manure (10% and 20% addition) and corn straw co-composting. Compared to inoculant-free controls, inoculant application accelerated the compost's thermophilic stage (8 vs 15 days), and significantly increased compost total N contents (+47%) and N-reductase activities (nitrate reductase: +60%; nitrite reductase: +219%). Both bacterial and fungal community succession were significantly affected by DOC, urease, and NH4+-N, while the fungal community was also significantly affected by cellulase. The contribution rate of Cupriavidus to the physicochemical factors of compost was as high as 83.40%, but by contrast there were no significantly different contributions (∼60%) among the top 20 fungal genera. Application of SBI induced significant correlations between bacteria, compost C/N ratio, and catalase enzymes, indicative of compost maturation. We recommend SBI as a promising bio-composting additive to accelerate C and N turnover and high-quality biowaste maturation. SBI boosts organic cycling by transforming biowastes into bio-fertilizers efficiently. This highlights the potential for SBI application to improve plant growth and soil quality in multiple contexts.

The co-inoculation of Trichoderma viridis and Bacillus subtilis improved the aerobic composting efficiency and degradation of lignocellulose

The aim of this study was to reveal the mechanism by which co-inoculation with both Trichoderma viridis and Bacillus subtilis improved the efficiency of composting and degradation of lignocellulose in agricultural waste. The results showed that co-inoculation with Trichoderma and Bacillus increased abundance of Bacteroidota to promote the maturation 7 days in advance. Galbibacter may be a potential marker of co-inoculation composting efficiency compost. The compost became dark brown, odorless, and had a carbon to nitrogen ratio of 16.40 and a pH of 8.2. Moreover, Actinobacteriota and Firmicutes still dominated the degradation of lignocellulose following inoculation with Trichoderma or Bacillus 35 days after composting. Bacterial function prediction analysis showed that carbohydrate metabolism was the primary metabolic pathway. In conclusion, co-inoculation with Trichoderma and Bacillus shortened the composting cycle and accelerated the degradation of lignocellulose. These findings provide new strategies for the efficient use of agricultural waste to produce organic fertilizers.