Analysis of a mathematical model for COVID-19 population dynamics in Lagos, Nigeria

A conformable fractional finite difference method for modified mathematical modeling of SAR-CoV-2 (COVID-19) disease

In this research, the ongoing COVID-19 disease by considering the vaccination strategies into mathematical models is discussed. A modified and comprehensive mathematical model that captures the complex relationships between various population compartments, including susceptible (Sα), exposed (Eα), infected (Uα), quarantined (Qα), vaccinated (Vα), and recovered (Rα) individuals. Using conformable derivatives, a system of equations that precisely captures the complex interconnections inside the COVID-19 transmission. The basic reproduction number (R0), which is an essential indicator of disease transmission, is the subject of investigation calculating using the next-generation matrix approach. We also compute the R0 sensitivity indices, which offer important information about the relative influence of various factors on the overall dynamics. Local stability and global stability of R0 have been proved at a disease-free equilibrium point. By designing the finite difference approach of the conformable fractional derivative using the Taylor series. The present methodology provides us highly accurate convergence of the obtained solution. Present research fills research addresses the understanding gap between conceptual frameworks and real-world implementations, demonstrating the vaccination therapy's significant possibilities in the struggle against the COVID-19 pandemic.

A vaccination-based COVID-19 model: Analysis and prediction using Hamiltonian Monte Carlo

Compartmental models have emerged as robust computational frameworks and have yielded remarkable success in the fight against COVID-19. This study proposes a vaccination-based compartmental model for COVID-19 transmission dynamics. The model reflects the specific stages of COVID-19 infection and integrates a vaccination strategy, allowing for a comprehensive analysis of how vaccination rates influence the disease spread. We fit this model to daily confirmed COVID-19 cases in Tennessee, United States of America (USA), from June 4 to November 26, 2021, in a Bayesian inference approach using the Hamiltonian Monte Carlo (HMC) algorithm. First, excluding vaccination dynamics from the model, we estimated key epidemiological parameters like infection, recovery, and disease-induced death rates. This analysis yielded a basic reproduction number (R 0 ) of 1.5. Second, we incorporated vaccination dynamics and estimated the vaccination rate for three vaccines: 0.0051 per day for both Pfizer and Moderna and 0.0059 per day for Janssen. The fitted curves show reductions in the epidemic peak for all three vaccines. Pfizer and Moderna vaccines bring the peak down from 8,029 infected cases to 5,616 infected cases, while the Janssen vaccine reduces it, to 6,493 infected cases. Simulations of the model by varying the vaccination rate and vaccine efficacy were performed. A highly effective vaccine (95% efficacy) with a daily vaccination rate of 0.006 halved COVID-19 infections, reducing cases from 8,029 to around 4,000. The results also show that the model's prediction accuracy for new observations improves with the number of observed data used to train the model.

Analyzing the worldwide progression of COVID-19 cases and deaths using nonlinear mixed-effects model

COVID-19 is an infectious disease that continues to spread worldwide. A precise estimation of the cases and deaths due to COVID-19 would allow for appropriate consideration of healthcare resource allocation, public health response, and vaccination and economic planning, to minimize social damage. In this study, we analyzed the progression of COVID-19 cases and deaths until January 2022 in 156 countries using a nonlinear mixed-effect model based on the SIR framework. Given the major changes in mortality from infection, risk of re-infection and social responses, the analysis was limited to the period before the emergence of the Omicron variant. The impact of infection prevention measures in various countries was assessed, with a specific focus on estimating the effectiveness of lockdowns, where the effect was assumed to change over time. By accounting for excess mortality, our analysis allowed the estimation of unreported cases and deaths, and thus providing a more comprehensive understanding of the impact of pandemic. In the analysis, we identified gross domestic product (GDP), proportion of people aged 65 years or older, latitude of the capital city on transmissibility of infection, and city population and cardiovascular death rate on mortality rate as significant influencing factors. Furthermore, the differences in transmissibility and mortality rates by variants and the effect of vaccination on the mortality rate were assessed. The transmissibility has increased by odds ratios of 1.2 to 1.4 in Beta, Gamma, and Delta variants; mortality rate has increased by odds ratios of 1.7, 2.2, and 1.4 in Beta, Gamma, and Delta variants, respectively; and vaccination decreased the mortality rate by odds ratios of 0.4 and 0.1 in Delta and other variants, respectively.

Designing a novel fractional order mathematical model for COVID-19 incorporating lockdown measures

This research focuses on the design of a novel fractional model for simulating the ongoing spread of the coronavirus (COVID-19). The model is composed of multiple categories named susceptible [Formula: see text], infected [Formula: see text], treated [Formula: see text], and recovered [Formula: see text] with the susceptible category further divided into two subcategories [Formula: see text] and [Formula: see text]. In light of the need for restrictive measures such as mandatory masks and social distancing to control the virus, the study of the dynamics and spread of the virus is an important topic. In addition, we investigate the positivity of the solution and its boundedness to ensure positive results. Furthermore, equilibrium points for the system are determined, and a stability analysis is conducted. Additionally, this study employs the analytical technique of the Laplace Adomian decomposition method (LADM) to simulate the different compartments of the model, taking into account various scenarios. The Laplace transform is used to convert the nonlinear resulting equations into an equivalent linear form, and the Adomian polynomials are utilized to treat the nonlinear terms. Solving this set of equations yields the solution for the state variables. To further assess the dynamics of the model, numerical simulations are conducted and compared with the results from LADM. Additionally, a comparison with real data from Italy is demonstrated, which shows a perfect agreement between the obtained data using the numerical and Laplace Adomian techniques. The graphical simulation is employed to investigate the effect of fractional-order terms, and an analysis of parameters is done to observe how quickly stabilization can be achieved with or without confinement rules. It is demonstrated that if no confinement rules are applied, it will take longer for stabilization after more people have been affected; however, if strict measures and a low contact rate are implemented, stabilization can be reached sooner.

A fractional-order mathematical model for malaria and COVID-19 co-infection dynamics

This study proposes a fractional-order mathematical model for malaria and COVID-19 co-infection using the Atangana-Baleanu Derivative. We explain the various stages of the diseases together in humans and mosquitoes, and we also establish the existence and uniqueness of the fractional order co-infection model solution using the fixed point theorem. We conduct the qualitative analysis along with an epidemic indicator, the basic reproduction number R0 of this model. We investigate the global stability at the disease and endemic free equilibrium of the malaria-only, COVID-19-only, and co-infection models. We run different simulations of the fractional-order co-infection model using a two-step Lagrange interpolation polynomial approximate method with the aid of the Maple software package. The results reveal that reducing the risk of malaria and COVID-19 by taking preventive measures will reduce the risk factor for getting COVID-19 after contracting malaria and will also reduce the risk factor for getting malaria after contracting COVID-19 even to the point of extinction.

A bifurcation analysis and model of Covid-19 transmission dynamics with post-vaccination infection impact

SARS COV-2 (Covid-19) has imposed a monumental socio-economic burden worldwide, and its impact still lingers. We propose a deterministic model to describe the transmission dynamics of Covid-19, emphasizing the effects of vaccination on the prevailing epidemic. The proposed model incorporates current information on Covid-19, such as reinfection, waning of immunity derived from the vaccine, and infectiousness of the pre-symptomatic individuals into the disease dynamics. Moreover, the model analysis reveals that it exhibits the phenomenon of backward bifurcation, thus suggesting that driving the model reproduction number below unity may not suffice to drive the epidemic toward extinction. The model is fitted to real-life data to estimate values for some of the unknown parameters. In addition, the model epidemic threshold and equilibria are determined while the criteria for the stability of each equilibrium solution are established using the Metzler approach. A sensitivity analysis of the model is performed based on the Latin Hypercube Sampling (LHS) and Partial Rank Correlation Coefficients (PRCCs) approaches to illustrate the impact of the various model parameters and explore the dependency of control reproduction number on its constituents parameters, which invariably gives insight on what needs to be done to contain the pandemic effectively. The foregoing notwithstanding, the contour plots of the control reproduction number concerning some of the salient parameters indicate that increasing vaccination coverage and decreasing vaccine waning rate would remarkably reduce the value of the reproduction number below unity, thus facilitating the possible elimination of the disease from the population. Finally, the model is solved numerically and simulated for different scenarios of disease outbreaks with the findings discussed.

Analysis of a non-integer order mathematical model for double strains of dengue and COVID-19 co-circulation using an efficient finite-difference method

An efficient finite difference approach is adopted to analyze the solution of a novel fractional-order mathematical model to control the co-circulation of double strains of dengue and COVID-19. The model is primarily built on a non-integer Caputo fractional derivative. The famous fixed-point theorem developed by Banach is employed to ensure that the solution of the formulated model exists and is ultimately unique. The model is examined for stability around the infection-free equilibrium point analysis, and it was observed that it is stable (asymptotically) when the maximum reproduction number is strictly below unity. Furthermore, global stability analysis of the disease-present equilibrium is conducted via the direct Lyapunov method. The non-standard finite difference (NSFD) approach is adopted to solve the formulated model. Furthermore, numerical experiments on the model reveal that the trajectories of the infected compartments converge to the disease-present equilibrium when the basic reproduction number ([Formula: see text]) is greater than one and disease-free equilibrium when the basic reproduction number is less than one respectively. This convergence is independent of the fractional orders and assumed initial conditions. The paper equally emphasized the outcome of altering the fractional orders, infection and recovery rates on the disease patterns. Similarly, we also remarked the importance of some key control measures to curtail the co-spread of double strains of dengue and COVID-19.

The role of delay in vaccination rate on Covid-19

The role of vaccination in tackling Covid-19 and the potential consequences of a time delay in vaccination rate are discussed. This study presents a mathematical model that incorporates the rate of vaccination and parameters related to the presence and absence of time delay in the context of Covid-19. We conducted a study on the global dynamics of a Covid-19 outbreak model, which incorporates a vaccinated population and a time delay parameter. Our findings demonstrate the global stability of these models. Our observation indicates that lower vaccination rates are associated with an increase in the overall number of infected individuals. The stability of the corresponding time delay model is determined by the value of the time delay parameter. If the time delay parameter is less than the critical value at which the Hopf bifurcation occurs, the model is stable. The results are supported by numerical illustrations that have epidemiological relevance.

Modeling the dynamics of COVID-19 in the presence of Delta and Omicron variants with vaccination and non-pharmaceutical interventions

Since its inception in December 2019, many safe and effective vaccines have been invented and approved for use against COVID-19 along with various non-pharmaceutical interventions. But the emergence of numerous SARS-CoV-2 variants has put the effectiveness of these vaccines, and other intervention measures under threat. So it is important to understand the dynamics of COVID-19 in the presence of its variants of concern (VOC) in controlling the spread of the disease. To address these situations and to find a way out of this problem, a new mathematical model consisting of a system of non-linear differential equations considering the original COVID-19 strain with its two variants of concern (Delta and Omicron) has been proposed and formulated in this paper. We then analyzed the proposed model to study the transmission dynamics of this multi-strain model and to investigate the consequences of the emergence of multiple new SARS-CoV-2 variants which are more transmissible than the previous ones. The control reproduction number, an important threshold parameter, is then calculated using the next-generation matrix method. Further, we presented the discussion about the stability of the model equilibrium. It is shown that the disease-free equilibrium (DFE) of the model is locally asymptotic stable when the control reproduction is less than unity. It is also shown that the model has a unique endemic equilibrium (EEP) which is locally asymptotic stable when the control reproduction number is greater than unity. Using the Center Manifold theory it is shown that the model also exhibits the backward bifurcation phenomenon when the control reproduction number is less than unity. Again without considering the re-infection of the recovered individuals, it is proved that the disease-free equilibrium is globally asymptotically stable when the reproduction threshold is less than unity. Finally, numerical simulations are performed to verify the analytic results and to show the impact of multiple new SARS-CoV-2 variants in the population which are more contagious than the previous variants. Global uncertainty and sensitivity analysis has been done to identify which parameters have a greater impact on disease dynamics and control disease transmission. Numerical simulation suggests that the emergence of new variants of concern increases COVID-19 infection and related deaths. It also reveals that a combination of non-pharmaceutical interventions with vaccination programs of new more effective vaccines should be continued to control the disease outbreak. This study also suggests that more doses of vaccine should provide to combat new and deadly variants like Delta and Omicron.

Role of immigration and emigration on the spread of COVID-19 in a multipatch environment: a case study of India

Human mobility has played a critical role in the spread of COVID-19. The understanding of mobility helps in getting information on the acceleration or control of the spread of disease. The COVID-19 virus has been spreading among several locations despite all the best efforts related to its isolation. To comprehend this, a multi-patch mathematical model of COVID-19 is proposed and analysed in this work, where-in limited medical resources, quarantining, and inhibitory behaviour of healthy individuals are incorporated into the model. Furthermore, as an example, the impact of mobility in a three-patch model is studied considering the three worst-hit states of India, i.e. Kerala, Maharashtra and Tamil Nadu, as three patches. Key parameters and the basic reproduction number are estimated from the available data. Through results and analyses, it is seen that Kerala has a higher effective contact rate and has the highest prevalence. Moreover, if Kerala is isolated from Maharashtra or Tamil Nadu, the number of active cases will increase in Kerala but reduce in the other two states. Our findings indicate that the number of active cases will decrease in the high prevalence state and increase in the lower prevalence states if the emigration rate is higher than the immigration rate in the high prevalence state. Overall, proper travel restrictions are to be implemented to reduce or control the spread of disease from the high-prevalence state to other states with lower prevalence rates.

Spatial-temporal diffusion model of aggregated infectious diseases based on population life characteristics: a case study of COVID-19

Outbreaks of infectious diseases pose significant threats to human life, and countries around the world need to implement more precise prevention and control measures to contain the spread of viruses. In this study, we propose a spatial-temporal diffusion model of infectious diseases under a discrete grid, based on the time series prediction of infectious diseases, to model the diffusion process of viruses in population. This model uses the estimated outbreak origin as the center of transmission, employing a tree-like structure of daily human travel to generalize the process of viral spread within the population. By incorporating diverse data, it simulates the congregation of people, thus quantifying the flow weights between grids for population movement. The model is validated with some Chinese cities with COVID-19 outbreaks, and the results show that the outbreak point estimation method could better estimate the virus transmission center of the epidemic. The estimated location of the outbreak point in Xi'an was only 0.965 km different from the actual one, and the results were more satisfactory. The spatiotemporal diffusion model for infectious diseases simulates daily newly infected areas, which effectively cover the actual patient infection zones on the same day. During the mid-stage of viral transmission, the coverage rate can increase to over 90%, compared to related research, this method has improved simulation accuracy by approximately 18%. This study can provide technical support for epidemic prevention and control, and assist decision-makers in developing more scientific and efficient epidemic prevention and control policies.

Did COVID-19 enlarge spatial disparities in population dynamics? A comparative, multivariate approach for Italy

A short-term issue that has been occasionally investigated in the current literature is if (and, eventually, how) population dynamics (directly or indirectly) driven by COVID-19 pandemic have contributed to enlarge regional divides in specific demographic processes and dimensions. To verify this assumption, our study run an exploratory multivariate analysis of ten indicators representative of different demographic phenomena (fertility, mortality, nuptiality, internal and international migration) and the related population outcomes (natural balance, migration balance, total growth). We developed a descriptive analysis of the statistical distribution of the ten demographic indicators using eight metrics that assess formation (and consolidation) of spatial divides, controlling for shifts over time in both central tendency, dispersion, and distributional shape regimes. All indicators were made available over 20 years (2002-2021) at a relatively detailed spatial scale (107 NUTS-3 provinces) in Italy. COVID-19 pandemic exerted an impact on Italian population because of intrinsic (e.g. a particularly older population age structure compared with other advanced economies) and extrinsic (e.g. the early start of the pandemic spread compared with the neighboring European countries) factors. For such reasons, Italy may represent a sort of 'worst' demographic scenario for other countries affected by COVID-19 and the results of this empirical study can be informative when delineating policy measures (with both economic and social impact) able to mitigate the effect of pandemics on demographic balance and improve the adaptation capacity of local societies to future pandemic's crises.

Modeling SARS-CoV-2 and HBV co-dynamics with optimal control

Clinical reports have shown that chronic hepatitis B virus (HBV) patients co-infected with SARS-CoV-2 have a higher risk of complications with liver disease than patients without SARS-CoV-2. In this work, a co-dynamical model is designed for SARS-CoV-2 and HBV which incorporates incident infection with the dual diseases. Existence of boundary and co-existence endemic equilibria are proved. The occurrence of backward bifurcation, in the absence and presence of incident co-infection, is investigated through the proposed model. It is noted that in the absence of incident co-infection, backward bifurcation is not observed in the model. However, incident co-infection triggers this phenomenon. For a special case of the study, the disease free and endemic equilibria are shown to be globally asymptotically stable. To contain the spread of both infections in case of an endemic situation, the time dependent controls are incorporated in the model. Also, global sensitivity analysis is carried out by using appropriate ranges of the parameter values which helps to assess their level of sensitivity with reference to the reproduction numbers and the infected components of the model. Finally, numerical assessment of the control system using various intervention strategies is performed, and reached at the conclusion that enhanced preventive efforts against incident co-infection could remarkably control the co-circulation of both SARS-CoV-2 and HBV.

Data suggested hospitalization as critical indicator of the severity of the COVID-19 pandemic, even at its early stages

COVID-19 has been spreading widely since January 2020, prompting the implementation of non-pharmaceutical interventions and vaccinations to prevent overwhelming the healthcare system. Our study models four waves of the epidemic in Munich over two years using a deterministic, biology-based mathematical model of SEIR type that incorporates both non-pharmaceutical interventions and vaccinations. We analyzed incidence and hospitalization data from Munich hospitals and used a two-step approach to fit the model parameters: first, we modeled incidence without hospitalization, and then we extended the model to include hospitalization compartments using the previous estimates as a starting point. For the first two waves, changes in key parameters, such as contact reduction and increasing vaccinations, were enough to represent the data. For wave three, the introduction of vaccination compartments was essential. In wave four, reducing contacts and increasing vaccinations were critical parameters for controlling infections. The importance of hospitalization data was highlighted, as it should have been included as a crucial parameter from the outset, along with incidence, to avoid miscommunication with the public. The emergence of milder variants like Omicron and a significant proportion of vaccinated people has made this fact even more evident.

Dynamics of a Fractional-Order Delayed Model of COVID-19 with Vaccination Efficacy

In this study, we provide a fractional-order mathematical model that considers the effect of vaccination on COVID-19 spread dynamics. The model accounts for the latent period of intervention strategies by incorporating a time delay τ. A basic reproduction number, R0, is determined for the model, and prerequisites for endemic equilibrium are discussed. The model’s endemic equilibrium point also exhibits local asymptotic stability (under certain conditions), and a Hopf bifurcation condition is established. Different scenarios of vaccination efficacy are simulated. As a result of the vaccination efforts, the number of deaths and those affected have decreased. COVID-19 may not be effectively controlled by vaccination alone. To control infections, several non-pharmacological interventions are necessary. Based on numerical simulations and fitting to real observations, the theoretical results are proven to be effective.

Mathematical modeling and investigation on the role of demography and contact patterns in social distancing measures effectiveness in COVID-19 dissemination

In this article, we investigate the importance of demography and contact patterns in determining the spread of COVID-19 and to the effectiveness of social distancing policies. We investigate these questions proposing an augmented epidemiological model with an age-structured model, with the population divided into susceptible (S), exposed (E), asymptomatic infectious (A), hospitalized (H), symptomatic infectious (I) and recovered individuals (R), to simulate COVID-19 dissemination. The simulations were carried out using six combinations of four types of isolation policies (work restrictions, isolation of the elderly, community distancing and school closures) and four representative fictitious countries generated over alternative demographic transition stage patterns (aged developed, developed, developing and least developed countries). We concluded that the basic reproduction number depends on the age profile and the contact patterns. The aged developed country had the lowest basic reproduction number ($R0=1.74$) due to the low contact rate among individuals, followed by the least developed country ($R0=2.00$), the developing country ($R0=2.43$) and the developed country ($R0=2.64$). Because of these differences in the basic reproduction numbers, the same intervention policies had higher efficiencies in the aged and least developed countries. Of all intervention policies, the reduction in work contacts and community distancing were the ones that produced the highest decrease in the $R0$ value, prevalence, maximum hospitalization demand and fatality rate. The isolation of the elderly was more effective in the developed and aged developed countries. The school closure was the less effective intervention policy, though its effects were not negligible in the least developed and developing countries.

Mathematical Model of COVID-19 Pandemic with Double Dose Vaccination

This paper is concerned with the formulation and analysis of an epidemic model of COVID-19 governed by an eight-dimensional system of ordinary differential equations, by taking into account the first dose and the second dose of vaccinated individuals in the population. The developed model is analyzed and the threshold quantity known as the control reproduction number [Formula: see text] is obtained. We investigate the equilibrium stability of the system, and the COVID-free equilibrium is said to be locally asymptotically stable when the control reproduction number is less than unity, and unstable otherwise. Using the least-squares method, the model is calibrated based on the cumulative number of COVID-19 reported cases and available information about the mass vaccine administration in Malaysia between the 24th of February 2021 and February 2022. Following the model fitting and estimation of the parameter values, a global sensitivity analysis was performed by using the Partial Rank Correlation Coefficient (PRCC) to determine the most influential parameters on the threshold quantities. The result shows that the effective transmission rate [Formula: see text], the rate of first vaccine dose [Formula: see text], the second dose vaccination rate [Formula: see text] and the recovery rate due to the second dose of vaccination [Formula: see text] are the most influential of all the model parameters. We further investigate the impact of these parameters by performing a numerical simulation on the developed COVID-19 model. The result of the study shows that adhering to the preventive measures has a huge impact on reducing the spread of the disease in the population. Particularly, an increase in both the first and second dose vaccination rates reduces the number of infected individuals, thus reducing the disease burden in the population.

A new fractional mathematical model to study the impact of vaccination on COVID-19 outbreaks

This study proposes a new fractional mathematical model to study the impact of vaccination on COVID-19 outbreaks by categorizing infected people into non-vaccinated, first dose-vaccinated, and second dose-vaccinated groups and exploring the transmission dynamics of the disease outbreaks. We present a non-linear integer order mathematical model of COVID-19 dynamics and modify it by introducing Caputo fractional derivative operator. We start by proving the good state of the model and then calculating its reproduction number. The Caputo fractional-order model is discretized by applying a reliable numerical technique. The model is proven to be stable. The classical model is fitted to the corresponding cumulative number of daily reported cases during the vaccination regime in India between 01 August 2021 and 21 July 2022. We explore the sensitivities of the reproduction number with respect to the model parameters. It is shown that the effective transmission rate and the recovery rate of unvaccinated infected individuals are the most sensitive parameters that drive the transmission dynamics of the pandemic in the population. Numerical simulations are used to demonstrate the applicability of the proposed fractional mathematical model via the memory index at different values of 0 . 7 , 0 . 8 , 0 . 9 and 1. We discuss the epidemiological significance of the findings and provide perspectives on future health policy tendencies. For instance, efforts targeting a decrease in the transmission rate and an increase in the recovery rate of non-vaccinated infected individuals are required to ensure virus-free population. This can be achieved if the population strictly adhere to precautionary measures, and prompt and adequate treatment is provided for non-vaccinated infectious individuals. Also, given the ongoing community spread of COVID-19 in India and almost the pandemic-affected countries worldwide, the need to scale up the effort of mass vaccination policy cannot be overemphasized in order to reduce the number of unvaccinated infections with a view to halting the transmission dynamics of the disease in the population.

Decoding the double trouble: A mathematical modelling of co-infection dynamics of SARS-CoV-2 and influenza-like illness

After the detection of coronavirus disease 2019 (Covid-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Wuhan, Hubei Province, China in late December, the cases of Covid-19 have spiralled out around the globe. Due to the clinical similarity of Covid-19 with other flulike syndromes, patients are assayed for other pathogens of influenza like illness. There have been reported cases of co-infection amongst patients with Covid-19. Bacteria for example Streptococcus pneumoniae, Staphylococcus aureus, Klebsiella pneumoniae, Mycoplasma pneumoniae, Chlamydia pneumonia, Legionella pneumophila etc and viruses such as influenza, coronavirus, rhinovirus/enterovirus, parainfluenza, metapneumovirus, influenza B virus etc are identified as co-pathogens. In our current effort, we develop and analysed a compartmental based Ordinary Differential Equation (ODE) type mathematical model to understand the co-infection dynamics of Covid-19 and other influenza type illness. In this work we have incorporated the saturated treatment rate to take account of the impact of limited treatment resources to control the possible Covid-19 cases. As results, we formulate the basic reproduction number of the model system. Finally, we have performed numerical simulations of the co-infection model to examine the solutions in different zones of parameter space.

Stochastic Modeling and Forecasting of Covid-19 Deaths: Analysis for the Fifty States in the United States

In this work, we study and analyze the aggregate death counts of COVID-19 reported by the United States Centers for Disease Control and Prevention (CDC) for the fifty states in the United States. To do this, we derive a stochastic model describing the cumulative number of deaths reported daily by CDC from the first time Covid-19 death is recorded to June 20, 2021 in the United States, and provide a forecast for the death cases. The stochastic model derived in this work performs better than existing deterministic logistic models because it is able to capture irregularities in the sample path of the aggregate death counts. The probability distribution of the aggregate death counts is derived, analyzed, and used to estimate the count’s per capita initial growth rate, carrying capacity, and the expected value for each given day as at the time this research is conducted. Using this distribution, we estimate the expected first passage time when the aggregate death count is slowing down. Our result shows that the expected aggregate death count is slowing down in all states as at the time this analysis is conducted (June 2021). A formula for predicting the end of Covid-19 deaths is derived. The daily expected death count for each states is plotted as a function of time. The probability density function for the current day, together with the forecast and its confidence interval for the next four days, and the root mean square error for our simulation results are estimated.

Clinical effects of 2-DG drug restraining SARS-CoV-2 infection: A fractional order optimal control study

Fractional calculus is very convenient tool in modeling of an emergent infectious disease system comprising previous disease states, memory of disease patterns, profile of genetic variation etc. Significant complex behaviors of a disease system could be calibrated in a proficient manner through fractional order derivatives making the disease system more realistic than integer order model. In this study, a fractional order differential equation model is developed in micro level to gain perceptions regarding the effects of host immunological memory in dynamics of SARS-CoV-2 infection. Additionally, the possible optimal control of the infection with the help of an antiviral drug, viz. 2-DG, has been exemplified here. The fractional order optimal control would enable to employ the proper administration of the drug minimizing its systematic cost which will assist the health policy makers in generating better therapeutic measures against SARS-CoV-2 infection. Numerical simulations have advantages to visualize the dynamical effects of the immunological memory and optimal control inputs in the epidemic system.

A data-driven spatially-specific vaccine allocation framework for COVID-19

Although coronavirus disease 2019 (COVID-19) vaccines have been introduced, their allocation is a challenging problem. We propose a data-driven, spatially-specific vaccine allocation framework that aims to minimize the number of COVID-19-related deaths or infections. The framework combines a regional risk-level classification model solved by a self-organizing map neural network, a spatially-specific disease progression model, and a vaccine allocation model that considers vaccine production capacity. We use data obtained from Wuhan and 35 other cities in China from January 26 to February 11, 2020, to avoid the effects of intervention. Our results suggest that, in region-wise distribution of vaccines, they should be allocated first to the source region of the outbreak and then to the other regions in order of decreasing risk whether the outcome measure is the number of deaths or infections. This spatially-specific vaccine allocation policy significantly outperforms some current allocation policies.

Global Dynamics of SARS-CoV-2 Infection with Antibody Response and the Impact of Impulsive Drug Therapy

Mathematical modeling is crucial to investigating tthe ongoing coronavirus disease 2019 (COVID-19) pandemic. The primary target area of the SARS-CoV-2 virus is epithelial cells in the human lower respiratory tract. During this viral infection, infected cells can activate innate and adaptive immune responses to viral infection. Immune response in COVID-19 infection can lead to longer recovery time and more severe secondary complications. We formulate a micro-level mathematical model by incorporating a saturation term for SARS-CoV-2-infected epithelial cell loss reliant on infected cell levels. Forward and backward bifurcation between disease-free and endemic equilibrium points have been analyzed. Global stability of both disease-free and endemic equilibrium is provided. We have seen that the disease-free equilibrium is globally stable for R0<1, and endemic equilibrium exists and is globally stable for R0>1. Impulsive application of drug dosing has been applied for the treatment of COVID-19 patients. Additionally, the dynamics of the impulsive system are discussed when a patient takes drug holidays. Numerical simulations support the analytical findings and the dynamical regimes in the systems.

Understanding the Role of Environmental Transmission on COVID-19 Herd Immunity and Invasion Potential

COVID-19 is caused by the SARS-CoV-2 virus, which is mainly transmitted directly between humans. However, it is observed that this disease can also be transmitted through an indirect route via environmental fomites. The development of appropriate and effective vaccines has allowed us to target and anticipate herd immunity. Understanding of the transmission dynamics and the persistence of the virus on environmental fomites and their resistive role on indirect transmission of the virus is an important scientific and public health challenge because it is essential to consider all possible transmission routes and route specific transmission strength to accurately quantify the herd immunity threshold. In this paper, we present a mathematical model that considers both direct and indirect transmission modes. Our analysis focuses on establishing the disease invasion threshold, investigating its sensitivity to both transmission routes and isolate route-specific transmission rate. Using the tau-leap algorithm, we perform a stochastic model simulation to address the invasion potential of both transmission routes. Our analysis shows that direct transmission has a higher invasion potential than that of the indirect transmission. As a proof of this concept, we fitted our model with early epidemic data from several countries to uniquely estimate the reproduction numbers associated with direct and indirect transmission upon confirming the identifiability of the parameters. As the indirect transmission possess lower invasion potential than direct transmission, proper estimation and necessary steps toward mitigating it would help reduce vaccination requirement.

Modeling and Analysis of COVID-19 Spread: The Impacts of Nonpharmaceutical Protocols

In this study, the extended SEIR dynamical model is formulated to investigate the spread of coronavirus disease (COVID-19) via a special focus on contact with asymptomatic and self-isolated infected individuals. Furthermore, a mathematical analysis of the model, including positivity, boundedness, and local and global stability of the disease-free and endemic equilibrium points in terms of the basic reproduction number, is presented. The sensitivity analysis indicates that reducing the disease contact rate and the transmissibility factor related to asymptomatic individuals, along with increasing the quarantine/self-isolation rate and the contact-tracing process, from the view of flattening the curve for novel coronavirus, are crucial to the reduction in disease-related deaths.

Jerarquización de zonas de atención prioritaria para la minimización del riesgo biológico en situación de crisis

Objetivo Proponer una herramienta para identificar sectores de población que requieren mayor atención por parte de autoridades locales o gubernamentales en situaciones de crisis biológica, considerando los factores que influyen en la adherencia a las normas de minimización de riesgos. Metodología Se implementó un algoritmo de ordenamiento, tomando como referencia las restricciones de julio del 2021 en Ecuador. El contexto del estudio se resume en siete sectores urbanos de la ciudad de Guayaquil, con una población caracterizada por un nivel de educación promedio por debajo de la educación secundaria superior (70%) y más del 50% entre 20-34 años, con alguna ocupación en el medio de una economía popular debilitada. Siete factores de riesgo fueron identificados después de un análisis estructural de la hipóótesis de adherencia (χ2/gl=3,6; CFI≥0,91; TLI≥0,90; RMSEA≤0,05), basado en una muestra aleatoria de n=515 adultos viviendo en las áreas afectadas. Resultados El seguimiento de las normas está influenciado por la percepción del clima de seguridad, el riesgo percibido y el entendimiento del riesgo. El umbral de ordenmiento (h) permite establecer relaciones unidireccionales entre variables. Conclusiones Los resultados muestran que Vergeles, Norte y Fertisa representan los sectores con mayor prioridad de atención en materia de salud pública {A4,A5,A6}>{A2}>{A3}>{A1}>{A7}. Se requiere identificar más factores para garantizar una diferenciación óptima.

Optimal control strategies for the reliable and competitive mathematical analysis of Covid-19 pandemic model

To understand dynamics of the COVID-19 disease realistically, a new SEIAPHR model has been proposed in this article where the infectious individuals have been categorized as symptomatic, asymptomatic, and super-spreaders. The model has been investigated for existence of a unique solution. To measure the contagiousness of COVID-19, reproduction numberR 0 is also computed using next generation matrix method. It is shown that the model is locally stable at disease-free equilibrium point whenR 0 < 1 and unstable forR 0 > 1 . The model has been analyzed for global stability at both of the disease-free and endemic equilibrium points. Sensitivity analysis is also included to examine the effect of parameters of the model on reproduction numberR 0 . A couple of optimal control problems have been designed to study the effect of control strategies for disease control and eradication from the society. Numerical results show that the adopted control approaches are much effective in reducing new infections.

A fractional-order multi-vaccination model for COVID-19 with non-singular kernel

This work examines the impact of multiple vaccination strategies on the dynamics of COVID-19 in a population using the Atangana-Baleanu derivative. The existence and uniqueness of solution of the model is proven using Banach’s fixed point theorem. Local and global asymptotic stability of the equilibria of the model is also proven (under some conditions). Conditions for the existence of a unique or multiple equilibria are also derived and the model is shown to undergo backward bifurcation under certain scenarios. Using available data for the Pfizer, Moderna and Janssen vaccination programme for the city of Texas, United States of America from March 13, 2021 to June 29, 2021, the model is fitted using the three data sets. The three vaccination rates ν1,ν2 and ν3 corresponding to each vaccine as well as the effective contact rate for COVID-19 transmission, β, are estimated. Simulations of the model under different vaccination strategies are carried out. The results show that the three vaccination strategies not only cause significant reduction in the new asymptomatic and vaccinated symptomatic cases but also cause great decrease in the total number of vaccinated symptomatic individuals with severe COVID-19 illness.

Optimal control model for criminal gang population in a limited-resource setting

In this present paper, the principles of optimal control theory is applied to a non-linear mathematical model for the population dynamics of criminal gangs with variability in the sub-population. To decrease (minimize) the progression rate of susceptible populations with no access to crime prevention programs from joining criminal gangs and increase (maximize) the rate of arrested and prosecution of criminals, we incorporate time-dependent control functions. These two functions represent the crime prevention strategy for the susceptible population and case finding control for the criminal gang population, in a limited-resource setting. Furthermore, we present a cost-effectiveness analysis for crime control intervention-related benefits to ascertain the most cost-effective and efficient optimal control strategy. The optimal control functions presented herein are solved by employing the Runge-Kutta Method of order four. Numerical results are demonstrated for different scenarios to exemplify the impact of the controls on the criminal gangs’ population.

Mathematical modeling for novel coronavirus (COVID-19) and control

In the present investigations, we construct a new mathematical for the transmission dynamics of corona virus (COVID-19) using the cases reported in Kingdom of Saudi Arabia for March 02 till July 31, 2020. We investigate the parameters values of the model using the least square curve fitting and the basic reproduction number is suggested for the given data is ℛ₀ ≈ 1.2937. The stability results of the model are shown when the basic reproduction number is ℛ₀ < 1. The model is locally asymptotically stable when ℛ₀ < 1. Further, we show some important parameters that are more sensitive to the basic reproduction number ℛ₀ using the PRCC method. The sensitive parameters that act as a control parameters that can reduce and control the infection in the population are shown graphically. The suggested control parameters can reduce dramatically the infection in the Kingdom of Saudi Arabia if the proper attention is paid to the suggested controls.

Third wave of COVID-19: mathematical model with optimal control strategy for reducing the disease burden in Nigeria

The study of COVID-19 pandemic which paralyzed global economy of countries is a crucial research area for effective future planning against other epidemics. Unfortunately, we now have variants of the disease resulting to what is now known as waves of the pandemic. Several mathematical models have been developed to study this disease. While recent models incorporated control measures, others are without optimal control measures or demographic parameters. In this study, we propose a deterministic compartmental epidemiological model to study the transmission dynamic of the spread of the third wave of the pandemic in Nigeria, and we incorporated optimal control measures as strategies to reduce the burden of the deadly disease. Specifically, we investigated the transmission dynamics of COVID-19 model without demographic features. We then conducted theoretical analysis of the model with and without optimal control strategy. In the model without optimal control, we computed the reproduction number, an epidemiological threshold useful for bringing the third wave of the pandemic under check in Nigeria, and we proofed the disease stability and conducted sensitivity analysis in order to identify parameters that can impact the reproduction number tremendously. In a similar reasoning, for the model with control strategy, we check the necessary condition for the model. To validate our theoretical analyses, we illustrated the applications of the proposed model using COVID-19 data for Nigeria for a period when the country was under the yoke of the third wave of the disease. The data were then fitted to the model, and we derived a predictive tool toward making a forecast for the cumulative number of cases of infection, cumulative number of active cases and the peak of the third wave of the pandemic. From the simulations, it was observed that the presence of optimal control parameters leads to significant impact on the reduction of the spread of the disease. However, it was discovered that the success of the control of the disease relies on the proper and effective implementation of the optimal control strategies efficiently and adequately.

Modeling the COVID-19 pandemic: a primer and overview of mathematical epidemiology

Since the start of the still ongoing COVID-19 pandemic, there have been many modeling efforts to assess several issues of importance to public health. In this work, we review the theory behind some important mathematical models that have been used to answer questions raised by the development of the pandemic. We start revisiting the basic properties of simple Kermack-McKendrick type models. Then, we discuss extensions of such models and important epidemiological quantities applied to investigate the role of heterogeneity in disease transmission e.g. mixing functions and superspreading events, the impact of non-pharmaceutical interventions in the control of the pandemic, vaccine deployment, herd-immunity, viral evolution and the possibility of vaccine escape. From the perspective of mathematical epidemiology, we highlight the important properties, findings, and, of course, deficiencies, that all these models have.

A fractional order model for the co-interaction of COVID-19 and Hepatitis B virus

Fractional differential equations are beginning to gain widespread usage in modeling physical and biological processes. It is worth mentioning that the standard mathematical models of integer-order derivatives, including nonlinear models, do not constitute suitable framework in many cases. In this work, a mathematical model for COVID-19 and Hepatitis B Virus (HBV) co-interaction is developed and studied using the Atangana-Baleanu fractional derivative. The necessary conditions of the existence and uniqueness of the solution of the proposed model are studied. The local stability analysis is carried out when the reproduction number is less than one. Using well constructed Lyapunov functions, the disease free and endemic equilibria are proven to be globally asymptotically stable under certain conditions. Employing fixed point theory, the stability of the iterative scheme to approximate the solution of the model is discussed. The model is fitted to real data from the city of Wuhan, China, and important parameters relating to each disease and their co-infection, are estimated from the fitting. The approximate solutions of the model are compared using the integer and fractional order derivatives. The impact of the fractional derivative on the proposed model is also highlighted. The results proven in this paper illustrate that HBV and COVID-19 transmission rates can greatly impact the dynamics of the co-infection of both diseases. It is concluded that to control the co-circulation of both diseases in a population, efforts must be geared towards preventing incident infection with either or both diseases.

Mathematical modeling and analysis of the SARS-Cov-2 disease with reinfection

The COVID-19 infection which is still infecting many individuals around the world and at the same time the recovered individuals after the recovery are infecting again. This reinfection of the individuals after the recovery may lead the disease to worse in the population with so many challenges to the health sectors. We study in the present work by formulating a mathematical model for SARS-CoV-2 with reinfection. We first briefly discuss the formulation of the model with the assumptions of reinfection, and then study the related qualitative properties of the model. We show that the reinfection model is stable locally asymptotically when R0<1. For R0≤1, we show that the model is globally asymptotically stable. Further, we consider the available data of coronavirus from Pakistan to estimate the parameters involved in the model. We show that the proposed model shows good fitting to the infected data. We compute the basic reproduction number with the estimated and fitted parameters numerical value is R0≈1.4962. Further, we simulate the model using realistic parameters and present the graphical results. We show that the infection can be minimized if the realistic parameters (that are sensitive to the basic reproduction number) are taken into account. Also, we observe the model prediction for the total infected cases in the future fifth layer of COVID-19 in Pakistan that may begin in the second week of February 2022.

The Impacts of COVID-19 on Distance Education with the Application of Traditional and Digital Appliances: Evidence from 60 Developing Countries

Educational disruptions from the COVID-19 pandemic during school closures have become a remarkable social issue, particularly among the developing countries. Ample literature has verified the adverse effects of the long-lasing epidemic on school education. However, rare studies seek to understand the association between the severity of COVID-19 and distance learning, an alternative education pattern, and foster policy designs to promote educational transition, particularly targeting the post-crisis phase of the COVID-19. By combining four data surveys, this article empirically examines the impacts of COVID-19 on children's distance education with the application of various appliances across 60 developing countries. The results suggest that, after controlling socio-economic, geographic, and demographic variables, a higher level of mortality rate of COVID-19 contributes to more households participating in distance education. In particular, this positive term is larger for distance education by using TVs and radios compared with the usage of digital appliances. To explore the potential channel of the above linkage, this article argues that the positive association between mortality rate and the use of traditional appliances is weakened through higher levels of stringency in lockdown measures. Timely policies are, therefore, recommended to guide towards distance learning with economic and technological supports to guarantee a wave of inclusive educational recovery in the ongoing post-COVID-19 era.

Global prediction model for COVID-19 pandemic with the characteristics of the multiple peaks and local fluctuations

Background

With the spread of COVID-19, the time-series prediction of COVID-19 has become a research hotspot. Unlike previous epidemics, COVID-19 has a new pattern of long-time series, large fluctuations, and multiple peaks. Traditional dynamical models are limited to curves with short-time series, single peak, smoothness, and symmetry. Secondly, most of these models have unknown parameters, which bring greater ambiguity and uncertainty. There are still major shortcomings in the integration of multiple factors, such as human interventions, environmental factors, and transmission mechanisms.

Methods

A dynamical model with only infected humans and removed humans was established. Then the process of COVID-19 spread was segmented using a local smoother. The change of infection rate at different stages was quantified using the continuous and periodic Logistic growth function to quantitatively describe the comprehensive effects of natural and human factors. Then, a non-linear variable and NO₂ concentrations were introduced to qualify the number of people who have been prevented from infection through human interventions.

Results

The experiments and analysis showed the R² of fitting for the US, UK, India, Brazil, Russia, and Germany was 0.841, 0.977, 0.974, 0.659, 0.992, and 0.753, respectively. The prediction accuracy of the US, UK, India, Brazil, Russia, and Germany in October was 0.331, 0.127, 0.112, 0.376, 0.043, and 0.445, respectively.

Conclusion

The model can not only better describe the effects of human interventions but also better simulate the temporal evolution of COVID-19 with local fluctuations and multiple peaks, which can provide valuable assistant decision-making information.

Supplementary Information

The online version contains supplementary material available at 10.1186/s12874-022-01604-x.

Dynamics of novel COVID-19 in the presence of Co-morbidity

A novel coronavirus (COVID-19) has emerged as a global serious public health issue from December 2019. People having a weak immune system are more susceptible to coronavirus infection. It is a double challenge for people of any age with certain underlying medical conditions including cardiovascular disease, diabetes, high blood pressure and cancer etc. Co-morbidity increases the probability of COVID-19 complication. In this paper a deterministic compartmental model is formulated to understand the transmission dynamics of COVID-19. Rigorous mathematical analysis of the model shows that it exhibits backward bifurcation phenomenon when the basic reproduction number is less than unity. For the case of no re-infection it is shown that having the reproduction number less than one is necessary and sufficient for the effective control of COVID-19, that is, the disease free equilibrium is globally asymptotically stable when the reproduction threshold is less than unity. Furthermore, in the absence of reinfection, a unique endemic equilibrium of the model exists which is globally asymptotically stable whenever the reproduction number is greater than unity. Numerical simulations of the model, using data relevant to COVID-19 transmission dynamics, show that the use of efficacious face masks publicly could lead to the elimination of COVID-19 up to a satisfactory level. The study also shows that in the presence of co-morbidity, the disease increases significantly.

Modeling of COVID-19 spread with self-isolation at home and hospitalized classes

This work examines the impacts of self-isolation and hospitalization on the population dynamics of the Corona-Virus Disease. We developed a new nonlinear deterministic model eight classes compartment, with self-isolation and hospitalized being the most effective tools. There are (Susceptible S C ( t ) , Exposed E ( t ) , Asymptomatic infected I A ( t ) , Symptomatic infected A S ( t ) , Self-isolation T M ( t ) , Hospitalized T H ( t ) , Healed H ( t ) , and Susceptible individuals previously infected H C ( t ) ). The expression of basic reproduction number R 0 comes from the next-generation matrix method. With suitably constructed Lyapunov functions, the global asymptotic stability of the non-endemic equilibria Σ 0 for R 0 < 1 and that of endemic equilibria Σ ∗ for R 0 > 1 are established. The computed value of R 0 = 3 . 120277403 proves the endemic level of the epidemic. The outbreak will lessen if a policy is enforced like self-isolation and hospitalization. This is related to those policies that can reduce the number of direct contacts between infected and susceptible individuals or waning immunity individuals. Various simulations are presented to appreciate self-isolation at home and hospitalized strategies if applied sensibly. By performing a global sensitivity analysis, we can obtain parameter values that affect the model through a combination of Latin Hypercube Sampling and Partial Rating Correlation Coefficients methods to determine the parameters that affect the number of reproductions and the increase in the number of COVID cases. The results obtained show that the rate of self-isolation at home and the rate of hospitalism have a negative relationship. On the other hand, infections will decrease when the two parameters increase. From the sensitivity of the results, we formulate a control model using optimal control theory by considering two control variables. The result shows that the control strategies minimize the spread of the COVID infection in the population.

A curative and preventive treatment fractional model for plant disease in Atangana–Baleanu derivative through Lagrange interpolation

The growth of the world populations number leads to increasing food needs. However, plant diseases can decrease the production and quality of agricultural harvests. Mathematical models are widely used to model and interpret plant diseases, showing viruses’ transmission dynamics and effects. In this paper, we investigate the dynamics of the treatments of plant diseases via the Atangana–Baleanu derivative in the sense of Caputo (ABC). We study the existence and uniqueness of solutions of curative and preventive treatment fractional model for plant disease. By using Lagrange interpolation, we give numerical simulations and investigate the results at various fractional orders under specific parameters. The results show that the increase of the roguing rate for the most infected plant or the decrease of the rate of planting in the infected area will reduce the plant disease transmissions. For balancing the plant production, the decision-makers can plant in other areas in which there are no infected cases.

COVID-19 and Chikungunya: an optimal control model with consideration of social and environmental factors

Chikungunya is one of the Aedes aegypti diseases that mosquito transmits to humans and that are common in tropical countries like Yemen. In this work, we formulated a novel dynamic mathematical model framework, which integrates COVID-19 and Chikungunya outbreaks. The proposed model is governed by a system of dynamic ordinary differential equations (ODEs). Particle swarm optimization was employed to solve the parameters estimation problem of the outbreaks of COVID-19 and Chikungunya in Yemen (March 1, 2020, to May 30, 2020). Besides, a bi-objective optimal control model was formulated, which minimizes the number of affected individuals and minimizes the total cost associated with the intervention strategies. The bi-objective optimal control was also solved using PSO. Five preventive measures were considered to curb the environmental and social factors that trigger the emergence of these viruses. Several strategies were simulated to evaluate the best possible strategy under the conditions and available resources in Yemen. The results obtained confirm that the strategy, which provides resources to prevent the transmission of Chikungunya and provides sufficient resources for testing, applying average social distancing, and quarrying the affected individuals, has a significant effect on flattening the epidemic curves and is the most suitable strategy in Yemen.

Community health workers experiences and perceptions of working during the COVID-19 pandemic in Lagos, Nigeria-A qualitative study

BACKGROUND

Community Health Workers are globally recognised as crucial members of healthcare systems in low and middle-income countries, but their role and experience during COVID-19 is not well-understood. This study aimed to explore factors that influence CHWs' ability and willingness to work in the COVID-19 pandemic in Lagos.

DESIGN

A generic qualitative study exploring Community Health Workers experiences and perceptions of working during the COVID-19 pandemic in Lagos, Nigeria.

METHODS

15 semi-structured, in-depth, video interviews were conducted with Community Health Workers purposively sampled across seven of Lagos' Local Government Areas with the highest COVID-19 burden. Interviews explored Community Health Workers' attitudes towards COVID-19, its management, and their experiences working in Lagos. Data was analysed thematically using the framework method.

RESULTS

Three main themes were identified. 1. Influences on ability to undertake COVID-19 Role: Trust and COVID-19 knowledge were found to aid Community Health Workers in their work. However, challenges included exhaustion due to an increased workload, public misconceptions about COVID-19, stigmatisation of COVID-19 patients, delayed access to care and lack of transportation. 2. Influences on willingness to work in COVID-19 Role: Community Health Workers' perceptions of COVID-19, attitudes towards responsibility for COVID-19 risk at work, commitment and faith appeared to increase willingness to work. 3. Suggested Improvements: Financial incentives, provision of adequate personal protective equipment, transportation, and increasing staff numbers were seen as potential strategies to address many of the challenges faced.

CONCLUSION

Despite Community Health Workers being committed to their role, they have faced many challenges during the COVID-19 pandemic in Nigeria. Changes to their working environment may make their role during disease outbreaks more fulfilling and sustainable. International input is required to enhance Nigeria's policies and infrastructure to better support Community Health Workers during both current and future outbreaks.

Investigating the transmission dynamics of SARS-CoV-2 in Nigeria: A SEIR modelling approach

This study was designed to investigate the transmission dynamics of the novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) to inform policy advisory vital for managing the spread of the virus in Nigeria. We applied the Susceptible-Exposed-Infectious-Recovered (SEIR)-type predictive model to discern the transmission dynamics of SARS-CoV-2 at different stages of the pandemic; incidence, during and after the lockdown from 27th March 2020 to 22nd September 2020 in Nigeria. Our model was calibrated with the COVID-19 data (obtained from the Nigeria Centre for Disease Control) using the "lsqcurvefit" package in MATLAB to fit the "cumulative active cases" and "cumulative death" data. We adopted the Latin hypercube sampling with a partial rank correlation coefficient index to determine the measure of uncertainty in our parameter estimation at a 99% confidence interval (CI). At the incidence of SARS-CoV-2 in Nigeria, the basic reproduction number (R0 ) was 6.860; 99%CI [6.003, 7.882]. R0 decreased by half (3.566; 99%CI [3.503, 3.613]) during the lockdown, and R0 was 1.238; 99%CI [1.215, 1.262] after easing the lockdown. If all parameters are maintained (as in after easing the lockdown), our model forecasted a gradual and perpetual surge through the next 12 months or more. In the light of our results and available data, evidence of human-to-human transmission at higher rates is still very likely. A timely, proactive, and well-articulated effort should help mitigate the transmission of SARS-CoV-2 in Nigeria.

A critical evaluation of Nigeria's response to the first wave of COVID-19

BACKGROUND

The first wave of the Coronavirus Disease 2019 (COVID-19) pandemic began when the first index case was reported in Nigeria on the 27th of February 2020, and since then, more than 68,000 cases of the disease were confirmed, with 1173 deaths as of November 30, 2020.

MAIN BODY

Daily situation reports from the Nigeria Centre for Disease Control spanning February 27-November 30, 2020, were fully considered in this review. Further literature search was performed using PubMed and Google Scholar databases for articles related to response measures adopted by Nigeria. The instantaneous reproduction number (R) was then estimated as a metric to investigate the non-pharmaceutical intervention measures. Nigeria responded to COVID-19 pandemic by implementing anti-COVID-19 mitigation strategies in travel restrictions, social distancing, source control, contact tracing, self-isolation, and quarantine, as well as in clinical interventions. Our epidemiological model estimated the R-value of more than 1.0 in Nigeria and in each of all the 36 states and the Federal Capital Territory.

CONCLUSION

Nigeria implemented containment and mitigation measures in response to the first wave of COVID-19 and these measures may have contributed to the mild COVID-19 outcome in Nigeria compared to the global trend. However, inadequate PCR testing capacity, lack or suboptimal utilization of epidemic metrics like the virus reproduction number (R) to inform decision making, and premature easing of lockdown measures among others were major challenges to the effective implementation of the COVID-19 response measures.

Threshold dynamics of a stochastic SIHR epidemic model of COVID-19 with general population-size dependent contact rate

In this paper, we propose a stochastic SIHR epidemic model of COVID-19. A basic reproduction number $ R_{0}^{s} $ is defined to determine the extinction or persistence of the disease. If $ R_{0}^{s} < 1 $, the disease will be extinct. If $ R_{0}^{s} > 1 $, the disease will be strongly stochastically permanent. Based on realistic parameters of COVID-19, we numerically analyze the effect of key parameters such as transmission rate, confirmation rate and noise intensity on the dynamics of disease transmission and obtain sensitivity indices of some parameters on $ R_{0}^{s} $ by sensitivity analysis. It is found that: 1) The threshold level of deterministic model is overestimated in case of neglecting the effect of environmental noise; 2) The decrease of transmission rate and the increase of confirmed rate are beneficial to control the spread of COVID-19. Moreover, our sensitivity analysis indicates that the parameters $ \beta $, $ \sigma $ and $ \delta $ have significantly effects on $ R_0^s $.

Transmission dynamics model and the coronavirus disease 2019 epidemic: applications and challenges

Since late 2019, the beginning of coronavirus disease 2019 (COVID-19) pandemic, transmission dynamics models have achieved great development and were widely used in predicting and policy making. Here, we provided an introduction to the history of disease transmission, summarized transmission dynamics models into three main types: compartment extension, parameter extension and population-stratified extension models, highlight the key contribution of transmission dynamics models in COVID-19 pandemic: estimating epidemiological parameters, predicting the future trend, evaluating the effectiveness of control measures and exploring different possibilities/scenarios. Finally, we pointed out the limitations and challenges lie ahead of transmission dynamics models.

Nonlinear growth and mathematical modelling of COVID-19 in some African countries with the Atangana-Baleanu fractional derivative

We analyse the time-series evolution of the cumulative number of confirmed cases of COVID-19, the novel coronavirus disease, for some African countries. We propose a mathematical model, incorporating non-pharmaceutical interventions to unravel the disease transmission dynamics. Analysis of the stability of the model's steady states was carried out, and the reproduction number R 0 , a vital key for flattening the time-evolution of COVID-19 cases, was obtained by means of the next generation matrix technique. By dividing the time evolution of the pandemic for the cumulative number of confirmed infected cases into different regimes or intervals, hereafter referred to as phases, numerical simulations were performed to fit the proposed model to the cumulative number of confirmed infections for different phases of COVID-19 during its first wave. The estimated R 0 declined from 2.452-9.179 during the first phase of the infection to 1.374-2.417 in the last phase. Using the Atangana-Baleanu fractional derivative, a fractional COVID-19 model is proposed and numerical simulations performed to establish the dependence of the disease dynamics on the order of the fractional derivatives. An elasticity and sensitivity analysis of R 0 was carried out to determine the most significant parameters for combating the disease outbreak. These were found to be the effective disease transmission rate, the disease diagnosis or case detection rate, the proportion of susceptible individuals taking precautions, and the disease infection rate. Our results show that if the disease infection rate is less than 0.082/day, then R 0 is always less than 1; and if at least 55.29% of the susceptible population take precautions such as regular hand washing with soap, use of sanitizers, and the wearing of face masks, then the reproduction number R 0 remains below unity irrespective of the disease infection rate. Keeping R 0 values below unity leads to a decrease in COVID-19 prevalence.

Dynamical demeanour of SARS-CoV-2 virus undergoing immune response mechanism in COVID-19 pandemic

COVID-19 is caused by the increase of SARS-CoV-2 viral load in the respiratory system. Epithelial cells in the human lower respiratory tract are the major target area of the SARS-CoV-2 viruses. To fight against the SARS-CoV-2 viral infection, innate and thereafter adaptive immune responses be activated which are stimulated by the infected epithelial cells. Strong immune response against the COVID-19 infection can lead to longer recovery time and less severe secondary complications. We proposed a target cell-limited mathematical model by considering a saturation term for SARS-CoV-2-infected epithelial cells loss reliant on infected cells level. The analytical findings reveal the conditions for which the system undergoes transcritical bifurcation and alternation of stability for the system around the steady states happens. Due to some external factors, while the viral reproduction rate exceeds its certain critical value, backward bifurcation and reinfection may take place and to inhibit these complicated epidemic states, host immune response, or immunopathology would play the essential role. Numerical simulation has been performed in support of the analytical findings.

Mathematical analysis of the dynamics of COVID-19 in Africa under the influence of asymptomatic cases and re-infection

Coronavirus pandemic (COVID-19) hit the world in December 2019, and only less than 5% of the 15 million cases were recorded in Africa. A major call for concern was the significant rise from 2% in May 2020 to 4.67% by the end of July 15, 2020. This drastic increase calls for quick intervention in the transmission and control strategy of COVID-19 in Africa. A mathematical model to theoretically investigate the consequence of ignoring asymptomatic cases on COVID-19 spread in Africa is proposed in this study. A qualitative analysis of the model is carried out with and without re-infection, and the reproduction number is obtained under re-infection. The results indicate that increasing case detection to detect asymptomatically infected individuals will be very effective in containing and reducing the burden of COVID-19 in Africa. In addition, the fact that it has not been confirmed whether a recovered individual can be re-infected or not, then enforcing a living condition where recovered individuals are not allowed to mix with the susceptible or exposed individuals will help in containing the spread of COVID-19.

Fuzzy fractional mathematical model of COVID-19 epidemic

In this paper, we develop a mathematical model with a Caputo fractional derivative under fuzzy sense for the prediction of COVID-19. We present numerical results of the mathematical model for COVID-19 of most three infected countries such as the USA, India and Italy. Using the proposed model, we estimate predicting future outbreaks, the effectiveness of preventive measures and potential control strategies of the infection. We provide a comparative study of the proposed model with Ahmadian’s fuzzy fractional mathematical model. The results demonstrate that our proposed fuzzy fractional model gives a nearer forecast to the actual data. The present study can confirm the efficiency and applicability of the fractional derivative under uncertainty conditions to mathematical epidemiology.