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Abedi R, Raoof JB, Bagheri Hashkavayi A, Jalayeri Darbandi Z, Abedi P, Barati Darband G. Innovations in aptamer-based biosensors for detection of pathogenic bacteria: Recent advances and perspective. Talanta 2025; 295:128330. [PMID: 40388877 DOI: 10.1016/j.talanta.2025.128330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2025] [Revised: 05/10/2025] [Accepted: 05/13/2025] [Indexed: 05/21/2025]
Abstract
The rapid and accurate detection of pathogenic bacteria is a pressing concern in the fields of public health, food safety, and environmental monitoring. However, traditional methods often prove to be slow and difficult to quantify accurately. Thus, there is a pressing need to develop advanced methods that enable rapid detection which is sensitive and inexpensive. Aptamers, which are short nucleic acid sequences derived through a process called systematic evolution of ligands by exponential enrichment (SELEX), offer a promising alternative due to their unique binding characteristics. These properties confer several advantages over traditional antibodies, making aptamers effective and versatile bioreceptors for pathogen detection. Recent advancements have led to the development of various aptamer-based biosensors utilizing diverse signaling strategies, including optical, electrochemical, mass-based, paper-based and microchip capillary electrophoresis (MCE) methods. The integration of nanomaterials with aptamer technology has further enhanced biosensor performance by improving sensitivity and enabling real-time monitoring of bacterial contamination. In this review, the focus is on current developments in aptamer-based biosensors and their potential applications in clinical diagnostics, food safety and environmental monitoring. As research progresses, the customization of aptamer sequences for specific targets is expected to yield tailored diagnostic solutions, ultimately improving patient outcomes and public health responses. The continued exploration of aptamer technology marks a significant advancement in methodologies for detecting pathogenic bacteria, highlighting not only the promise of aptamers as effective detection tools but also the critical need for multidisciplinary collaboration, integrating molecular biology, materials science, and microfluidics, to overcome challenges in this field.
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Affiliation(s)
- Rokhsareh Abedi
- Materials and Metallurgical Engineering Department, Faculty of Engineering, Ferdowsi University of Mashhad, Mashhad, 91775-1111, Iran
| | - Jahan Bakhsh Raoof
- Electroanalytical Chemistry Research Laboratory, Department of Analytical Chemistry, Faculty of Chemistry, University of Mazandaran, Babolsar, Iran
| | - Ayemeh Bagheri Hashkavayi
- Department of Applied Physical Sciences, University of North Carolina- Chapel Hill, 1112 Murray Hall, CB#3050, Chapel Hill, NC, 27599-2100, USA
| | - Zahra Jalayeri Darbandi
- Tissue Engineering Research Group (TERG), Department of Anatomy and Cell Biology, School of Medicine, Mashhad University of Medical Sciences, Mashhad, 917794-8564, Iran
| | - Pouria Abedi
- Department of Medical Laboratory Sciences, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Ghasem Barati Darband
- Materials and Metallurgical Engineering Department, Faculty of Engineering, Ferdowsi University of Mashhad, Mashhad, 91775-1111, Iran.
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Gong W, Wu X, Ren D, Feng X, Wang S, Zhang Y, Li Y, Tian M, Li Y, Liu Q. Porphyrin-Based Metal-Organic Frameworks for PD-L1 Detection via "Coordination Disaggregation-Induced Enhancement" Strategy. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2025; 41:6894-6902. [PMID: 40059345 DOI: 10.1021/acs.langmuir.4c05144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/19/2025]
Abstract
Porphyrins, known for their exceptional photoelectrochemical properties and high luminescence, are promising candidates for electrochemiluminescence (ECL) applications. However, their tendency to aggregate in aqueous solutions due to π-π stacking leads to luminescence quenching and reduced efficiency. To address this, we developed a "coordination disaggregation-induced enhancement" strategy, utilizing metal-organic frameworks (MOFs) as stable platforms for immobilizing porphyrin. These porphyrin-based MOFs not only increase the loading of luminescent groups and suppress the aggregation-caused quenching (ACQ) effect but also enhance electron transfer via uniform dispersion of pyrrole N in the porphyrin ligand, thereby improving ECL intensity. Additionally, they exhibit favorable biocompatibility and low toxicity, making them suitable for biomedical applications. By combining porphyrin-based MOFs as donors with PDA@MnO2 composites as quenchers, we constructed a quenching-type ECL immunosensor for detecting programmed death ligand 1 (PD-L1). This sensor achieves a detection range of 10 fg/mL to 100 ng/mL, with a limit of detection as low as 2.48 fg/mL, which demonstrates great potential for highly sensitive biomarker detection and promising applications in early cancer diagnosis and other medical diagnostics.
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Affiliation(s)
- Weiming Gong
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo 255049, People's Republic of China
| | - Xiaoran Wu
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo 255049, People's Republic of China
| | - Dan Ren
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo 255049, People's Republic of China
| | - Xinyi Feng
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo 255049, People's Republic of China
| | - Shujun Wang
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo 255049, People's Republic of China
| | - Yue Zhang
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo 255049, People's Republic of China
| | - Yueyuan Li
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo 255049, People's Republic of China
| | - Maojin Tian
- Department of Critical Care Medicine, Zibo Central Hospital Affiliated to Binzhou Medical University, Zibo, Shandong 255036, China
| | - Yueyun Li
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo 255049, People's Republic of China
| | - Qing Liu
- School of Chemistry and Chemical Engineering, Shandong University of Technology, Zibo 255049, People's Republic of China
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Liu S, Dong N, Meng S, Li Y, Li Y, Wang S, Liu D, You T. Operando Photoelectrochemical Surface-Enhanced Raman Spectroscopy: Interfacial Mechanistic Insights and Simultaneous Detection of Patulin. Anal Chem 2025; 97:1329-1337. [PMID: 39778704 DOI: 10.1021/acs.analchem.4c05669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2025]
Abstract
Comprehending the biosensing mechanism of the biosensor interface is crucial for sensor development, yet accurately reflecting interfacial interactions within actual detection environments remains an unsolved challenge. An operando photoelectrochemical surface-enhanced Raman spectroscopy (PEC-SERS) biosensing platform was developed, capable of simultaneously capturing photocurrent and SERS signals, allowing operando characterization of the interfacial biosensing behavior. Porphyrin-based MOFs (Zr-MOF) served as bifunctional nanotags, providing a photocurrent and stable Raman signal output under 532 nm laser irradiation. Aptamer was used to bridge the Zr-MOF and the silver-encased gold nanodumbbells (AuNDs@AgNPs). The simultaneous in situ acquisition of target-induced PEC and SERS signal responses facilitated the correlation of electron transfer information from the photocurrent with the distance information from the SERS signal. It revealed the biosensing mechanism in which target-induced aptamer conformational bending drove the Zr-MOF to approach the electrode. However, the increase in charge transfer observed through conventional electrochemical methods contradicts the conclusions drawn from the operando PEC-SERS analysis. Comprehensive analysis indicated that redox probes introduced during the non-in-situ measurement process became adsorbed within the MOF pores, potentially affecting the judgment of the biosensing mechanism. In addition, the operando PEC-SERS biosensor simultaneously obtained two independent signals, providing self-verification to improve the accuracy and reliability of patulin detection. The linear ranges were 1 pg mL-1-10 ng mL-1 for the PEC method and 1 pg mL-1-100 ng mL-1 for the SERS method, respectively. This work provides a powerful tool for determining the interface characteristics of biosensors.
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Affiliation(s)
- Shuda Liu
- Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Na Dong
- Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Shuyun Meng
- Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Yuye Li
- Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Yuqing Li
- Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Siyuan Wang
- Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Dong Liu
- Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
| | - Tianyan You
- Laboratory of Modern Agricultural Equipment and Technology, Ministry of Education, School of Agricultural Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
- College of Agricultural Equipment Engineering, Henan University of Science and Technology, Luoyang, Henan 471003, China
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Dong Y, Wang W, Guo C, Wang J, Li D, Ye C. Multipath collaboration-based signal amplification on Z-scheme In 2O 3/g-C 3N 4 heterojunction photoelectrode for sensitive photoelectrochemical immunoassay. Talanta 2025; 281:126935. [PMID: 39332047 DOI: 10.1016/j.talanta.2024.126935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Revised: 09/11/2024] [Accepted: 09/22/2024] [Indexed: 09/29/2024]
Abstract
The ideal photoelectrode and efficient signaling strategy are pivotal to achieve sensitive photoelectrochemical (PEC) analysis. Here, a multipath collaborative signal amplification-based PEC immunosensor was constructed for the ultrasensitive detection of cytokeratin 19 fragment 21-1. Specifically, the photoelectrode fabricated by Z-scheme In2O3/g-C3N4 heterojunction showed enhanced photocurrent intensity in response to visible light. Meanwhile, the signal probe, horseradish peroxidase functionalized dopamine-melanin nanosphere@Au nanoparticles (HRP-Dpa-melanin NS@AuNPs), were introduced into the system. When the target exists, the signal probe can induce multiple quenching of the photocurrent due to the competition of light absorption, steric hindrance and HRP-mediated biocatalytic precipitation, which effectively inhibit light, electron donor, and electron access to the photoelectrode. The fabricated immunosensor exhibits a wide linear range from 1.0 × 10-3 - 1.0 × 102 ng mL-1 with the detection limit of 0.35 pg mL-1 (S/N = 3) for cytokeratin 19 fragment 21-1 detection. The study enhances sensitivity for PEC detection by utilizing the superior Z-scheme heterojunction photoelectrode, providing a valuable method that combines multiple signal pathways for a synergistic effect in bioanalysis.
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Affiliation(s)
- Yuxiang Dong
- School of Materials Science and Engineering, Suzhou University of Science and Technology, Suzhou, 215009, PR China
| | - Weisa Wang
- School of Materials Science and Engineering, Suzhou University of Science and Technology, Suzhou, 215009, PR China
| | - Cheng Guo
- School of Materials Science and Engineering, Suzhou University of Science and Technology, Suzhou, 215009, PR China
| | - Jialin Wang
- School of Materials Science and Engineering, Suzhou University of Science and Technology, Suzhou, 215009, PR China
| | - Dan Li
- Naval Medical Center, Shanghai, 200050, PR China
| | - Changqing Ye
- School of Materials Science and Engineering, Suzhou University of Science and Technology, Suzhou, 215009, PR China.
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Li X, Chen G, Li Y, Wang Y, Huang W, Lai G. Multiplex Signal Transduction and Output at Single Recognition Interface of Multiplexed Photoelectrochemical Sensors. Anal Chem 2024; 96:8147-8159. [PMID: 38568863 DOI: 10.1021/acs.analchem.3c05475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2024]
Affiliation(s)
- Xin Li
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, College of Chemistry and Chemical Engineering, Hubei Normal University, Huangshi 435002, P. R. China
| | - Guixiang Chen
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, College of Chemistry and Chemical Engineering, Hubei Normal University, Huangshi 435002, P. R. China
| | - Yishuang Li
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, College of Chemistry and Chemical Engineering, Hubei Normal University, Huangshi 435002, P. R. China
| | - Yuxin Wang
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, College of Chemistry and Chemical Engineering, Hubei Normal University, Huangshi 435002, P. R. China
| | - Wan Huang
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, College of Chemistry and Chemical Engineering, Hubei Normal University, Huangshi 435002, P. R. China
| | - Guosong Lai
- Hubei Key Laboratory of Pollutant Analysis & Reuse Technology, College of Chemistry and Chemical Engineering, Hubei Normal University, Huangshi 435002, P. R. China
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