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Ahi EP. Regulation of Skeletogenic Pathways by m6A RNA Modification: A Comprehensive Review. Calcif Tissue Int 2025; 116:58. [PMID: 40180675 PMCID: PMC11968561 DOI: 10.1007/s00223-025-01367-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/20/2025] [Accepted: 03/27/2025] [Indexed: 04/05/2025]
Abstract
In the complex process of skeletal development, the significance of m6A RNA methylation-a predominant form of RNA modification-has not been fully explored. This review discuss how m6A RNA methylation plays an important, though not yet fully understood, role in regulating skeletal formation. It examines how m6A influences key signaling pathways essential for skeletal development and homeostasis, suggesting various possible interactions between m6A methylation and these critical pathways. While the exact mechanisms for many of these interactions remain to be elucidated, m6A RNA methylation is anticipated to be a key emerging regulator in skeletal structure development across vertebrates. Highlighting the need for further research, this overview provides an in-depth look at the potential regulatory interactions of m6A RNA methylation within skeletal system. Uniquely, this review is the most comprehensive compilation of evidence linking components of m6A RNA methylation to signaling pathways involved in skeletogenesis.
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Affiliation(s)
- Ehsan Pashay Ahi
- Organismal and Evolutionary Biology Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikinkaari 9, 00014, Helsinki, Finland.
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Zhang Z, Hu H, Xu Z, Shan C, Chen H, Xie K, Wang K, Wang Y, Zhu Q, Yin Y, Cai H, Zhang Y, Li Z. A Chemically Defined Culture for Tooth Reconstitution. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025; 12:e2404345. [PMID: 39601338 PMCID: PMC11744639 DOI: 10.1002/advs.202404345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Revised: 11/10/2024] [Indexed: 11/29/2024]
Abstract
It is known for decades that dental epithelium and mesenchyme can reconstitute and regenerate a functional tooth. However, the mechanism of tooth reconstitution remains largely unknown due to the lack of an efficient in vitro model. Here, a chemically defined culture system is established that supports tooth reconstitution, further development with normal anatomy, and prompt response to chemical interference in key developmental signaling pathways, termed as toothoids. By using such a system, it is discovered that, during reconstitution, instead of resetting the developmental clock, dental cells reorganized and restarted from the respective developmental stage where they are originally isolated. Moreover, co-stimulation of Activin A and Hedgehog/Smoothened agonist (SAG) sustained the initial induction of tooth fate from the first branchial arch, which would be otherwise quickly lost in culture. Furthermore, activation of Bone Morphogenetic Protein (BMP) signaling triggered efficient enamel formation in the late-stage toothoids, without affecting the normal development of ameloblasts. Together, these data highlight the toothoid culture as a powerful tool to dissect the molecular mechanisms of tooth reconstitution and regeneration.
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Affiliation(s)
- Ziwei Zhang
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
| | - Hong Hu
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
| | - Zhiheng Xu
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
| | - Ce Shan
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
| | - Hanyi Chen
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
| | - Kun Xie
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
| | - Kun Wang
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
| | - Yifu Wang
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
| | - Qing Zhu
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
- Department of AnesthesiologyWest China Second University Hospital, Key Laboratory of Birth Defects and Related Diseases of Women and Children of Ministry of EducationSichuan UniversityNo. 20, Section 3, South Renmin RoadChengdu610041China
| | - Yike Yin
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
| | - Haoyang Cai
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
| | - Yunqiu Zhang
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
| | - Zhonghan Li
- Center of Growth Metabolism and AgingKey Laboratory of Bio‐Resource and Eco‐Environment of Ministry of EducationAnimal Disease Prevention and Food Safety Key Laboratory of Sichuan ProvinceCollege of Life SciencesSichuan University24 South Section 1, 1st Ring RoadChengdu610065China
- Department of AnesthesiologyWest China Second University Hospital, Key Laboratory of Birth Defects and Related Diseases of Women and Children of Ministry of EducationSichuan UniversityNo. 20, Section 3, South Renmin RoadChengdu610041China
- State Key Laboratory of Oral DiseaseWest China Hospital of StomatologySichuan UniversityNo. 14, Section 3, South Renmin RoadChengdu610041China
- Yunnan Key Laboratory of StomatologyDepartment of Pediatric DentistryThe Affiliated Stomatology Hospital of Kunming Medical UniversityKunming Medical UniversityNo. 1088, Mid‐Haiyuan RoadKunming650500China
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Miyakawa Y, Chiba-Ohkuma R, Karakida T, Yamamoto R, Kobayashi S, Yamakoshi Y, Asada Y. Response of TGF-β isoforms in epithelial-mesenchymal transition of enamel epithelial cells. Arch Oral Biol 2022; 143:105540. [PMID: 36087522 DOI: 10.1016/j.archoralbio.2022.105540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 08/31/2022] [Accepted: 09/01/2022] [Indexed: 11/02/2022]
Abstract
OBJECTIVE During enamel formation, transforming growth factor-beta (TGF-β) isoforms exhibit different activities for gene expression, apoptosis, and endocytosis. This study aimed to investigate the differential response of TGF-β isoforms to epithelial-mesenchymal transition (EMT) in enamel epithelial cells. DESIGN Using a mouse enamel epithelial cell line (mHAT9d) cultured in the presence of each TGF-β isoform, (1) the morphological changes in EMT were explored, (2) EMT-related genes were analyzed by next-generation sequencing (NGS), (3) TGF-β pathway for EMT was identified by inhibition experiments, and (4) the expression of the TGF-β receptor gene in response to the binding affinity of the TGF-β isoform were analyzed. RESULTS EMT was observed in mHAT9d cultured in the presence of TGF-β1 and β3 but not TGF-β2. The expression of both epithelial and mesenchymal marker genes was observed in mHAT9d exhibiting EMT. NGS analysis suggested extracellular signal-regulated kinase (ERK) and Rho pathways as TGF-β signaling pathways associated with EMT. However, EMT in mHAT9d cultured in the presence of TGF-β1 or β3 occurred even in presence of an ERK1/2 inhibitor and was suppressed by Rho-kinase inhibitor. The expression of co-receptors for TGF-β signaling in mHAT9d cells reduced following stimulation with each TGF-β isoform. In contrast, endoglin levels increased following TGF-β1 or β3 stimulation, but no change was noted in response to TGF-β2. CONCLUSIONS We propose that in TGF-β-stimulated enamel epithelial cells, EMT mainly occurred via the Rho signaling pathway, and the differences in response across TGF-β isoforms were due to their endoglin-mediated binding affinity for the TGF-β receptor.
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Affiliation(s)
- Yuri Miyakawa
- Department of Pediatric Dentistry, School of Dental Medicine, Tsurumi University, 2-1-3 Tsurumi, Tsurumi-ku, Yokohama 230-8501, Japan.
| | - Risako Chiba-Ohkuma
- Department of Biochemistry and Molecular Biology, School of Dental Medicine, Tsurumi University, 2-1-3 Tsurumi, Tsurumi-ku, Yokohama 230-8501, Japan.
| | - Takeo Karakida
- Department of Biochemistry and Molecular Biology, School of Dental Medicine, Tsurumi University, 2-1-3 Tsurumi, Tsurumi-ku, Yokohama 230-8501, Japan.
| | - Ryuji Yamamoto
- Department of Biochemistry and Molecular Biology, School of Dental Medicine, Tsurumi University, 2-1-3 Tsurumi, Tsurumi-ku, Yokohama 230-8501, Japan.
| | - Saeko Kobayashi
- Department of Pediatric Dentistry, School of Dental Medicine, Tsurumi University, 2-1-3 Tsurumi, Tsurumi-ku, Yokohama 230-8501, Japan.
| | - Yasuo Yamakoshi
- Department of Biochemistry and Molecular Biology, School of Dental Medicine, Tsurumi University, 2-1-3 Tsurumi, Tsurumi-ku, Yokohama 230-8501, Japan.
| | - Yoshinobu Asada
- Department of Pediatric Dentistry, School of Dental Medicine, Tsurumi University, 2-1-3 Tsurumi, Tsurumi-ku, Yokohama 230-8501, Japan.
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Inoue A, Kiyoshima T, Yoshizaki K, Nakatomi C, Nakatomi M, Ohshima H, Shin M, Gao J, Tsuru K, Okabe K, Nakamura I, Honda H, Matsuda M, Takahashi I, Jimi E. Deletion of epithelial cell-specific p130Cas impairs the maturation stage of amelogenesis. Bone 2022; 154:116210. [PMID: 34592494 DOI: 10.1016/j.bone.2021.116210] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Revised: 09/17/2021] [Accepted: 09/18/2021] [Indexed: 11/02/2022]
Abstract
Amelogenesis consists of secretory, transition, maturation, and post-maturation stages, and the morphological changes of ameloblasts at each stage are closely related to their function. p130 Crk-associated substrate (Cas) is a scaffold protein that modulates essential cellular processes, including cell adhesion, cytoskeletal changes, and polarization. The expression of p130Cas was observed from the secretory stage to the maturation stage in ameloblasts. Epithelial cell-specific p130Cas-deficient (p130CasΔepi-) mice exhibited enamel hypomineralization with chalk-like white mandibular incisors in young mice and attrition in aged mouse molars. A micro-computed tomography analysis and Vickers micro-hardness testing showed thinner enamel, lower enamel mineral density and hardness in p130CasΔepi- mice in comparison to p130Casflox/flox mice. Scanning electron microscopy, and an energy dispersive X-ray spectroscopy analysis indicated the disturbance of the enamel rod structure and lower Ca and P contents in p130CasΔepi- mice, respectively. The disorganized arrangement of ameloblasts, especially in the maturation stage, was observed in p130CasΔepi- mice. Furthermore, expression levels of enamel matrix proteins, such as amelogenin and ameloblastin in the secretory stage, and functional markers, such as alkaline phosphatase and iron accumulation, and Na+/Ca2++K+-exchanger in the maturation stage were reduced in p130CasΔepi- mice. These findings suggest that p130Cas plays important roles in amelogenesis (197 words).
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Affiliation(s)
- Akane Inoue
- Laboratory of Molecular and Cellular Biochemistry, Division of Oral Biological Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan; Section of Orthodontics and Dentofacial Orthopedics, Division of Oral Health, Growth and Development, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Tamotsu Kiyoshima
- Laboratory of Oral Pathology, Division of Maxillofacial Diagnostic and Surgical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Keigo Yoshizaki
- Section of Orthodontics and Dentofacial Orthopedics, Division of Oral Health, Growth and Development, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Chihiro Nakatomi
- Division of Physiology, Kyushu Dental University, 2-6-1 Manazuru, Kokurakita-ku, Kitakyushu 803-8580, Japan
| | - Mitsushiro Nakatomi
- Department of Human, Information and Life Sciences, School of Health Sciences, University of Occupational and Environmental Health, 1-1 Iseigaoka, Yahatanishi-ku, Kitakyushu 807-8555, Japan
| | - Hayato Ohshima
- Division of Anatomy and Cell Biology of the Hard Tissue, Department of Tissue Regeneration and Reconstruction, Niigata University Graduate School of Medical and Dental Sciences, 2-5274 Gakkocho-dori, Chuo-ku, Niigata 951-8514, Japan
| | - Masashi Shin
- Department of Physiological Sciences and Molecular Biology, Fukuoka Dental College, 2-5-1 Tamura, Sawara-ku, Fukuoka 814-0175, Japan; Oral Medicine Center, Fukuoka Dental College, 2-5-1 Tamura, Sawara-ku, Fukuoka 814-0175, Japan
| | - Jing Gao
- Laboratory of Molecular and Cellular Biochemistry, Division of Oral Biological Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Kanji Tsuru
- Section of Bioengineering, Fukuoka Dental College, 2-5-1 Tamura, Sawara-ku, Fukuoka 814-0175, Japan
| | - Koji Okabe
- Department of Physiological Sciences and Molecular Biology, Fukuoka Dental College, 2-5-1 Tamura, Sawara-ku, Fukuoka 814-0175, Japan
| | - Ichiro Nakamura
- Department of Rehabilitation, Yugawara Hospital, Japan Community Health Care Organization, 2-21-6 Chuo, Yugawara, Ashigara-shimo, Kanagawa 259-0396, Japan
| | - Hiroaki Honda
- Field of Human Disease Models, Major in Advanced Life Sciences and Medicine, Institute of Laboratory Animals, Tokyo Women's Medical University, 8-1 Kawada-cho, Shinjuku-ku, Tokyo 162-8666, Japan
| | - Miho Matsuda
- Laboratory of Molecular and Cellular Biochemistry, Division of Oral Biological Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Ichiro Takahashi
- Section of Orthodontics and Dentofacial Orthopedics, Division of Oral Health, Growth and Development, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
| | - Eijiro Jimi
- Laboratory of Molecular and Cellular Biochemistry, Division of Oral Biological Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan; Oral Health/Brain Health/Total Health Research Center, Faculty of Dental Science, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan.
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