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Qiao S, Zheng X, Ou Y, Li T, Zhao X, Quan J, Zhao X, Li Q. Highly efficient GPCR immobilization with enhanced fouling resistance, salt tolerance, and chromatographic performance. Colloids Surf B Biointerfaces 2024; 236:113818. [PMID: 38417347 DOI: 10.1016/j.colsurfb.2024.113818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 01/29/2024] [Accepted: 02/20/2024] [Indexed: 03/01/2024]
Abstract
The feasibility of immobilized protein-based biodetection relies critically on the activity of the immobilized proteins as well as the biocompatibility of the protein surface. Although many protein immobilization strategies have been developed with satisfied detection readout signals. Non-specific interactions caused by the protein-coating surface are still of great concern since they often interfere with or affect the reliability of detection. Herein, we developed a highly efficient G protein-coupled receptor (GPCR) immobilization method by the combination of polyethylene glycol (PEG) with a self-labeling enzyme-catalyzed reaction. The immobilization relies on the covalent interaction between the fusion tag of a target GPCR (kinase domain of epidermal growth factor receptor, EGFR) and its covalent inhibitor ibrutinib, which is modified on PEGylated silica gels. Two types of GPCRs, N-methyl-D-aspartate 2 A receptor (NMDAR2A) and endothelin A receptor (ETAR), were used as examples to realize protein immobilization. The GPCR modified gels and the affinity columns packed with them have been extensively characterized, in terms of non-specific adsorptions, retention factor (k'), half peak width (W1/2), tailing factor (Tf), theoretical plates (N), and association and dissociation constants of the ligands with the receptors. The immobilized GPCRs with reduced non-specific interactions and enhanced fouling resistance, salt tolerance, and chromatographic performance were clearly observed. We believe it is the first work to introduce PEGylation in GPCR immobilization and provide comprehensive proof-of-concept studies to illustrate the improved antifouling property, salt tolerance, and chromatographic performance. This method could be generally applicable in other immobilized protein-based technology for reliable biodetection.
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Affiliation(s)
- Sai Qiao
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an 710069, China
| | - Xinxin Zheng
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an 710069, China
| | - Yuanyuan Ou
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an 710069, China
| | - Ting Li
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an 710069, China
| | - Xue Zhao
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an 710069, China
| | - Jia Quan
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an 710069, China
| | - Xinfeng Zhao
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an 710069, China
| | - Qian Li
- Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an 710069, China.
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2
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Liu Y, Zhang N, Ma J, Zhou Y, Wei Q, Tian C, Fang Y, Zhong R, Chen G, Zhang S. Advances in cold-adapted enzymes derived from microorganisms. Front Microbiol 2023; 14:1152847. [PMID: 37180232 PMCID: PMC10169661 DOI: 10.3389/fmicb.2023.1152847] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2023] [Accepted: 04/06/2023] [Indexed: 05/16/2023] Open
Abstract
Cold-adapted enzymes, produced in cold-adapted organisms, are a class of enzyme with catalytic activity at low temperatures, high temperature sensitivity, and the ability to adapt to cold stimulation. These enzymes are largely derived from animals, plants, and microorganisms in polar areas, mountains, and the deep sea. With the rapid development of modern biotechnology, cold-adapted enzymes have been implemented in human and other animal food production, the protection and restoration of environments, and fundamental biological research, among other areas. Cold-adapted enzymes derived from microorganisms have attracted much attention because of their short production cycles, high yield, and simple separation and purification, compared with cold-adapted enzymes derived from plants and animals. In this review we discuss various types of cold-adapted enzyme from cold-adapted microorganisms, along with associated applications, catalytic mechanisms, and molecular modification methods, to establish foundation for the theoretical research and application of cold-adapted enzymes.
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Affiliation(s)
- Yehui Liu
- College of Life Science, Jilin Agricultural University, Changchun, China
- Key Laboratory of Straw Comprehensive Utilization and Black Soil Conservation, Ministry of Education, Changchun, China
| | - Na Zhang
- College of Life Science, Jilin Agricultural University, Changchun, China
- Key Laboratory of Straw Comprehensive Utilization and Black Soil Conservation, Ministry of Education, Changchun, China
| | - Jie Ma
- College of Life Science, Jilin Agricultural University, Changchun, China
- Key Laboratory of Straw Comprehensive Utilization and Black Soil Conservation, Ministry of Education, Changchun, China
| | - Yuqi Zhou
- College of Life Science, Jilin Agricultural University, Changchun, China
- Key Laboratory of Straw Comprehensive Utilization and Black Soil Conservation, Ministry of Education, Changchun, China
| | - Qiang Wei
- College of Life Science, Jilin Agricultural University, Changchun, China
- Key Laboratory of Straw Comprehensive Utilization and Black Soil Conservation, Ministry of Education, Changchun, China
| | - Chunjie Tian
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Yi Fang
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Rongzhen Zhong
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Guang Chen
- College of Life Science, Jilin Agricultural University, Changchun, China
- Key Laboratory of Straw Comprehensive Utilization and Black Soil Conservation, Ministry of Education, Changchun, China
| | - Sitong Zhang
- College of Life Science, Jilin Agricultural University, Changchun, China
- Key Laboratory of Straw Comprehensive Utilization and Black Soil Conservation, Ministry of Education, Changchun, China
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
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3
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Ó'Fágáin C. Protein Stability: Enhancement and Measurement. Methods Mol Biol 2023; 2699:369-419. [PMID: 37647007 DOI: 10.1007/978-1-0716-3362-5_18] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Abstract
This chapter defines protein stability, emphasizes its importance, and surveys the field of protein stabilization, with summary reference to a selection of 2014-2021 publications. One can enhance stability, particularly by protein engineering strategies but also by chemical modification and by other means. General protocols are set out on how to measure a given protein's (i) kinetic thermal stability and (ii) oxidative stability and (iii) how to undertake chemical modification of a protein in solution.
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Affiliation(s)
- Ciarán Ó'Fágáin
- School of Biotechnology, Dublin City University, Dublin, Ireland.
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4
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Yao Q, Chen J, Li X, Yang W, Ning J, Liang Q, Li Q. Site-selective covalent immobilization of PPARγ using a label-free strategy for chromatographic study. Microchem J 2022. [DOI: 10.1016/j.microc.2022.108278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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5
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Araújo R, González-González RB, Martinez-Ruiz M, Coronado-Apodaca KG, Reyes-Pardo H, Morreeuw ZP, Oyervides-Muñoz MA, Sosa-Hernández JE, Barceló D, Parra-Saldívar R, Iqbal HM. Expanding the Scope of Nanobiocatalysis and Nanosensing: Applications of Nanomaterial Constructs. ACS OMEGA 2022; 7:32863-32876. [PMID: 36157779 PMCID: PMC9494649 DOI: 10.1021/acsomega.2c03155] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Accepted: 08/29/2022] [Indexed: 05/25/2023]
Abstract
The synergistic interaction between advanced biotechnology and nanotechnology has allowed the development of innovative nanomaterials. Those nanomaterials can conveniently act as supports for enzymes to be employed as nanobiocatalysts and nanosensing constructs. These systems generate a great capacity to improve the biocatalytic potential of enzymes by improving their stability, efficiency, and product yield, as well as facilitating their purification and reuse for various bioprocessing operating cycles. The different specific physicochemical characteristics and the supramolecular nature of the nanocarriers obtained from different economical and abundant sources have allowed the continuous development of functional nanostructures for different industries such as food and agriculture. The remarkable biotechnological potential of nanobiocatalysts and nanosensors has generated applied research and use in different areas such as biofuels, medical diagnosis, medical therapies, environmental bioremediation, and the food industry. The objective of this work is to present the different manufacturing strategies of nanomaterials with various advantages in biocatalysis and nanosensing of various compounds in the industry, providing great benefits to society and the environment.
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Affiliation(s)
- Rafael
G. Araújo
- Tecnologico
de Monterrey, School of Engineering
and Sciences, Monterrey 64849, Mexico
- Tecnologico
de Monterrey, Institute of Advanced Materials
for Sustainable Manufacturing, Monterrey 64849, Mexico
| | - Reyna Berenice González-González
- Tecnologico
de Monterrey, School of Engineering
and Sciences, Monterrey 64849, Mexico
- Tecnologico
de Monterrey, Institute of Advanced Materials
for Sustainable Manufacturing, Monterrey 64849, Mexico
| | - Manuel Martinez-Ruiz
- Tecnologico
de Monterrey, School of Engineering
and Sciences, Monterrey 64849, Mexico
- Tecnologico
de Monterrey, Institute of Advanced Materials
for Sustainable Manufacturing, Monterrey 64849, Mexico
| | - Karina G. Coronado-Apodaca
- Tecnologico
de Monterrey, School of Engineering
and Sciences, Monterrey 64849, Mexico
- Tecnologico
de Monterrey, Institute of Advanced Materials
for Sustainable Manufacturing, Monterrey 64849, Mexico
| | - Humberto Reyes-Pardo
- Tecnologico
de Monterrey, School of Engineering
and Sciences, Monterrey 64849, Mexico
| | - Zoé P. Morreeuw
- Tecnologico
de Monterrey, School of Engineering
and Sciences, Monterrey 64849, Mexico
| | - Mariel Araceli Oyervides-Muñoz
- Tecnologico
de Monterrey, School of Engineering
and Sciences, Monterrey 64849, Mexico
- Tecnologico
de Monterrey, Institute of Advanced Materials
for Sustainable Manufacturing, Monterrey 64849, Mexico
| | - Juan Eduardo Sosa-Hernández
- Tecnologico
de Monterrey, School of Engineering
and Sciences, Monterrey 64849, Mexico
- Tecnologico
de Monterrey, Institute of Advanced Materials
for Sustainable Manufacturing, Monterrey 64849, Mexico
| | - Damià Barceló
- Department
of Environmental Chemistry, Institute of
Environmental Assessment and Water Research, IDAEA-CSIC, Jordi Girona, 18-26, 08034 Barcelona, Spain
- Catalan
Institute for Water Research (ICRA-CERCA), Parc Científic i Tecnològic de la Universitat de Girona, c/Emili Grahit, 101, Edifici H2O, 17003 Girona, Spain
- Sustainability
Cluster, School of Engineering, UPES, 248007 Dehradun, India
| | - Roberto Parra-Saldívar
- Tecnologico
de Monterrey, School of Engineering
and Sciences, Monterrey 64849, Mexico
- Tecnologico
de Monterrey, Institute of Advanced Materials
for Sustainable Manufacturing, Monterrey 64849, Mexico
| | - Hafiz M.N. Iqbal
- Tecnologico
de Monterrey, School of Engineering
and Sciences, Monterrey 64849, Mexico
- Tecnologico
de Monterrey, Institute of Advanced Materials
for Sustainable Manufacturing, Monterrey 64849, Mexico
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6
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Evaluating Enzymatic Productivity—The Missing Link to Enzyme Utility. Int J Mol Sci 2022; 23:ijms23136908. [PMID: 35805910 PMCID: PMC9266678 DOI: 10.3390/ijms23136908] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Revised: 06/19/2022] [Accepted: 06/20/2022] [Indexed: 01/07/2023] Open
Abstract
Kinetic productivity analysis is critical to the characterization of enzyme catalytic performance and capacity. However, productivity analysis has been largely overlooked in the published literature. Less than 0.01% of studies which report on enzyme characterization present productivity analysis, despite the fact that this is the only measurement method that provides a reliable indicator of potential commercial utility. Here, we argue that reporting productivity data involving native, modified, and immobilized enzymes under different reaction conditions will be of immense value in optimizing enzymatic processes, with a view to accelerating biotechnological applications. With the use of examples from wide-ranging studies, we demonstrate that productivity is a measure of critical importance to the translational and commercial use of enzymes and processes that employ them. We conclude the review by suggesting steps to maximize the productivity of enzyme catalyzed reactions.
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7
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Immobilization Techniques on Bioprocesses: Current Applications Regarding Enzymes, Microorganisms, and Essential Oils. FOOD BIOPROCESS TECH 2022. [DOI: 10.1007/s11947-022-02780-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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8
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Nickel-Functionalized Chitosan for the Oriented Immobilization of Histidine-Tagged Enzymes: A Promising Support for Food Bioprocess Applications. Catal Letters 2022. [DOI: 10.1007/s10562-021-03912-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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9
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de Andrade BC, Gennari A, Renard G, Nervis BDR, Benvenutti EV, Costa TMH, Nicolodi S, da Silveira NP, Chies JM, Volpato G, Volken de Souza CF. Synthesis of magnetic nanoparticles functionalized with histidine and nickel to immobilize His-tagged enzymes using β-galactosidase as a model. Int J Biol Macromol 2021; 184:159-169. [PMID: 34126150 DOI: 10.1016/j.ijbiomac.2021.06.060] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Revised: 05/31/2021] [Accepted: 06/09/2021] [Indexed: 11/26/2022]
Abstract
The aim of this study was to synthesize iron magnetic nanoparticles functionalized with histidine and nickel (Fe3O4-His-Ni) to be used as support materials for oriented immobilization of His-tagged recombinant enzymes of high molecular weight, using β-galactosidase as a model. The texture, morphology, magnetism, thermal stability, pH and temperature reaction conditions, and the kinetic parameters of the biocatalyst obtained were assessed. In addition, the operational stability of the biocatalyst in the lactose hydrolysis of cheese whey and skim milk by batch processes was also assessed. The load of 600 Uenzyme/gsupport showed the highest recovered activity value (~50%). After the immobilization process, the recombinant β-galactosidase (HisGal) showed increased substrate affinity and greater thermal stability (~50×) compared to the free enzyme. The immobilized β-galactosidase was employed in batch processes for lactose hydrolysis of skim milk and cheese whey, resulting in hydrolysis rates higher than 50% after 15 cycles of reuse. The support used was obtained in the present study without modifying chemical agents. The support easily recovered from the reaction medium due to its magnetic characteristics. The iron nanoparticles functionalized with histidine and nickel were efficient in the oriented immobilization of the recombinant β-galactosidase, showing its potential application in other high-molecular-weight enzymes.
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Affiliation(s)
- Bruna Coelho de Andrade
- Food Biotechnology Laboratory, Biotechnology Graduate Program, University of Vale do Taquari - Univates, Lajeado, RS, Brazil
| | - Adriano Gennari
- Food Biotechnology Laboratory, Biotechnology Graduate Program, University of Vale do Taquari - Univates, Lajeado, RS, Brazil
| | - Gaby Renard
- National Institute of Science and Technology in Tuberculosis, Research Center for Molecular and Functional Biology, Pontifical Catholic University of Rio Grande do Sul, Porto Alegre, RS, Brazil
| | | | | | | | - Sabrina Nicolodi
- Institute of Physics, Federal University of Rio Grande do Sul, Porto Alegre, Brazil
| | | | | | - Giandra Volpato
- Biotechnology course, Federal Institute of Education, Science, and Technology of Rio Grande do Sul - IFRS, Porto Alegre Campus, Porto Alegre, RS, Brazil
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10
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Gkantzou E, Chatzikonstantinou AV, Fotiadou R, Giannakopoulou A, Patila M, Stamatis H. Trends in the development of innovative nanobiocatalysts and their application in biocatalytic transformations. Biotechnol Adv 2021; 51:107738. [PMID: 33775799 DOI: 10.1016/j.biotechadv.2021.107738] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Revised: 03/20/2021] [Accepted: 03/20/2021] [Indexed: 12/22/2022]
Abstract
The ever-growing demand for cost-effective and innocuous biocatalytic transformations has prompted the rational design and development of robust biocatalytic tools. Enzyme immobilization technology lies in the formation of cooperative interactions between the tailored surface of the support and the enzyme of choice, which result in the fabrication of tremendous biocatalytic tools with desirable properties, complying with the current demands even on an industrial level. Different nanoscale materials (organic, inorganic, and green) have attracted great attention as immobilization matrices for single or multi-enzymatic systems. Aiming to unveil the potentialities of nanobiocatalytic systems, we present distinct immobilization strategies and give a thorough insight into the effect of nanosupports specific properties on the biocatalysts' structure and catalytic performance. We also highlight the development of nanobiocatalysts for their incorporation in cascade enzymatic processes and various types of batch and continuous-flow reactor systems. Remarkable emphasis is given on the application of such nanobiocatalytic tools in several biocatalytic transformations including bioremediation processes, biofuel production, and synthesis of bioactive compounds and fine chemicals for the food and pharmaceutical industry.
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Affiliation(s)
- Elena Gkantzou
- Laboratory of Biotechnology, Department of Biological Applications and Technology, University of Ioannina, Ioannina, Greece
| | - Alexandra V Chatzikonstantinou
- Laboratory of Biotechnology, Department of Biological Applications and Technology, University of Ioannina, Ioannina, Greece
| | - Renia Fotiadou
- Laboratory of Biotechnology, Department of Biological Applications and Technology, University of Ioannina, Ioannina, Greece
| | - Archontoula Giannakopoulou
- Laboratory of Biotechnology, Department of Biological Applications and Technology, University of Ioannina, Ioannina, Greece
| | - Michaela Patila
- Laboratory of Biotechnology, Department of Biological Applications and Technology, University of Ioannina, Ioannina, Greece.
| | - Haralambos Stamatis
- Laboratory of Biotechnology, Department of Biological Applications and Technology, University of Ioannina, Ioannina, Greece.
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12
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Plant Fibers and Phenolics: A Review on Their Synthesis, Analysis and Combined Use for Biomaterials with New Properties. FIBERS 2019. [DOI: 10.3390/fib7090080] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Devising environmental-friendly processes in biotechnology is a priority in the current economic scenario. We are witnessing a constant and steady push towards finding sustainable solutions to societal challenges by promoting innovation-driven activities minimizing the environmental impact and valorizing natural resources. In bioeconomy, plants are among the most important renewable sources of both fibers (woody and cellulosic) and phytochemicals, which find applications in many industrial sectors, spanning from the textile, to the biocomposite, medical, nutraceutical, and pharma sectors. Given the key role of plants as natural sources of (macro)molecules, we here provide a compendium on the use of plant fibers functionalized/impregnated with phytochemicals (in particular phenolic extracts). The goal is to review the various applications of natural fibers functionalized with plant phenolics and to valorize those plants that are source of both fibers and phytochemicals.
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