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Wu J, Qi Y, Zhang W, Liu L, Chen J, Yang Y, Zhang X, Liu X, Shi Y. Metagenomic next-generation sequencing for etiological diagnosis of an unexpected rabies case with unclear exposure history. BMC Infect Dis 2025; 25:258. [PMID: 39994640 PMCID: PMC11849319 DOI: 10.1186/s12879-025-10687-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Accepted: 02/19/2025] [Indexed: 02/26/2025] Open
Abstract
BACKGROUND Rabies is an acute and lethal zoonotic disease caused by the rabies virus (RABV). After onset, there are no effective drugs or treatment methods. CASE PRESENTATION A 49-year-old female from Hefei, Anhui Province, China, presented to a local hospital with fever, pruritus, chest distress, and shortness of breath. During the consultation, the patient exhibited agitation and was later admitted to the intensive care unit (ICU) in the local hospital for endotracheal intubation and mechanical ventilation due to worsened agitation and dyspnea. Cerebrospinal fluid (CSF) and blood samples were collected and pathogenic microorganism identification was performed by culture and mNGS. However, all results were negative. In addition, the patient did not display typical rabies-specific symptoms such as aerophobia, hydrophobia or photophobia from onset to admission. Subsequently, saliva samples were collected for mNGS detection following consultation with experts at our hospital. Nucleic acid sequences uniquely aligned to the rabies virus (RABV) were identified in these samples. The result was further confirmed by local Center for Disease Control and Prevention (CDC) through RT-qPCR which detected part of the N gene of RABV in the saliva sample. The patient was then transferred to the ICU for isolation. Unfortunately, the patient died on the 10th day of admission due to multiple organ failure. The detection of human rabies virus IgG antibodies reported positive during the advanced stage of the disease during the hospitalization. We consistently verified with the patient's family member that there was no clear history of animal bites and no history of RABV vaccination. Furthermore, we performed phylogenetic analysis of partial L and G gene sequences of RABV obtained by mNGS (designated HFG23-L and HFG23-G, respectively), the results showed that both HFG23-L and HFG23-G belonged to the China I lineage, and shared 99.7% similarity with the Fengtai strain isolated from dogs in Beijing. CONCLUSIONS The identification of unique RABV sequence through mNGS in the patient's saliva sample suggested that mNGS could serve as a valuable screening tool for the etiological diagnosis of rabies, especially when timely laboratory testing was unavailable or when patients lacked non-specific prodromal symptom and clear exposure history.
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Affiliation(s)
- Jing Wu
- Department of Laboratory Medicine, Infection Hospital Area of the First Affiliated Hospital of University of Science and Technology of China (Hefei Infectious Disease Hospital), No. 218 Susong Road, Hefei, 230000, Anhui Province, People's Republic of China
| | - Yingjie Qi
- Department of Laboratory Medicine, Infection Hospital Area of the First Affiliated Hospital of University of Science and Technology of China (Hefei Infectious Disease Hospital), No. 218 Susong Road, Hefei, 230000, Anhui Province, People's Republic of China
| | - Wenyan Zhang
- The Center of Disease Control and Prevention in Hefei, 230001, Hefei, China
| | - Lixue Liu
- Clin Lab, BGI Genomics, Shanghai, 201321, China
- BGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China
| | - Jiangrong Chen
- Clin Lab, BGI Genomics, Shanghai, 201321, China
- BGI Genomics, BGI-Shenzhen, Shenzhen, 518083, China
| | - Yun Yang
- Department of Laboratory Medicine, Infection Hospital Area of the First Affiliated Hospital of University of Science and Technology of China (Hefei Infectious Disease Hospital), No. 218 Susong Road, Hefei, 230000, Anhui Province, People's Republic of China
| | - Xuanshun Zhang
- Department of Laboratory Medicine, Infection Hospital Area of the First Affiliated Hospital of University of Science and Technology of China (Hefei Infectious Disease Hospital), No. 218 Susong Road, Hefei, 230000, Anhui Province, People's Republic of China
| | - Xinru Liu
- Division of Life Sciences and Medicine, The First Affiliated Hospital of USTC, University of Science and Technology of China, Hefei, 230027, China
| | - Yuru Shi
- Department of Laboratory Medicine, Infection Hospital Area of the First Affiliated Hospital of University of Science and Technology of China (Hefei Infectious Disease Hospital), No. 218 Susong Road, Hefei, 230000, Anhui Province, People's Republic of China.
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Lv MM, Sun XD, Jin Z, Wu HR, Li MT, Sun GQ, Pei X, Wu YT, Liu P, Li L, Zhang J. Dynamic analysis of rabies transmission and elimination in mainland China. One Health 2023; 17:100615. [PMID: 37638210 PMCID: PMC10458286 DOI: 10.1016/j.onehlt.2023.100615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 08/07/2023] [Accepted: 08/15/2023] [Indexed: 08/29/2023] Open
Abstract
Rabies is an acute zoonotic infectious disease caused by rabies virus. In 2015, the World Health Organization proposed the goal of eliminating dog-induced human rabies by 2030. In response to this goal positively, China has been dedicated to the control and elimination of rabies mainly caused by dogs, for nearly 10 years. By applying infectious disease dynamics, in this paper, we establish a dog-human rabies transmission model to forecast future epidemic trends of rabies, assess whether the goal of eliminating dog-induced human rabies cases in China can be achieved in 2030, and further evaluate and suggest the follow-up sustained preventive measures after the elimination of human rabies. By analyzing and simulating above dynamic model, it is concluded that rabies has been well controlled in China in recent years, but dog-induced human rabies cannot be eliminated by 2030 according to current situation. In addition, we propose to improve rabies control efforts by increasing the immunization coverage rate of rural domestic dogs, controlling the number of stray dogs and preventing the import of rabies virus in wild animals. Immunization coverage rate of rural domestic dogs which is currently less than 10% is far from requirement, and it needs to reach 50%-60% to meet the goal of 2030. Since it is difficult to immunize stray dogs, we suggest to control the number of stray dogs below 15.27 million to achieve the goal. If the goal of eliminating human rabies is reached in 2030, the essential immunization coverage needs to be maintained for 18 years to reduce the number of canine rabies cases to zero. Lastly, to prevent transmission of rabies virus from wild animals to dogs, the thresholds of the number of dogs and the immunization coverage rate of dogs after eliminating canine rabies cases are also discussed.
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Affiliation(s)
- Miao-Miao Lv
- Complex Systems Research Center, Shanxi University, Taiyuan 030006, China
- Complex Systems and Data Science Key Laboratory of Ministry of Education, Taiyuan 030006, China
- School of Mathematical Sciences, Shanxi University, Shanxi, Taiyuan 030006, China
| | - Xiang-Dong Sun
- The Laboratory of Animal Epidemiological Surveillance, China Animal Health and Epidemiology Center, Shandong, Qingdao 266032, China
| | - Zhen Jin
- Complex Systems Research Center, Shanxi University, Taiyuan 030006, China
- Complex Systems and Data Science Key Laboratory of Ministry of Education, Taiyuan 030006, China
- School of Mathematical Sciences, Shanxi University, Shanxi, Taiyuan 030006, China
| | - Hai-Rong Wu
- School of Journalism and Communication, Guangxi University, Nanning 530004, China
| | - Ming-Tao Li
- College of Mathematics, Taiyuan University of Technology, Shanxi, Taiyuan 030024, China
| | - Gui-Quan Sun
- School of Mathematics, North University of China, Shanxi, Taiyuan 030051, China
| | - Xin Pei
- College of Mathematics, Taiyuan University of Technology, Shanxi, Taiyuan 030024, China
| | - Yu-Tong Wu
- Beijing University of Civil Engineering and Architecture, Beijing 102616, China
| | - Ping Liu
- The Laboratory of Animal Epidemiological Surveillance, China Animal Health and Epidemiology Center, Shandong, Qingdao 266032, China
| | - Li Li
- School of Computer and Information Technology, Shanxi University, Taiyuan 030006, China
| | - Juan Zhang
- Complex Systems Research Center, Shanxi University, Taiyuan 030006, China
- Complex Systems and Data Science Key Laboratory of Ministry of Education, Taiyuan 030006, China
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Feng Y, Wang Y, Hada, Deijide, Gaosuyilatu, Li X, Xu Z, Hasibagen, Bulage A, Li L, Sarula, Guo Y, Ma J, Kou Z, Sun S, Zhang L, Liu T, Xu W, Feng H, Zhao Z, Tu Z, Liu Y, Tu C. Diversity of rabies virus detected in Inner Mongolia, China, 2019-2021. Transbound Emerg Dis 2022; 69:249-253. [PMID: 35001535 DOI: 10.1111/tbed.14451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Revised: 01/03/2022] [Accepted: 01/04/2022] [Indexed: 11/30/2022]
Abstract
Rabies is a serious public health issue in China, with over 95% of human infections transmitted by dogs. As part of a routine surveillance carried out in the Inner Mongolia Autonomous Region (IMAR) between 2019 and 2021, 80 of 95 suspected rabies cases in domestic animals (dogs, livestock) and wild carnivores (foxes, badgers, a raccoon dog) were confirmed as rabies virus (RABV) positive. Phylogenetic analysis of RABVs of the 80 cases based on complete N genes showed that 97.5% (78/80) of the virus strains belonged to the Cosmopolitan (steppe-type) clade, with one in each of Arctic-related (AL2) and Asian (SEA1) clades. The data show that infected foxes have become a major transmission source of rabies in China, second only to dogs, and play a pivotal role in animal rabies epizootics in the north and northwest of the country. The recent spread of fox rabies to other animal species presents an increasing threat to public health and emphasizes the importance of animal rabies surveillance.
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Affiliation(s)
- Ye Feng
- Chinese Academy of Agriculture Sciences, Changchun Veterinary Research Institute, Changchun, China.,State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China
| | - Yuyang Wang
- Chinese Academy of Agriculture Sciences, Changchun Veterinary Research Institute, Changchun, China.,Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Hada
- Centre for Animal Disease Control and Prevention of Xilin Gol League, Xilin Gol League, China
| | - Deijide
- Centre for Animal Disease Control and Prevention of Xilin Gol League, Xilin Gol League, China
| | - Gaosuyilatu
- Center for Animal Disease Control and Prevention of Sonid Zuo Banner, Xilin Gol, China
| | - Xin Li
- Center for Animal Disease Control and Prevention of Wulatehouqi Banner, Bayannaoer, China
| | - Zemin Xu
- Forestry and Grassland Administration of Zhenglan Banner, Xilin Gol, China
| | - Hasibagen
- Forestry and Grassland Administration of Zhenglan Banner, Xilin Gol, China
| | - Amur Bulage
- Center for Animal Disease Control and Prevention of Ordos, Ordos, China
| | - Linchuan Li
- Center for Animal Disease Control and Prevention of Inner Mongolia, Hohhot, China
| | - Sarula
- Center for Animal Disease Control and Prevention of Inner Mongolia, Hohhot, China
| | - Yu Guo
- Center for Animal Disease Control and Prevention of Inner Mongolia, Hohhot, China
| | - Jihong Ma
- China Animal Disease Control Center, Beijing, China
| | - Zhanying Kou
- China Animal Disease Control Center, Beijing, China
| | - Sheng Sun
- Chinese Academy of Agriculture Sciences, Changchun Veterinary Research Institute, Changchun, China
| | - Liang Zhang
- Chinese Academy of Agriculture Sciences, Changchun Veterinary Research Institute, Changchun, China
| | - Tingfang Liu
- Chinese Academy of Agriculture Sciences, Changchun Veterinary Research Institute, Changchun, China
| | - Weidi Xu
- Chinese Academy of Agriculture Sciences, Changchun Veterinary Research Institute, Changchun, China
| | - Huachao Feng
- Chinese Academy of Agriculture Sciences, Changchun Veterinary Research Institute, Changchun, China
| | - Zihan Zhao
- Chinese Academy of Agriculture Sciences, Changchun Veterinary Research Institute, Changchun, China
| | - Zhongzhong Tu
- Chinese Academy of Agriculture Sciences, Changchun Veterinary Research Institute, Changchun, China
| | - Yan Liu
- Chinese Academy of Agriculture Sciences, Changchun Veterinary Research Institute, Changchun, China
| | - Changchun Tu
- Chinese Academy of Agriculture Sciences, Changchun Veterinary Research Institute, Changchun, China
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Chen N, Chen Q, Zhang Y, Zhu M, Yin W, Mu D, Li Y, Chen Y, Deng Y, Tang X. Assessing Impacting Factors of Dog Owners' Adoption of Dog Vaccination Against Rabies: A Cross-sectional Survey in Rural Areas - Guangxi Zhuang Autonomous Region, China, 2021. China CDC Wkly 2021; 3:883-888. [PMID: 34733576 PMCID: PMC8545601 DOI: 10.46234/ccdcw2021.218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2021] [Accepted: 10/08/2021] [Indexed: 12/03/2022] Open
Abstract
What is already known about this topic? Rabies is fatal while preventable. More than 99% of human rabies cases were caused by dog bites worldwide. Mass dog vaccination could interrupt dog-mediated rabies if achieving and maintaining a minimum coverage rate of 70%. What does this report contribute? The results of this study show that roughly 23.7% of households owned dogs in Guangxi Zhuang Autonomous Region, China but only about 19.1% of these households reported having their dogs vaccinated. Possible positive factors were injury history of dog bites, awareness of the necessity, and policy help for the costs of dog vaccination, but negative factors were negative attitude and inaccessibility. What are the implications for public health practices? Much more effort should be made to improve dog vaccination coverage in rural areas in Guangxi Zhuang Autonomous Region, China. Well-designed free mass vaccination campaigns with more accessibility and awareness campaigns are important to improve coverage.
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Affiliation(s)
- Ning Chen
- School of Public Health, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region, China
| | - Qiulan Chen
- Division of Infectious Disease, Key Laboratory of Surveillance and Early Warning on Infectious Disease, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Yanping Zhang
- Division of Infectious Disease, Key Laboratory of Surveillance and Early Warning on Infectious Disease, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Mantong Zhu
- School of Public Health, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region, China
| | - Wenwu Yin
- Division of Infectious Disease, Key Laboratory of Surveillance and Early Warning on Infectious Disease, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Di Mu
- Division of Infectious Disease, Key Laboratory of Surveillance and Early Warning on Infectious Disease, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Yu Li
- Division of Infectious Disease, Key Laboratory of Surveillance and Early Warning on Infectious Disease, Chinese Center for Disease Control and Prevention, Beijing, China
| | | | | | - Xianyan Tang
- School of Public Health, Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region, China
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Feng Y, Ma J, Sun S, Chi L, Kou Z, Tu C. Epidemiology of Animal Rabies - China, 2010-2020. China CDC Wkly 2021; 3:815-818. [PMID: 34594998 PMCID: PMC8477053 DOI: 10.46234/ccdcw2021.202] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Accepted: 09/20/2021] [Indexed: 11/14/2022] Open
Abstract
Introduction Rabies is a fatal zoonotic infectious disease that poses a serious threat to public health in China. Since 2005, a National Animal Rabies Surveillance System has been operating to understand the rabies situation in animals in China with a view to control and eventually eliminate dog-mediated human rabies. Methods From 2010, the brain tissues of dogs, livestock, and wild animals showing rabies-like clinical signs were collected and tested by the National Reference Laboratory (NRL) for Animal Rabies to analyze the epidemiological characteristics of rabies, including animal species, geographic distribution, and transmission sources. Over the same period, clinically suspected animal rabies cases were collected by Animal Disease Control Centers through the National Animal Disease Monitoring Information Platform (NADMIP) and then reported in the Veterinary Bulletin. Results During 2010-2020, 170 of 212 suspected animal rabies cases were submitted to and confirmed by NRL as rabies virus-positive. Of these confirmed cases dogs, especially free-roaming and ownerless dogs in rural areas, were major transmission hosts (71/170). A total of 51 infected dogs attacked humans with 45 biting more than one person. The dog cases were reported all year round, but with significantly more in spring and summer. The majority of livestock rabies cases (70/80) being caused by rabid wild foxes in Xinjiang and Inner Mongolia revealed that foxes play a pivotal role in animal rabies epizootics in the north and northwest of the country. Conclusion Dogs were the main transmission sources of rabies in China, and along with the recent increase of rabies in foxes and other wildlife, presented an increasing threat to livestock and public health.
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Affiliation(s)
- Ye Feng
- Changchun Veterinary Research Institute, Chinese Academy of Agriculture Sciences, Changchun, Jilin, China
| | - Jihong Ma
- China Animal Disease Control Center, Beijing, China
| | - Sheng Sun
- Changchun Veterinary Research Institute, Chinese Academy of Agriculture Sciences, Changchun, Jilin, China
| | - Lijuan Chi
- China Animal Disease Control Center, Beijing, China
| | - Zhanying Kou
- China Animal Disease Control Center, Beijing, China
| | - Changchun Tu
- Changchun Veterinary Research Institute, Chinese Academy of Agriculture Sciences, Changchun, Jilin, China
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6
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Yin W, Fu ZF, Gao GF. Progress and Prospects of Dog-Mediated Rabies Elimination in China. China CDC Wkly 2021; 3:831-834. [PMID: 34595002 PMCID: PMC8477050 DOI: 10.46234/ccdcw2021.205] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 09/22/2021] [Indexed: 11/14/2022] Open
Affiliation(s)
- Wenwu Yin
- Division of Infectious Disease, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Zhen F Fu
- Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, GA 30602; State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, Hubei, China
| | - George F Gao
- Chinese Center for Disease Control and Prevention, Beijing, China
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