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Bai Z, Wei Z, Zhu S, He G, Wang H, Chen G. Nitrene-mediated glycosylation with thioglycoside donors under metal catalysis. SCIENCE ADVANCES 2025; 11:eadu7747. [PMID: 39982987 PMCID: PMC11844731 DOI: 10.1126/sciadv.adu7747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2024] [Accepted: 01/21/2025] [Indexed: 02/23/2025]
Abstract
Glycosylation chemistry plays a pivotal role in glycoscience. Recent substantial developments have poised the field to address emerging challenges related to sustainability, cost efficiency, and robust applicability in complex substrate settings. The transition from stoichiometric activation to metal-catalyzed methods promises enhanced chemoselectivity and greater precision in controlling glycosidic bond breakage and formation, key to overcoming existing obstacles. Here, we report a nitrene-mediated glycosylation strategy using regular aryl sulfide glycosyl donors and easily accessible 3-methyl dioxazolone as an activator under the catalysis of iron or ruthenium. The iron-catalyzed system demonstrates exceptional catalytic reactivity, requiring as little as 0.1 mole % of catalyst at room temperature, and works well for complex peptide substrates. The ruthenium-catalyzed system can accommodate acid-sensitive functional groups and challenging low-reactivity acceptors. Mechanistic investigations have unveiled unusual multistep pathways involving sulfur imidation of sulfide donors via nitrene transfer and sulfur-to-oxygen rearrangement of N-acyl sulfilimines for the nitrene-mediated activation of sulfide donors.
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Affiliation(s)
- Ziqian Bai
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Zenghui Wei
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Shiyang Zhu
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Gang He
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Hao Wang
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
- Frontiers Science Center for New Organic Matter, Nankai University, Tianjin 300071, China
| | - Gong Chen
- State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
- Frontiers Science Center for New Organic Matter, Nankai University, Tianjin 300071, China
- Haihe Laboratory of Sustainable Chemical Transformations, Tianjin 300192, China
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Dey S, Dwivedi S, Giri D, Sau A. Benzene-1,3-disulfonyl Fluoride Mediated Synthesis of Glycosyl Fluorides from Glycosyl Hemiacetals. Org Lett 2024; 26:10351-10355. [PMID: 39570800 DOI: 10.1021/acs.orglett.4c03968] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2024]
Abstract
We developed an efficient method for synthesizing glycosyl fluorides from glycosyl hemiacetals using benzene-1,3-disulfonyl fluoride (S2) as the fluorinating agent in combination with the base DBU (1,8-diazabicyclo[5.4.0]undec-7-ene) under mild conditions. This approach enabled the successful synthesis of 17 glycosyl fluorides with various functional groups, including disaccharides and deoxysulfates, with yields of up to 99%. The utility of these synthesized glycosyl fluorides was further demonstrated in the synthesis of important O- and C-glycosides.
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Affiliation(s)
- Soumyadip Dey
- Department of Chemistry, Indian Institute of Technology Hyderabad, Kandi-502 284, Sangareddy, Telangana, India
| | - Shubhi Dwivedi
- Department of Chemistry, Indian Institute of Technology Hyderabad, Kandi-502 284, Sangareddy, Telangana, India
| | - Debabrata Giri
- Department of Chemistry, Indian Institute of Technology Hyderabad, Kandi-502 284, Sangareddy, Telangana, India
| | - Abhijit Sau
- Department of Chemistry, Indian Institute of Technology Hyderabad, Kandi-502 284, Sangareddy, Telangana, India
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3
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Gao K, Qin Y, Liu S, Wang L, Xing R, Yu H, Chen X, Li P. A review of the preparation, derivatization and functions of glucosamine and N-acetyl-glucosamine from chitin. CARBOHYDRATE POLYMER TECHNOLOGIES AND APPLICATIONS 2023. [DOI: 10.1016/j.carpta.2023.100296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2023] Open
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See NW, Xu X, Ferro V. An Improved Protocol for the Stereoselective Synthesis of β-d-Glycosyl Fluorides from 2- O-Acyl Thioglycosides. J Org Chem 2022; 87:14230-14240. [PMID: 36222442 DOI: 10.1021/acs.joc.2c01748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
A safe and operationally simple protocol for the preparation of β-d-glycosyl fluorides is presented. We demonstrate that a precise combination of XtalFluor-M, N-bromosuccinimide, and Et3N·3HF can mediate facile, high-yielding, and diastereoselective conversions of 2-O-acyl thioglycosides to β-d- and other 1,2-trans glycosyl fluorides. The key roles of these reagents are dissected in this work, as is the impact of their interplay on the fluorination stereoselectivity.
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Affiliation(s)
- Nicholas W See
- School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD 4072, Australia
| | - Xiaowen Xu
- School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD 4072, Australia
| | - Vito Ferro
- School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD 4072, Australia
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Manna T, Misra AK. On-water synthesis of glycosyl selenocyanate derivatives and their application in the metal free organocatalytic preparation of nonglycosidic selenium linked pseudodisaccharide derivatives. RSC Adv 2021; 11:10902-10911. [PMID: 35423588 PMCID: PMC8695869 DOI: 10.1039/d1ra00711d] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 03/02/2021] [Indexed: 12/23/2022] Open
Abstract
Glycosyl selenocyanate derivatives were prepared in very good yield by the treatment of glycosyl halide or triflate derivatives with potassium selenocyanate in water. A variety of selenium linked pseudodisaccharide derivatives were prepared in excellent yield using glycosyl selenocyanates as stable building blocks in the presence of hydrazine hydrate under metal-free organocatalytic reaction conditions.
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Affiliation(s)
- Tapasi Manna
- Division of Molecular Medicine, Bose Institute P-1/12, C.I.T. Scheme VII M Kolkata 700054 India +91-33-2355-3886
| | - Anup Kumar Misra
- Division of Molecular Medicine, Bose Institute P-1/12, C.I.T. Scheme VII M Kolkata 700054 India +91-33-2355-3886
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7
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Zhu M, Alami M, Messaoudi S. Room-Temperature Pd-Catalyzed Synthesis of 1-(Hetero)aryl Selenoglycosides. Org Lett 2020; 22:6584-6589. [PMID: 32806176 DOI: 10.1021/acs.orglett.0c02352] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
A general protocol for functionalization of an anomeric selonate anion at room temperature has been reported. By using the PdG3 XantPhos catalyst, the cross-coupling between the in situ-generated glycosyl selenolate and a broad range of (hetero)aryl and alkenyl iodides furnished a series of functionalized selenoglycosides in excellent yields with perfect control of the anomeric configuration.
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Affiliation(s)
- Mingxiang Zhu
- BioCIS, Univ. Paris-Sud, CNRS, University Paris-Saclay, 92290 Châtenay-Malabry, France
| | - Mouad Alami
- BioCIS, Univ. Paris-Sud, CNRS, University Paris-Saclay, 92290 Châtenay-Malabry, France
| | - Samir Messaoudi
- BioCIS, Univ. Paris-Sud, CNRS, University Paris-Saclay, 92290 Châtenay-Malabry, France
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Mohammadkhani L, Heravi MM. XtalFluor-E: A useful and versatile reagent in organic transformations. J Fluor Chem 2019. [DOI: 10.1016/j.jfluchem.2019.06.006] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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Abstract
The development of glycobiology relies on the sources of particular oligosaccharides in their purest forms. As the isolation of the oligosaccharide structures from natural sources is not a reliable option for providing samples with homogeneity, chemical means become pertinent. The growing demand for diverse oligosaccharide structures has prompted the advancement of chemical strategies to stitch sugar molecules with precise stereo- and regioselectivity through the formation of glycosidic bonds. This Review will focus on the key developments towards chemical O-glycosylations in the current century. Synthesis of novel glycosyl donors and acceptors and their unique activation for successful glycosylation are discussed. This Review concludes with a summary of recent developments and comments on future prospects.
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Affiliation(s)
- Rituparna Das
- Department of Chemical SciencesIndian Institute of Science Education and Research (IISER) KolkataMohanpurNadia741246India
| | - Balaram Mukhopadhyay
- Department of Chemical SciencesIndian Institute of Science Education and Research (IISER) KolkataMohanpurNadia741246India
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McDonagh AW, Mahon MF, Murphy PV. Lewis Acid Induced Anomerization of Se-Glycosides. Application to Synthesis of α-Se-GalCer. Org Lett 2016; 18:552-5. [DOI: 10.1021/acs.orglett.5b03591] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Anthony W. McDonagh
- School
of Chemistry, National University of Ireland Galway, University Road, Galway, Ireland
| | - Mary F. Mahon
- Department
of Chemistry, University of Bath, Claverton Down, Bath BA2
7AY, United Kingdom
| | - Paul V. Murphy
- School
of Chemistry, National University of Ireland Galway, University Road, Galway, Ireland
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Kunigami M, Hara S. Synthesis of glycosyl fluorides from (phenylthio)glycosides using IF5-pyridine-HF. Carbohydr Res 2015; 417:78-80. [PMID: 26432611 DOI: 10.1016/j.carres.2015.08.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2015] [Revised: 06/15/2015] [Accepted: 08/12/2015] [Indexed: 10/23/2022]
Abstract
IF5-pyridine-HF, an air- and moisture-stable fluorinating reagent, was applied to the synthesis of glycosyl fluorides from (phenylthio)glycosides. Common protecting groups of alcohol and diol can tolerate the reaction conditions performed, and therefore, the present method is applicable to the synthesis of various glycosyl fluorides.
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Affiliation(s)
- Masataka Kunigami
- Graduate School of Engineering, Hokkaido University, Sapporo 060-8628, Japan
| | - Shoji Hara
- Graduate School of Engineering, Hokkaido University, Sapporo 060-8628, Japan.
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Champagne PA, Desroches J, Hamel JD, Vandamme M, Paquin JF. Monofluorination of Organic Compounds: 10 Years of Innovation. Chem Rev 2015; 115:9073-174. [PMID: 25854146 DOI: 10.1021/cr500706a] [Citation(s) in RCA: 695] [Impact Index Per Article: 69.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Pier Alexandre Champagne
- Canada Research Chair in Organic and Medicinal Chemistry, CGCC, PROTEO, Département de Chimie, Université Laval , 1045 Avenue de la Médecine, Québec (QC), Canada G1V 0A6
| | - Justine Desroches
- Canada Research Chair in Organic and Medicinal Chemistry, CGCC, PROTEO, Département de Chimie, Université Laval , 1045 Avenue de la Médecine, Québec (QC), Canada G1V 0A6
| | - Jean-Denys Hamel
- Canada Research Chair in Organic and Medicinal Chemistry, CGCC, PROTEO, Département de Chimie, Université Laval , 1045 Avenue de la Médecine, Québec (QC), Canada G1V 0A6
| | - Mathilde Vandamme
- Canada Research Chair in Organic and Medicinal Chemistry, CGCC, PROTEO, Département de Chimie, Université Laval , 1045 Avenue de la Médecine, Québec (QC), Canada G1V 0A6
| | - Jean-François Paquin
- Canada Research Chair in Organic and Medicinal Chemistry, CGCC, PROTEO, Département de Chimie, Université Laval , 1045 Avenue de la Médecine, Québec (QC), Canada G1V 0A6
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14
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Cresswell AJ, Davies SG, Roberts PM, Thomson JE. Beyond the Balz-Schiemann reaction: the utility of tetrafluoroborates and boron trifluoride as nucleophilic fluoride sources. Chem Rev 2014; 115:566-611. [PMID: 25084541 DOI: 10.1021/cr5001805] [Citation(s) in RCA: 130] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Alexander J Cresswell
- Department of Chemistry, Chemistry Research Laboratory, University of Oxford , Mansfield Road, Oxford OX1 3TA, United Kingdom
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Rational design of a glycosynthase by the crystal structure of β-galactosidase from Bacillus circulans (BgaC) and its use for the synthesis of N-acetyllactosamine type 1 glycan structures. J Biotechnol 2014; 191:78-85. [PMID: 25034434 DOI: 10.1016/j.jbiotec.2014.07.003] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2014] [Revised: 07/01/2014] [Accepted: 07/04/2014] [Indexed: 11/20/2022]
Abstract
The crystal structure of β-galactosidase from Bacillus circulans (BgaC) was determined at 1.8Å resolution. The overall structure of BgaC consists of three distinct domains, which are the catalytic domain with a TIM-barrel structure and two all-β domains (ABDs). The main-chain fold and steric configurations of the acidic and aromatic residues at the active site were very similar to those of Streptococcus pneumoniae β(1,3)-galactosidase BgaC in complex with galactose. The structure of BgaC was used for the rational design of a glycosynthase. BgaC belongs to the glycoside hydrolase family 35. The essential nucleophilic amino acid residue has been identified as glutamic acid at position 233 by site-directed mutagenesis. Construction of the active site mutant BgaC-Glu233Gly gave rise to a galactosynthase transferring the sugar moiety from α-d-galactopyranosyl fluoride (αGalF) to different β-linked N-acetylglucosamine acceptor substrates in good yield (40-90%) with a remarkably stable product formation. Enzymatic syntheses with BgaC-Glu233Gly afforded the stereo- and regioselective synthesis of β1-3-linked key galactosides like galacto-N-biose or lacto-N-biose.
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