1
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Cheng Y, Wang T, Zhu H, Hu X, Mi J, Li L, Zhang Y, Yang J, Dong L, Li Y, Sun W, Lu X, Wang W, Cao Y, Xue B. Molecular Engineering of Amino Acid Crystals with Enhanced Piezoelectric Performance for Biodegradable Sensors. Angew Chem Int Ed Engl 2025; 64:e202500334. [PMID: 39868665 DOI: 10.1002/anie.202500334] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2025] [Revised: 01/26/2025] [Accepted: 01/27/2025] [Indexed: 01/28/2025]
Abstract
Amino acid crystals have emerged as promising piezoelectric materials for biodegradable and biocompatible sensors; however, their relatively low piezoelectric coefficients constrain practical applications. Here, we introduce a fluoro-substitution strategy to overcome this limitation and enhance the piezoelectric performance of amino acid crystals. Specifically, we substituted hydrogen atoms on the aromatic rings of L-tryptophan, L-phenylalanine, and N-Cbz-L-phenylalanine with fluorine, resulting in significantly elevated piezoelectric coefficients. Density functional theory calculations further indicate that fluorination strengthens polarization by modifying molecular dipole moments. Consequently, these fluoro-substituted crystals achieve piezoelectric coefficients of up to 50.36 pm/V, surpassing those of other organic piezoelectric materials such as polyvinylidene fluoride (PVDF), poly(L-lactic acid) (PLLA), and gelatin. When integrated into flexible, biodegradable force sensors, the fluoro-substituted crystals exhibit a broad sensing range, high sensitivity, and stable in vivo operation over extended periods. This work establishes a versatile route for boosting piezoelectricity in biomaterials, thereby broadening their scope in biomedical applications.
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Affiliation(s)
- Yuanqi Cheng
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing, 210093, China
- Jinan Microecological Biomedicine Shandong Laboratory, Jinan, 250000, China
| | - Tianjian Wang
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing, 210093, China
| | - Haoqi Zhu
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing, 210093, China
| | - Xueli Hu
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing, 210093, China
| | - Jing Mi
- Department of Orthopedic Surgery, Nanjing Drum Tower Hospital, The Affiliated Hospital of Nanjing University Medical School, Nanjing, 210008, China
| | - Lan Li
- Department of Orthopedic Surgery, Nanjing Drum Tower Hospital, The Affiliated Hospital of Nanjing University Medical School, Nanjing, 210008, China
| | - Yu Zhang
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing, 210093, China
| | - Jiapeng Yang
- Jinan Microecological Biomedicine Shandong Laboratory, Jinan, 250000, China
| | - Liang Dong
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing, 210093, China
| | - Ying Li
- Institute of Advanced Materials and Flexible Electronics (IAMFE), School of Chemistry and Materials Science, Nanjing University of Information Science & Technology, Nanjing, 210044, China
| | - Wenxu Sun
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing, 210093, China
- School of Physics and Technology, Nantong University, Nantong, 226019, China
| | - Xiaomei Lu
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing, 210093, China
| | - Wei Wang
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing, 210093, China
- Institute for Brain Sciences, Nanjing University, Nanjing, 210093, China
| | - Yi Cao
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing, 210093, China
- Jinan Microecological Biomedicine Shandong Laboratory, Jinan, 250000, China
- Institute for Brain Sciences, Nanjing University, Nanjing, 210093, China
| | - Bin Xue
- Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing, 210093, China
- Jinan Microecological Biomedicine Shandong Laboratory, Jinan, 250000, China
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2
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Hu T, Lee JP, Huang P, Ong AJ, Yu J, Zhu S, Jiang Y, Zhang Z, Reches M, Lee PS. Promoting Piezoelectricity in Amino Acids by Fluorination. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2025; 37:e2413049. [PMID: 39551989 DOI: 10.1002/adma.202413049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2024] [Revised: 10/20/2024] [Indexed: 11/19/2024]
Abstract
Bioinspired piezoelectric amino acids and peptides are attracting attention due to their designable sequences, versatile structures, low cost, and biodegradability. However, it remains a challenge to design amino acids and peptides with high piezoelectricity. Herein, a high piezoelectric amino acid by simple fluorination in its side chain is presented. The three phenylalanine derivatives are designed: Cbz-Phe, Cbz-Phe(4F), and Cbz-pentafluoro-Phe. The effect of fluorination on self-assembly and piezoelectricity is investigated. Cbz-Phe(4F) can self-assemble into crystals with a C2 space group, while Cbz-Phe and Cbz-pentafluoro-Phe form aggregated self-assemblies. Moreover, Cbz-Phe(4F) crystals exhibit a remarkably higher piezoelectric coefficient (d 33 e f f $d_{\ 33}^{\ eff}$ ) of ≈17.9 pm V-1 than Cbz-Phe and Cbz-pentafluoro-Phe. When fabricated as a piezoelectric nanogenerator, it generates an open-circuit voltage of ≈2.4 V. Importantly, Cbz-Phe(4F) crystals serve as a flexible piezoelectric sensor for the classification of various nuts and their quality sorting, which includes those as small as individual pumpkin seeds with high sensitivity and accuracy of sorting and quality checks. When mounted onto soft grippers, the sensor performs the tactile self-sensing functions. This work provides a promising approach to designing high piezoelectric amino acids by simple fluorination, offering exciting prospects for advancements in bioinspired piezoelectric materials in the application of smart agriculture and soft robotics.
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Affiliation(s)
- Tan Hu
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore, 639798, Singapore
- Singapore-HUJ Alliance for Research and Enterprise (SHARE), The Smart Grippers for Soft Robotics (SGSR) Programme, Campus for Research Excellence and Technological Enterprise (CREATE), Singapore, 138602, Singapore
| | - Jin Pyo Lee
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore, 639798, Singapore
| | - Peiwen Huang
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore, 639798, Singapore
- Singapore-HUJ Alliance for Research and Enterprise (SHARE), The Smart Grippers for Soft Robotics (SGSR) Programme, Campus for Research Excellence and Technological Enterprise (CREATE), Singapore, 138602, Singapore
| | - Amanda Jiamin Ong
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore, 639798, Singapore
- Singapore-HUJ Alliance for Research and Enterprise (SHARE), The Smart Grippers for Soft Robotics (SGSR) Programme, Campus for Research Excellence and Technological Enterprise (CREATE), Singapore, 138602, Singapore
| | - Jian Yu
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore, 639798, Singapore
| | - Shuihong Zhu
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore, 639798, Singapore
| | - Yixuan Jiang
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore, 639798, Singapore
| | - Zhuo Zhang
- College of Life Science, Northeast Forestry University, Harbin, 150040, China
| | - Meital Reches
- Singapore-HUJ Alliance for Research and Enterprise (SHARE), The Smart Grippers for Soft Robotics (SGSR) Programme, Campus for Research Excellence and Technological Enterprise (CREATE), Singapore, 138602, Singapore
| | - Pooi See Lee
- School of Materials Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore, 639798, Singapore
- Singapore-HUJ Alliance for Research and Enterprise (SHARE), The Smart Grippers for Soft Robotics (SGSR) Programme, Campus for Research Excellence and Technological Enterprise (CREATE), Singapore, 138602, Singapore
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3
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Guan L, Tan J, Qi B, Chen Y, Cao M, Zhang Q, Zou Y. Effects of an external static EF on the conformational transition of 5-HT1A receptor: A molecular dynamics simulation study. Biophys Chem 2024; 312:107283. [PMID: 38941873 DOI: 10.1016/j.bpc.2024.107283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Revised: 05/13/2024] [Accepted: 06/16/2024] [Indexed: 06/30/2024]
Abstract
The serotonin receptor subtype 1A (5-HT1AR), one of the G-protein-coupled receptor (GPCR) family, has been implicated in several neurological conditions. Understanding the activation and inactivation mechanism of 5-HT1AR at the molecular level is critical for discovering novel therapeutics in many diseases. Recently there has been a growing appreciation for the role of external electric fields (EFs) in influencing the structure and activity of biomolecules. In this study, we used molecular dynamics (MD) simulations to examine conformational features of active states of 5-HT1AR and investigate the effect of an external static EF with 0.02 V/nm applied on the active state of 5-HT1AR. Our results showed that the active state of 5-HT1AR maintained the native structure, while the EF led to structural modifications in 5-HT1AR, particularly inducing the inward movement of transmembrane helix 6 (TM6). Furthermore, it disturbed the conformational switches associated with activation in the CWxP, DRY, PIF, and NPxxY motifs, consequently predisposing an inclination towards the inactive-like conformation. We also found that the EF led to an overall increase in the dipole moment of 5-HT1AR, encompassing TM6 and pivotal amino acids. The analyses of conformational properties of TM6 showed that the changed secondary structure and decreased solvent exposure occurred upon the EF condition. The interaction of 5-HT1AR with the membrane lipid bilayer was also altered under the EF. Our findings reveal the molecular mechanism underlying the transition of 5-HT1AR conformation induced by external EFs, which offer potential novel insights into the prospect of employing structure-based EF applications for GPCRs.
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Affiliation(s)
- Lulu Guan
- Department of Sport and Exercise Science, College of Education, Zhejiang University, 866 Yuhangtang Road, Hangzhou, Zhejiang 310058, PR China
| | - Jingwang Tan
- Department of Sport and Exercise Science, College of Education, Zhejiang University, 866 Yuhangtang Road, Hangzhou, Zhejiang 310058, PR China
| | - Bote Qi
- Department of Sport and Exercise Science, College of Education, Zhejiang University, 866 Yuhangtang Road, Hangzhou, Zhejiang 310058, PR China
| | - Yukang Chen
- Department of Sport and Exercise Science, College of Education, Zhejiang University, 866 Yuhangtang Road, Hangzhou, Zhejiang 310058, PR China
| | - Meng Cao
- Department of Physical Education, College of Sport, Shenzhen University, 3688 Nanhai Road, Shenzhen, Guangdong 518061, PR China
| | - Qingwen Zhang
- College of Physical Education, Shanghai University of Sport, 399 Changhai Road, Shanghai 200438, PR China
| | - Yu Zou
- Department of Sport and Exercise Science, College of Education, Zhejiang University, 866 Yuhangtang Road, Hangzhou, Zhejiang 310058, PR China.
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4
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Ali M, Bathaei MJ, Istif E, Karimi SNH, Beker L. Biodegradable Piezoelectric Polymers: Recent Advancements in Materials and Applications. Adv Healthc Mater 2023; 12:e2300318. [PMID: 37235849 PMCID: PMC11469082 DOI: 10.1002/adhm.202300318] [Citation(s) in RCA: 28] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 05/21/2023] [Indexed: 05/28/2023]
Abstract
Recent materials, microfabrication, and biotechnology improvements have introduced numerous exciting bioelectronic devices based on piezoelectric materials. There is an intriguing evolution from conventional unrecyclable materials to biodegradable, green, and biocompatible functional materials. As a fundamental electromechanical coupling material in numerous applications, novel piezoelectric materials with a feature of degradability and desired electrical and mechanical properties are being developed for future wearable and implantable bioelectronics. These bioelectronics can be easily integrated with biological systems for applications, including sensing physiological signals, diagnosing medical problems, opening the blood-brain barrier, and stimulating healing or tissue growth. Therefore, the generation of piezoelectricity from natural and synthetic bioresorbable polymers has drawn great attention in the research field. Herein, the significant and recent advancements in biodegradable piezoelectric materials, including natural and synthetic polymers, their principles, advanced applications, and challenges for medical uses, are reviewed thoroughly. The degradation methods of these piezoelectric materials through in vitro and in vivo studies are also investigated. These improvements in biodegradable piezoelectric materials and microsystems could enable new applications in the biomedical field. In the end, potential research opportunities regarding the practical applications are pointed out that might be significant for new materials research.
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Affiliation(s)
- Mohsin Ali
- Department of Biomedical Sciences and EngineeringKoç UniversityRumelifeneri YoluSarıyerIstanbul34450Turkey
| | - Mohammad Javad Bathaei
- Department of Biomedical Sciences and EngineeringKoç UniversityRumelifeneri YoluSarıyerIstanbul34450Turkey
| | - Emin Istif
- Department of Mechanical EngineeringKoç UniversityRumelifeneri YoluSarıyerIstanbul34450Turkey
- Faculty of Engineering and Natural SciencesKadir Has UniversityCibaliIstanbul34083Turkey
| | - Seyed Nasir Hosseini Karimi
- Koç University Research Center for Translational Research (KUTTAM)Rumelifeneri YoluSarıyerIstanbul34450Turkey
| | - Levent Beker
- Department of Biomedical Sciences and EngineeringKoç UniversityRumelifeneri YoluSarıyerIstanbul34450Turkey
- Department of Mechanical EngineeringKoç UniversityRumelifeneri YoluSarıyerIstanbul34450Turkey
- Koç University Research Center for Translational Research (KUTTAM)Rumelifeneri YoluSarıyerIstanbul34450Turkey
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5
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Bellotto O, D'Andrea P, Marchesan S. Nanotubes and water-channels from self-assembling dipeptides. J Mater Chem B 2023. [PMID: 36790014 DOI: 10.1039/d2tb02643k] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
Abstract
Dipeptides are attractive building blocks for biomaterials in light of their inherent biocompatibility, biodegradability, and simplicity of preparation. Since the discovery of diphenylalanine (Phe-Phe) self-assembling ability into nanotubes, research efforts have been devoted towards the identification of other dipeptide sequences capable of forming these interesting nanomorphologies, although design rules towards nanotube formation are still elusive. In this review, we analyze the dipeptide sequences reported thus far for their ability to form nanotubes, which often feature water-filled supramolecular channels as revealed by single-crystal X-ray diffraction, as well as their properties, and their potential biological applications, which span from drug delivery and regenerative medicine, to bioelectronics and bioimaging.
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Affiliation(s)
- Ottavia Bellotto
- Chem. Pharm. Sc. Dept., University of Trieste, Via Giorgieri 1, 34127 Trieste, Italy.
| | - Paola D'Andrea
- Life Sc. Dept., University of Trieste, Via Weiss 2, 34128 Trieste, Italy
| | - Silvia Marchesan
- Chem. Pharm. Sc. Dept., University of Trieste, Via Giorgieri 1, 34127 Trieste, Italy. .,INSTM, Unit of Trieste, Via Giorgieri 1, 34127 Trieste, Italy
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6
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Li T, Lu XM, Zhang MR, Hu K, Li Z. Peptide-based nanomaterials: Self-assembly, properties and applications. Bioact Mater 2022; 11:268-282. [PMID: 34977431 PMCID: PMC8668426 DOI: 10.1016/j.bioactmat.2021.09.029] [Citation(s) in RCA: 147] [Impact Index Per Article: 49.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Revised: 09/21/2021] [Accepted: 09/24/2021] [Indexed: 11/24/2022] Open
Abstract
Peptide-based materials that have diverse structures and functionalities are an important type of biomaterials. In former times, peptide-based nanomaterials with excellent stability were constructed through self-assembly. Compared with individual peptides, peptide-based self-assembly nanomaterials that form well-ordered superstructures possess many advantages such as good thermo- and mechanical stability, semiconductivity, piezoelectricity and optical properties. Moreover, due to their excellent biocompatibility and biological activity, peptide-based self-assembly nanomaterials have been vastly used in different fields. In this review, we provide the advances of peptide-based self-assembly nanostructures, focusing on the driving forces that dominate peptide self-assembly and assembly mechanisms of peptides. After that, we outline the synthesis and properties of peptide-based nanomaterials, followed by the applications of functional peptide nanomaterials. Finally, we provide perspectives on the challenges and future of peptide-based nanomaterials.
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Affiliation(s)
- Tong Li
- College of Chemistry and Chemical Engineering, Center of Nanoenergy Research, Guangxi University, Nanning, 530004, China
- Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing, 101400, China
| | - Xian-Mao Lu
- College of Chemistry and Chemical Engineering, Center of Nanoenergy Research, Guangxi University, Nanning, 530004, China
- Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing, 101400, China
- School of Nanoscience and Technology, University of Chinese Academy of Sciences, Beijing, 101400, China
| | - Ming-Rong Zhang
- Department of Advanced Nuclear Medicine Sciences, The National Institute of Radiological Sciences, The National Institutes for Quantum and Radiological Science and Technology, Chiba, 263-8555, Japan
| | - Kuan Hu
- Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing, 101400, China
- Department of Advanced Nuclear Medicine Sciences, The National Institute of Radiological Sciences, The National Institutes for Quantum and Radiological Science and Technology, Chiba, 263-8555, Japan
| | - Zhou Li
- College of Chemistry and Chemical Engineering, Center of Nanoenergy Research, Guangxi University, Nanning, 530004, China
- Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing, 101400, China
- School of Nanoscience and Technology, University of Chinese Academy of Sciences, Beijing, 101400, China
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7
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Narayan B, Herbert C, Rodriguez BJ, Brooks BR, Buchete NV. Replica Exchange Molecular Dynamics of Diphenylalanine Amyloid Peptides in Electric Fields. J Phys Chem B 2021; 125:5233-5242. [PMID: 33990140 PMCID: PMC8279545 DOI: 10.1021/acs.jpcb.1c01939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The self-assembling propensity of amyloid peptides such as diphenylalanine (FF) allows them to form ordered, nanoscale structures, with biocompatible properties important for biomedical applications. Moreover, piezoelectric properties allow FF molecules and their aggregates (e.g., FF nanotubes) to be aligned in a controlled way by the application of external electric fields. However, while the behavior of FF nanostructures emerges from the biophysical properties of the monomers, the detailed responses of individual peptides to both temperature and electric fields are not fully understood. Here, we study the temperature-dependent conformational dynamics of FF peptides solvated in explicit water molecules, an environment relevant to biomedical applications, by using an enhanced sampling method, replica exchange molecular dynamics (REMD), in conjunction with applied electric fields. Our simulations highlight and overcome possible artifacts that may occur during the setup of REMD simulations of explicitly solvated peptides in the presence of external electric fields, a problem particularly important in the case of short peptides such as FF. The presence of the external fields could overstabilize certain conformational states in one or more REMD replicas, leading to distortions of the underlying potential energy distributions observed at each temperature. This can be overcome by correcting the REMD initial conditions to include the lower-energy conformations induced by the external field. We show that the converged REMD data can be analyzed using a Markovian description of conformational states and show that a rather complex, 3-state, temperature-dependent conformational dynamics in the absence of electric fields collapses to only one of these states in the presence of the electric fields. These details on the temperature- and electric-field-dependent thermodynamic and kinetic properties of small FF amyloid peptides can be useful in understanding and devising new methods to control their aggregation-prone biophysical properties and, possibly, the structural and biophysical properties of FF molecular nanostructures.
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Affiliation(s)
- Brajesh Narayan
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland.,Institute for Discovery, University College Dublin, Belfield, Dublin 4, Ireland
| | - Colm Herbert
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland.,Institute for Discovery, University College Dublin, Belfield, Dublin 4, Ireland
| | - Brian J Rodriguez
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland.,Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland
| | - Bernard R Brooks
- Laboratory of Computational Biology, NHLBI, National Institutes of Health, Bethesda, Maryland 20892, United States
| | - Nicolae-Viorel Buchete
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland.,Institute for Discovery, University College Dublin, Belfield, Dublin 4, Ireland
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8
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Pandey G, Ramakrishnan V. Invasive and non-invasive therapies for Alzheimer's disease and other amyloidosis. Biophys Rev 2020; 12:1175-1186. [PMID: 32930962 PMCID: PMC7575678 DOI: 10.1007/s12551-020-00752-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Accepted: 08/31/2020] [Indexed: 12/12/2022] Open
Abstract
Advancements in medical science have facilitated in extending human lives. The increased life expectancy, though, has come at a cost. The cases of an aging population suffering from degenerative diseases like Alzheimer's disease (AD) are presently at its all-time high. Amyloidosis disorders such as AD are triggered by an abnormal transition of soluble proteins into their highly ordered aggregated forms. The landscape of amyloidosis treatment remains unchanged, and there is no cure for such disorders. However, an increased understanding of the mechanism of amyloid self-assembly has given hope for a possible therapeutic solution. In this review, we will discuss the current state of molecular and non-molecular options for therapeutic intervention of amyloidosis. We highlight the efficacy of non-invasive physical therapies as possible alternatives to their molecular counterparts. Graphical abstract.
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Affiliation(s)
- Gaurav Pandey
- Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati, 781039, India
| | - Vibin Ramakrishnan
- Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati, 781039, India.
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9
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Kim D, Han SA, Kim JH, Lee JH, Kim SW, Lee SW. Biomolecular Piezoelectric Materials: From Amino Acids to Living Tissues. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2020; 32:e1906989. [PMID: 32103565 DOI: 10.1002/adma.201906989] [Citation(s) in RCA: 109] [Impact Index Per Article: 21.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Revised: 12/16/2019] [Indexed: 06/10/2023]
Abstract
Biomolecular piezoelectric materials are considered a strong candidate material for biomedical applications due to their robust piezoelectricity, biocompatibility, and low dielectric property. The electric field has been found to affect tissue development and regeneration, and the piezoelectric properties of biological materials in the human body are known to provide electric fields by pressure. Therefore, great attention has been paid to the understanding of piezoelectricity in biological tissues and its building blocks. The aim herein is to describe the principle of piezoelectricity in biological materials from the very basic building blocks (i.e., amino acids, peptides, proteins, etc.) to highly organized tissues (i.e., bones, skin, etc.). Research progress on the piezoelectricity within various biological materials is summarized, including amino acids, peptides, proteins, and tissues. The mechanisms and origin of piezoelectricity within various biological materials are also covered.
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Affiliation(s)
- Daeyeong Kim
- Department of Energy Science and Engineering, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu, 42988, Republic of Korea
| | - Sang A Han
- School of Advanced Materials Science and Engineering, Sungkyunkwan University (SKKU), Suwon, 440-746, Republic of Korea
- Institute for Superconducting and Electronic Materials, Australian Institute for Innovative Materials, University of Wollongong, Squires Way, North Wollongong, NSW, 2500, Australia
| | - Jung Ho Kim
- Institute for Superconducting and Electronic Materials, Australian Institute for Innovative Materials, University of Wollongong, Squires Way, North Wollongong, NSW, 2500, Australia
| | - Ju-Hyuck Lee
- Department of Energy Science and Engineering, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu, 42988, Republic of Korea
| | - Sang-Woo Kim
- School of Advanced Materials Science and Engineering, Sungkyunkwan University (SKKU), Suwon, 440-746, Republic of Korea
| | - Seung-Wuk Lee
- Department of Bioengineering, University of California, Berkeley, CA, 94720, USA
- Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA
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10
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Song X, Fu Q, Bu Y. Nonlinear Migration Dynamics of Excess Electrons along Linear Oligopeptides Controlled by an Applied Electric Field. Chemphyschem 2019; 20:1497-1507. [PMID: 30912277 DOI: 10.1002/cphc.201900149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2019] [Revised: 03/16/2019] [Indexed: 11/06/2022]
Abstract
Migration of an excess electron along linear oligopeptides governed by the external electric field (Eex ) which is against the inner dipole electric field is theoretically investigated, including the effects of Eex on the structural and electronic properties of electron migration. Two structural properties including electron-binding ability and the dipole moment of linear oligopeptides are sensitive to the Eex values and can be largely modulated by Eex due to the competition of Eex and the inner electric field and electron transfer caused by Eex . In the case of low Eex values, two structural properties decrease slightly, while for high Eex values, the electron-binding ability continually increases strongly, with dipole moments firstly increasing significantly and then increasing more slowly at higher Eex . Additionally, linear oligopeptides of different chain lengths influence the modulation extent of Eex and the longer the chain length is, the more sensitive modulation of Eex is. In addition, electronic properties represented by electron spin densities and singly occupied molecular orbital distributions vary with Eex intensities, leading to an unusual electron migration behavior. As Eex increases, an excess electron transfers from the N-terminus to the C-terminus and jumps over a neighboring dipole unit of two termini to other units, respectively, instead of transferring by means of a one-by-one dipole unit hopping mechanism. These findings not only promote a deeper understanding of the connection between Eex and structural and electronic properties of electron transfer behavior in peptides, but also provide a new insight into the modulation of electron migration along the oligopeptides.
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Affiliation(s)
- Xiufang Song
- School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, People's Republic of China
| | - Qiang Fu
- School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, People's Republic of China
| | - Yuxiang Bu
- School of Chemistry and Chemical Engineering, Shandong University, Jinan, 250100, People's Republic of China.,School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu, 273165, People's Republic of China
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11
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Tabata Y, Kamano Y, Uji H, Imai T, Kimura S. Electronic Properties of Cyclic β-Peptide Nanotube Bundles Reflecting Structural Arrangement. CHEM LETT 2019. [DOI: 10.1246/cl.181007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Yuki Tabata
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Kyoto-Daigaku-Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Yusuke Kamano
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Kyoto-Daigaku-Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Hirotaka Uji
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Kyoto-Daigaku-Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
| | - Tomoya Imai
- Human Hemisphere, Kyoto University, Gokasho, Uji, Kyoto 611-0011, Japan
| | - Shunsaku Kimura
- Department of Material Chemistry, Graduate School of Engineering, Kyoto University, Kyoto-Daigaku-Katsura, Nishikyo-ku, Kyoto 615-8510, Japan
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12
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Pandey G, Morla S, Nemade HB, Kumar S, Ramakrishnan V. Modulation of aggregation with an electric field; scientific roadmap for a potential non-invasive therapy against tauopathies. RSC Adv 2019; 9:4744-4750. [PMID: 35514655 PMCID: PMC9060620 DOI: 10.1039/c8ra09993f] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Accepted: 01/22/2019] [Indexed: 11/21/2022] Open
Abstract
Toxic aggregation of tau protein to neurofibrillary tangles (NFTS) is a central pathological event involved in tauopathies. Inhibition of tau protein aggregation can serve as a straightforward therapeutic strategy. However, tau-based therapeutic solutions are not very common. Phenothiazine methylene blue (tau protein inhibitor) is currently the only drug under phase III clinical trials. In this work, a non-invasive strategy is presented for modulating the aggregation of core peptide segments of tau protein (VQIVYK and VQIINK) by using electric fields of varying strengths. We use thioflavin T staining, tyrosine fluorescence assay, electron microscopy, IR, dynamic and static light scattering, and neuronal toxicity estimation, for verifying the effect of electric field on the aggregation kinetics, morphology, conformational state and cellular toxicity of peptide systems. Our observations suggest that electric field arrests the self-assembly of VQIVYK and VQIINK fibrils thereby reducing the neurotoxicity instigated by them. Based on our observations, we propose a prospective scheme for a futuristic non-invasive therapeutic device.
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Affiliation(s)
- Gaurav Pandey
- Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati Guwahati-781039 India +91 361 258 2249 +91 361 258 2227
| | - Sudhir Morla
- Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati Guwahati-781039 India +91 361 258 2249 +91 361 258 2227
| | - Harshal B Nemade
- Department of Electronics and Electrical Engineering, Indian Institute of Technology Guwahati Guwahati-781039 India
| | - Sachin Kumar
- Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati Guwahati-781039 India +91 361 258 2249 +91 361 258 2227
| | - Vibin Ramakrishnan
- Department of Biosciences and Bioengineering, Indian Institute of Technology Guwahati Guwahati-781039 India +91 361 258 2249 +91 361 258 2227
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13
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Guerin S, O'Donnell J, Haq EU, McKeown C, Silien C, Rhen FMF, Soulimane T, Tofail SAM, Thompson D. Racemic Amino Acid Piezoelectric Transducer. PHYSICAL REVIEW LETTERS 2019; 122:047701. [PMID: 30768312 DOI: 10.1103/physrevlett.122.047701] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2018] [Revised: 12/05/2018] [Indexed: 05/26/2023]
Abstract
Single crystal L-amino acids can exhibit technologically useful piezoelectric and nonlinear optical properties. Here we predict, using density functional theory, the piezoelectric charge and strain and voltage tensors of the racemic amino acid DL alanine, and use the modeling data to guide the first macroscopic and nanoscopic piezoelectric measurements on DL-alanine single crystals and polycrystalline aggregates. We demonstrate voltage generation of up to 0.8 V from DL-alanine crystal films under simple manual compression, twice as high as other amino acid crystals. Our results suggest that net molecular chirality is not a prerequisite for piezoelectric behavior in organic crystals. The transducer presented herein demonstrates that DL-alanine crystals can be used in applications such as temperature and force measurement in biosensors, data storage in flexible electronic devices, and mechanical actuation in energy harvesters.
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Affiliation(s)
- Sarah Guerin
- Department of Physics, University of Limerick, Limerick V94 T9PX, Ireland
- Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland
| | - Joseph O'Donnell
- Department of Physics, University of Limerick, Limerick V94 T9PX, Ireland
- Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland
| | - Ehtsham U Haq
- Department of Physics, University of Limerick, Limerick V94 T9PX, Ireland
- Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland
| | - Cian McKeown
- Department of Physics, University of Limerick, Limerick V94 T9PX, Ireland
- Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland
| | - Christophe Silien
- Department of Physics, University of Limerick, Limerick V94 T9PX, Ireland
- Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland
| | - Fernando M F Rhen
- Department of Physics, University of Limerick, Limerick V94 T9PX, Ireland
- Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland
| | - Tewfik Soulimane
- Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland
- Department of Chemical Sciences, University of Limerick, Limerick V94 T9PX, Ireland
| | - Syed A M Tofail
- Department of Physics, University of Limerick, Limerick V94 T9PX, Ireland
- Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland
| | - Damien Thompson
- Department of Physics, University of Limerick, Limerick V94 T9PX, Ireland
- Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland
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14
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Narayan B, Herbert C, Yuan Y, Rodriguez BJ, Brooks BR, Buchete NV. Conformational analysis of replica exchange MD: Temperature-dependent Markov networks for FF amyloid peptides. J Chem Phys 2018; 149:072323. [PMID: 30134732 DOI: 10.1063/1.5027580] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
Recent molecular modeling methods using Markovian descriptions of conformational states of biomolecular systems have led to powerful analysis frameworks that can accurately describe their complex dynamical behavior. In conjunction with enhanced sampling methods, such as replica exchange molecular dynamics (REMD), these frameworks allow the systematic and accurate extraction of transition probabilities between the corresponding states, in the case of Markov state models, and of statistically-optimized transition rates, in the case of the corresponding coarse master equations. However, applying automatically such methods to large molecular dynamics (MD) simulations, with explicit water molecules, remains limited both by the initial ability to identify good candidates for the underlying Markovian states and by the necessity to do so using good collective variables as reaction coordinates that allow the correct counting of inter-state transitions at various lag times. Here, we show that, in cases when representative molecular conformations can be identified for the corresponding Markovian states, and thus their corresponding collective evolution of atomic positions can be calculated along MD trajectories, one can use them to build a new type of simple collective variable, which can be particularly useful in both the correct state assignment and in the subsequent accurate counting of inter-state transition probabilities. In the case of the ubiquitously used root-mean-square deviation (RMSD) of atomic positions, we introduce the relative RMSD (RelRMSD) measure as a good reaction coordinate candidate. We apply this method to the analysis of REMD trajectories of amyloid-forming diphenylalanine (FF) peptides-a system with important nanotechnology and biomedical applications due to its self-assembling and piezoelectric properties-illustrating the use of RelRMSD in extracting its temperature-dependent intrinsic kinetics, without a priori assumptions on the functional form (e.g., Arrhenius or not) of the underlying conformational transition rates. The RelRMSD analysis enables as well a more objective assessment of the convergence of the REMD simulations. This type of collective variable may be generalized to other observables that could accurately capture conformational differences between the underlying Markov states (e.g., distance RMSD, the fraction of native contacts, etc.).
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Affiliation(s)
- Brajesh Narayan
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland
| | - Colm Herbert
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland
| | - Ye Yuan
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland
| | - Brian J Rodriguez
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland
| | - Bernard R Brooks
- Laboratory of Computational Biology, NHLBI, National Institutes of Health, Bethesda, Maryland 20892, USA
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15
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Safaryan S, Slabov V, Kopyl S, Romanyuk K, Bdikin I, Vasilev S, Zelenovskiy P, Shur VY, Uslamin EA, Pidko EA, Vinogradov AV, Kholkin AL. Diphenylalanine-Based Microribbons for Piezoelectric Applications via Inkjet Printing. ACS APPLIED MATERIALS & INTERFACES 2018; 10:10543-10551. [PMID: 29498259 DOI: 10.1021/acsami.7b19668] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Peptide-based nanostructures are very promising for nanotechnological applications because of their excellent self-assembly properties, biological and chemical flexibility, and unique multifunctional performance. However, one of the limiting factors for the integration of peptide assemblies into functional devices is poor control of their alignment and other geometrical parameters required for device fabrication. In this work, we report a novel method for the controlled deposition of one of the representative self-assembled peptides-diphenylalanine (FF)-using a commercial inkjet printer. The initial FF solution, which has been shown to readily self-assemble into different structures such as nano- and microtubes and microrods, was modified to be used as an efficient ink for the printing of aligned FF-based structures. Furthermore, during the development of the suitable ink, we were able to produce a novel type of FF conformation with high piezoelectric response and excellent stability. By using this method, ribbonlike microcrystals based on FF could be formed and precisely patterned on different surfaces. Possible mechanisms of structure formation and piezoelectric effect in printed microribbons are discussed along with the possible applications.
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Affiliation(s)
- Sofia Safaryan
- Laboratory of Solution Chemistry of Advanced Materials and Technologies , ITMO University , St. Petersburg 197101 , Russian Federation
| | - Vladislav Slabov
- Laboratory of Solution Chemistry of Advanced Materials and Technologies , ITMO University , St. Petersburg 197101 , Russian Federation
| | - Svitlana Kopyl
- Department of Physics & CICECO-Aveiro Institute of Materials , University of Aveiro , 3810-193 Aveiro , Portugal
| | - Konstantin Romanyuk
- Department of Physics & CICECO-Aveiro Institute of Materials , University of Aveiro , 3810-193 Aveiro , Portugal
- School of Natural Sciences and Mathematics , Ural Federal University , Ekaterinburg 620000 , Russian Federation
| | - Igor Bdikin
- Department of Mechanical Engineering & TEMA- Centre for Mechanical Technology and Automation , University of Aveiro , 3810-193 Aveiro , Portugal
| | - Semen Vasilev
- School of Natural Sciences and Mathematics , Ural Federal University , Ekaterinburg 620000 , Russian Federation
| | - Pavel Zelenovskiy
- School of Natural Sciences and Mathematics , Ural Federal University , Ekaterinburg 620000 , Russian Federation
| | - Vladimir Ya Shur
- School of Natural Sciences and Mathematics , Ural Federal University , Ekaterinburg 620000 , Russian Federation
| | - Evgeny A Uslamin
- Inorganic Materials Chemistry Group , Eindhoven University of Technology , PO Box 513, Eindhoven 5600 MB , The Netherlands
| | - Evgeny A Pidko
- Laboratory of Solution Chemistry of Advanced Materials and Technologies , ITMO University , St. Petersburg 197101 , Russian Federation
- Inorganic Materials Chemistry Group , Eindhoven University of Technology , PO Box 513, Eindhoven 5600 MB , The Netherlands
| | - Alexander V Vinogradov
- Laboratory of Solution Chemistry of Advanced Materials and Technologies , ITMO University , St. Petersburg 197101 , Russian Federation
| | - Andrei L Kholkin
- Department of Physics & CICECO-Aveiro Institute of Materials , University of Aveiro , 3810-193 Aveiro , Portugal
- School of Natural Sciences and Mathematics , Ural Federal University , Ekaterinburg 620000 , Russian Federation
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16
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Modulation of Peptide Based Nano-Assemblies with Electric and Magnetic Fields. Sci Rep 2017; 7:2726. [PMID: 28578415 PMCID: PMC5457452 DOI: 10.1038/s41598-017-02609-z] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2017] [Accepted: 04/12/2017] [Indexed: 12/30/2022] Open
Abstract
Peptide based nano-assemblies with their self-organizing ability has shown lot of promise due to their high degree of thermal and chemical stability, for biomaterial fabrication. Developing an effective way to control the organization of these structures is important for fabricating application-oriented materials at the molecular level. The present study reports the impact of electric and magnetic field-mediated perturbation of the self-assembly phenomenon, upon the chemical and structural properties of diphenylalanine assembly. Our studies show that, electric field effectively arrests aggregation and self-assembly formation, while the molecule is allowed to anneal in the presence of applied electric fields of varying magnitudes, both AC and DC. The electric field exposure also modulated the morphology of the self-assembled structures without affecting the overall chemical constitution of the material. Our results on the modulatory effect of the electric field are in good agreement with theoretical studies based on molecular dynamics reported earlier on amyloid forming molecular systems. Furthermore, we demonstrate that the self-assemblies formed post electric-field exposure, showed difference in their crystal habit. Modulation of nano-level architecture of peptide based model systems with external stimulus, points to a potentially rewarding strategy to re-work proven nano-materials to expand their application spectrum.
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17
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Ryan K, Neumayer SM, Maraka HVR, Buchete NV, Kholkin AL, Rice JH, Rodriguez BJ. Thermal and aqueous stability improvement of graphene oxide enhanced diphenylalanine nanocomposites. SCIENCE AND TECHNOLOGY OF ADVANCED MATERIALS 2017; 18:172-179. [PMID: 28458741 PMCID: PMC5402763 DOI: 10.1080/14686996.2016.1277504] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2016] [Revised: 12/08/2016] [Accepted: 12/26/2016] [Indexed: 05/23/2023]
Abstract
Nanocomposites of diphenylalanine (FF) and carbon based materials provide an opportunity to overcome drawbacks associated with using FF micro- and nanostructures in nanobiotechnology applications, in particular their poor structural stability in liquid solutions. In this study, FF/graphene oxide (GO) composites were found to self-assemble into layered micro- and nanostructures, which exhibited improved thermal and aqueous stability. Dependent on the FF/GO ratio, the solubility of these structures was reduced to 35.65% after 30 min as compared to 92.4% for pure FF samples. Such functional nanocomposites may extend the use of FF structures to e.g. biosensing, electrochemical, electromechanical or electronic applications.
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Affiliation(s)
- Kate Ryan
- School of Physics, University College Dublin, Dublin, Ireland
- Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Dublin, Ireland
| | - Sabine M. Neumayer
- School of Physics, University College Dublin, Dublin, Ireland
- Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Dublin, Ireland
| | | | - Nicolae-Viorel Buchete
- School of Physics, University College Dublin, Dublin, Ireland
- Institute for Discovery, University College Dublin, Dublin, Ireland
| | - Andrei L. Kholkin
- Department of Physics, CICECO-Aveiro Institute of Materials, Aveiro, Portugal
- Institute of Natural Sciences, Ural Federal University, Ekaterinburg, Russia
| | - James H. Rice
- School of Physics, University College Dublin, Dublin, Ireland
| | - Brian J. Rodriguez
- School of Physics, University College Dublin, Dublin, Ireland
- Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Dublin, Ireland
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18
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Nguyen V, Zhu R, Jenkins K, Yang R. Self-assembly of diphenylalanine peptide with controlled polarization for power generation. Nat Commun 2016; 7:13566. [PMID: 27857133 PMCID: PMC5120215 DOI: 10.1038/ncomms13566] [Citation(s) in RCA: 168] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2016] [Accepted: 10/16/2016] [Indexed: 01/05/2023] Open
Abstract
Peptides have attracted considerable attention due to their biocompatibility, functional molecular recognition and unique biological and electronic properties. The strong piezoelectricity in diphenylalanine peptide expands its technological potential as a smart material. However, its random and unswitchable polarization has been the roadblock to fulfilling its potential and hence the demonstration of a piezoelectric device remains lacking. Here we show the control of polarization with an electric field applied during the peptide self-assembly process. Uniform polarization is obtained in two opposite directions with an effective piezoelectric constant d33 reaching 17.9 pm V−1. We demonstrate the power generation with a peptide-based power generator that produces an open-circuit voltage of 1.4 V and a power density of 3.3 nW cm−2. Devices enabled by peptides with controlled piezoelectricity provide a renewable and biocompatible energy source for biomedical applications and open up a portal to the next generation of multi-functional electronics compatible with human tissue. Piezoelectricity in diphenylalanine peptide nanotubes (PNTs) suggests an avenue towards green piezoelectric devices. Here the authors show ‘smart' PNTs whose polarization can be controlled with an electric field, and a resultant power generator which harvests biomechanical energy with high power density.
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Affiliation(s)
- Vu Nguyen
- Department of Mechanical Engineering, University of Minnesota, Minneapolis, MN 55455, USA
| | - Ren Zhu
- Department of Mechanical Engineering, University of Minnesota, Minneapolis, MN 55455, USA
| | - Kory Jenkins
- Department of Mechanical Engineering, University of Minnesota, Minneapolis, MN 55455, USA
| | - Rusen Yang
- Department of Mechanical Engineering, University of Minnesota, Minneapolis, MN 55455, USA
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19
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Andrade-Filho T, Martins TC, Ferreira FF, Alves WA, Rocha AR. Water-driven stabilization of diphenylalanine nanotube structures. Theor Chem Acc 2016. [DOI: 10.1007/s00214-016-1936-3] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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20
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Xu L, Nussinov R, Ma B. Allosteric stabilization of the amyloid-β peptide hairpin by the fluctuating N-terminal. Chem Commun (Camb) 2016; 52:1733-6. [PMID: 26666686 PMCID: PMC4720562 DOI: 10.1039/c5cc08107f] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Immobilized ions modulate nearby hydrophobic interactions and influence molecular recognition and self-assembly. We simulated disulfide bond-locked double mutants (L17C/L34C) and observed allosteric modulation of the peptide's intra-molecular interactions by the N-terminal tail. We revealed that the non-contacting charged N-terminal residues help the transfer of entropy to the surrounding solvation shell and stabilizing β-hairpin.
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Affiliation(s)
- Liang Xu
- School of Chemistry, Dalian University of Technology, Dalian, China
| | - Ruth Nussinov
- Basic Science Program, Leidos Biomedical Research, Inc. Cancer and Inflammation Program, National Cancer Institute, Frederick, MD 21702, USA
- Sackler Inst. of Molecular Medicine Department of Human Genetics and Molecular Medicine Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel
| | - Buyong Ma
- Basic Science Program, Leidos Biomedical Research, Inc. Cancer and Inflammation Program, National Cancer Institute, Frederick, MD 21702, USA
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21
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Kelly CM, Muzard J, Brooks BR, Lee GU, Buchete NV. Structure and dynamics of the fibronectin-III domains of Aplysia californica cell adhesion molecules. Phys Chem Chem Phys 2016; 17:9634-43. [PMID: 25729787 DOI: 10.1039/c4cp05307a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Due to their homophilic and heterophilic binding properties, cell adhesion molecules (CAMs) such as integrin, cadherin and the immunoglobulin superfamily CAMs are of primary importance in cell-cell and cell-substrate interactions, signalling pathways and other crucial biological processes. We study the molecular structures and conformational dynamics of the two fibronectin type III (Fn-III) extracellular domains of the Aplysia californica CAM (apCAM) protein, by constructing and probing an atomically-detailed structural model based on apCAM's homology with other CAMs. The stability and dynamic properties of the Fn-III domains, individually and in tandem, are probed and analysed using all-atom explicit-solvent molecular dynamics (MD) simulations and normal mode analysis of their corresponding elastic network models. The refined structural model of the Fn-III tandem of apCAM reveals a specific pattern of amino acid interactions that controls the stability of the β-sheet rich structure and could affect apCAM's response to physical or chemical changes of its environment. It also exposes the important role of several specific charged residues in modulating the structural properties of the linker segment connecting the two Fn-III domains, as well as of the inter-domain interface.
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Affiliation(s)
- Catherine M Kelly
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland.
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22
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Almohammed S, Oladapo SO, Ryan K, Kholkin AL, Rice JH, Rodriguez BJ. Wettability gradient-induced alignment of peptide nanotubes as templates for biosensing applications. RSC Adv 2016. [DOI: 10.1039/c6ra05732b] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Peptide nanotubes coated with silver nanoparticles and aligned using wettability-patterned substrates provide improved Raman intensity for biosensing applications.
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Affiliation(s)
- Sawsan Almohammed
- School of Physics
- University College Dublin
- Dublin 4
- Ireland
- Conway Institute of Biomolecular and Biomedical Research
| | | | - Kate Ryan
- School of Physics
- University College Dublin
- Dublin 4
- Ireland
- Conway Institute of Biomolecular and Biomedical Research
| | - Andrei L. Kholkin
- Department of Physics & CICECO – Aveiro Institute of Materials
- 3810-193 Aveiro
- Portugal
- Institute of Natural Sciences
- Ural Federal University
| | - James H. Rice
- School of Physics
- University College Dublin
- Dublin 4
- Ireland
| | - Brian J. Rodriguez
- School of Physics
- University College Dublin
- Dublin 4
- Ireland
- Conway Institute of Biomolecular and Biomedical Research
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23
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Marchesan S, Vargiu AV, Styan KE. The Phe-Phe Motif for Peptide Self-Assembly in Nanomedicine. Molecules 2015; 20:19775-88. [PMID: 26540034 PMCID: PMC6332413 DOI: 10.3390/molecules201119658] [Citation(s) in RCA: 115] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Revised: 10/25/2015] [Accepted: 10/27/2015] [Indexed: 01/19/2023] Open
Abstract
Since its discovery, the Phe-Phe motif has gained in popularity as a minimalist building block to drive the self-assembly of short peptides and their analogues into nanostructures and hydrogels. Molecules based on the Phe-Phe motif have found a range of applications in nanomedicine, from drug delivery and biomaterials to new therapeutic paradigms. Here we discuss the various production methods for this class of compounds, and the characterization, nanomorphologies, and application of their self-assembled nanostructures. We include the most recent findings on their remarkable properties, which hold substantial promise for the creation of the next generation nanomedicines.
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Affiliation(s)
- Silvia Marchesan
- Chemical and Pharmaceutical Sciences Department, University of Trieste, Via L. Giorgieri 1, Trieste 34127, Italy.
| | - Attilio V Vargiu
- Department of Physics, University of Cagliari, Cittadella Universitaria S.P. Monserrato-Sestu Km. 0.700, Monserrato 09042, Italy.
| | - Katie E Styan
- CSIRO Manufacturing, Bayview Ave Clayton, VIC 3168, Australia.
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24
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Chen C, Liu K, Li J, Yan X. Functional architectures based on self-assembly of bio-inspired dipeptides: Structure modulation and its photoelectronic applications. Adv Colloid Interface Sci 2015; 225:177-93. [PMID: 26365127 DOI: 10.1016/j.cis.2015.09.001] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2015] [Revised: 09/01/2015] [Accepted: 09/02/2015] [Indexed: 11/16/2022]
Abstract
Getting inspiration from nature and further developing functional architectures provides an effective way to design innovative materials and systems. Among bio-inspired materials, dipeptides and its self-assembled architectures with functionalities have recently been the subject of intensive studies. However, there is still a great challenge to explore its applications likely due to the lack of effective adaptation of their self-assembled structures as well as a lack of understanding of the self-assembly mechanisms. In this context, taking diphenylalanine (FF, a core recognition motif for molecular self-assembly of the Alzheimer's β-amyloid polypeptides) as a model of bio-inspired dipeptides, recent strategies on modulation of dipeptide-based architectures were introduced with regard to both covalent (architectures modulation by coupling functional groups) and non-covalent ways (controlled architectures by different assembly pathways). Then, applications are highlighted in some newly emerging fields of innovative photoelectronic devices and materials, such as artificial photosynthetic systems for renewable solar energy storage and renewable optical waveguiding materials for optoelectronic devices. At last, the challenges and future perspectives of these bio-inspired dipeptides are also addressed.
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Affiliation(s)
- Chengjun Chen
- National Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China; Center for Mesoscience, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China
| | - Kai Liu
- National Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Junbai Li
- Key Lab of Colloid and Interface Science, Center for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Xuehai Yan
- National Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China; Center for Mesoscience, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China.
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25
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Ryan K, Beirne J, Redmond G, Kilpatrick JI, Guyonnet J, Buchete NV, Kholkin AL, Rodriguez BJ. Nanoscale Piezoelectric Properties of Self-Assembled Fmoc-FF Peptide Fibrous Networks. ACS APPLIED MATERIALS & INTERFACES 2015; 7:12702-12707. [PMID: 25994251 DOI: 10.1021/acsami.5b01251] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Fibrous peptide networks, such as the structural framework of self-assembled fluorenylmethyloxycarbonyl diphenylalanine (Fmoc-FF) nanofibrils, have mechanical properties that could successfully mimic natural tissues, making them promising materials for tissue engineering scaffolds. These nanomaterials have been determined to exhibit shear piezoelectricity using piezoresponse force microscopy, as previously reported for FF nanotubes. Structural analyses of Fmoc-FF nanofibrils suggest that the observed piezoelectric response may result from the noncentrosymmetric nature of an underlying β-sheet topology. The observed piezoelectricity of Fmoc-FF fibrous networks is advantageous for a range of biomedical applications where electrical or mechanical stimuli are required.
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Affiliation(s)
- Kate Ryan
- †School of Physics, University College Dublin, Belfield, Dublin 4, Ireland
- ‡Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland
| | - Jason Beirne
- §School of Chemistry and Chemical Biology, University College Dublin, Belfield, Dublin 4, Ireland
| | - Gareth Redmond
- §School of Chemistry and Chemical Biology, University College Dublin, Belfield, Dublin 4, Ireland
| | - Jason I Kilpatrick
- ‡Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland
| | - Jill Guyonnet
- †School of Physics, University College Dublin, Belfield, Dublin 4, Ireland
- ‡Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland
| | - Nicolae-Viorel Buchete
- †School of Physics, University College Dublin, Belfield, Dublin 4, Ireland
- ∥Complex and Adaptive Systems Laboratory, University College Dublin, Belfield, Dublin 4, Ireland
| | - Andrei L Kholkin
- #Ural Federal University, Lenin Ave. 51, Ekaterinburg 620083, Russia
| | - Brian J Rodriguez
- †School of Physics, University College Dublin, Belfield, Dublin 4, Ireland
- ‡Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland
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Tofoleanu F, Brooks BR, Buchete NV. Modulation of Alzheimer's Aβ protofilament-membrane interactions by lipid headgroups. ACS Chem Neurosci 2015; 6:446-55. [PMID: 25581460 DOI: 10.1021/cn500277f] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
The molecular pathogenesis of Alzheimer's disease (AD) is complex and sparsely understood. The relationship between AD's amyloid β (Aβ) peptides and neuronal membranes is central to Aβ's cytotoxicity and is directly modulated by the composition of the lipid headgroups. Molecular studies of the insertion of model Aβ40 protofilaments in lipid bilayers revealed strong interactions that affect the structural integrity of both the membranes and the ordered amyloid aggregates. In particular, electrostatics plays a crucial role in the interaction between Aβ protofilaments and palmytoil-oleoyl-phosphatidylethanolamine (POPE) lipids, a common component of neuronal plasma membranes. Here, we use all-atom molecular dynamics and steered molecular dynamics simulations to systematically compare the effects that POPE and palmytoil-oleoyl-phosphatidylcholine (POPC) headgroups have on the Aβ-lipid interactions. We find that Aβ protofilaments exhibit weaker electrostatic interactions with POPC headgroups and establish significantly shorter-lived contacts with the POPC bilayer. This illustrates the crucial yet complex role of electrostatic and hydrogen bonding interactions in modulating the anchoring and insertion of Aβ peptides into lipid bilayers. Our study reveals the atomistic details behind the barrier created by the lipid headgroup region in impeding solution-aggregated fibrillar oligomers to spontaneously insert into POPC bilayers, in contrast to the POPE case. While the biological reality is notoriously more complex (e.g., including other factors such as cholesterol), our results evidence a simple experimentally and computationally testable case for probing the factors that control the insertion of Aβ oligomeric aggregates in neuronal cell membranes--a process central to their neurotoxicity.
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Affiliation(s)
- Florentina Tofoleanu
- Laboratory
of Computational Biology, Biochemistry and Biophysics Center, National
Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, United States
| | - Bernard R. Brooks
- Laboratory
of Computational Biology, Biochemistry and Biophysics Center, National
Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, United States
| | - Nicolae-Viorel Buchete
- School of Physics & Complex and Adaptive Systems Laboratory, University College Dublin, Belfield, Dublin 4, Ireland
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